4DA3
HEADER DNA 12-JAN-12 4DA3
TITLE CRYSTAL STRUCTURE OF AN INTRAMOLECULAR HUMAN TELOMERIC DNA G-
TITLE 2 QUADRUPLEX 21-MER BOUND BY THE NAPHTHALENE DIIMIDE COMPOUND MM41.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA (5'-
COMPND 3 D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-
COMPND 4 3');
COMPND 5 CHAIN: A;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC DNA;
SOURCE 4 ORGANISM_TAXID: 32630;
SOURCE 5 OTHER_DETAILS: DNA SYNTHESIZED BY STANDARD PHOSPHORAMIDITE
SOURCE 6 CHEMISTRY.
KEYWDS INTRAMOLECULAR, LIGAND-COMPLEX, G-QUADRUPLEX, TELOMERE, DNA
EXPDTA X-RAY DIFFRACTION
AUTHOR G.W.COLLIE,S.NEIDLE
REVDAT 3 24-APR-13 4DA3 1 JRNL
REVDAT 2 03-APR-13 4DA3 1 JRNL
REVDAT 1 30-JAN-13 4DA3 0
JRNL AUTH M.MICCO,G.W.COLLIE,A.G.DALE,S.A.OHNMACHT,I.PAZITNA,
JRNL AUTH 2 M.GUNARATNAM,A.P.RESZKA,S.NEIDLE
JRNL TITL STRUCTURE-BASED DESIGN AND EVALUATION OF NAPHTHALENE DIIMIDE
JRNL TITL 2 G-QUADRUPLEX LIGANDS AS TELOMERE TARGETING AGENTS IN
JRNL TITL 3 PANCREATIC CANCER CELLS.
JRNL REF J.MED.CHEM. V. 56 2959 2013
JRNL REFN ISSN 0022-2623
JRNL PMID 23514618
JRNL DOI 10.1021/JM301899Y
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.81
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3
REMARK 3 NUMBER OF REFLECTIONS : 3098
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.244
REMARK 3 R VALUE (WORKING SET) : 0.242
REMARK 3 FREE R VALUE : 0.282
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600
REMARK 3 FREE R VALUE TEST SET COUNT : 151
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46
REMARK 3 REFLECTION IN BIN (WORKING SET) : 196
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03
REMARK 3 BIN R VALUE (WORKING SET) : 0.4570
REMARK 3 BIN FREE R VALUE SET COUNT : 9
REMARK 3 BIN FREE R VALUE : 0.5710
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 0
REMARK 3 NUCLEIC ACID ATOMS : 444
REMARK 3 HETEROGEN ATOMS : 63
REMARK 3 SOLVENT ATOMS : 25
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 66.21
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.53
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.01000
REMARK 3 B22 (A**2) : -0.01000
REMARK 3 B33 (A**2) : 0.01000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.441
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.523
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 567 ; 0.008 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 869 ; 1.727 ; 1.505
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 63 ; 0.070 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 261 ; 0.009 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN
REMARK 3 THE INPUT
REMARK 4
REMARK 4 4DA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-12.
REMARK 100 THE RCSB ID CODE IS RCSB070072.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-DEC-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795
REMARK 200 MONOCHROMATOR : SI 111 CHANNEL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3843
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270
REMARK 200 RESOLUTION RANGE LOW (A) : 25.970
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9
REMARK 200 DATA REDUNDANCY : 6.700
REMARK 200 R MERGE (I) : 0.03800
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 23.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.80
REMARK 200 R MERGE FOR SHELL (I) : 0.59700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 2.300
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3SC8
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.43
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG400, 150 MM SODIUM CHLORIDE AND
REMARK 280 50 MM SODIUM CACODYLATE (PH 6.5), VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.31333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.62667
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.62667
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.31333
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 K K A 103 LIES ON A SPECIAL POSITION.
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DG A 8 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES
REMARK 500 DT A 10 C3' - O3' - P ANGL. DEV. = 12.6 DEGREES
REMARK 500 DT A 17 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES
REMARK 500 DA A 18 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 K A 101 K
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DG A 9 O6
REMARK 620 2 DG A 3 O6 79.6
REMARK 620 3 DG A 21 O6 124.1 81.0
REMARK 620 4 DG A 15 O6 78.4 135.7 80.4
REMARK 620 5 DG A 2 O6 127.6 68.3 91.1 151.5
REMARK 620 6 DG A 8 O6 68.8 91.8 163.0 114.8 71.9
REMARK 620 7 DG A 20 O6 155.0 124.3 71.7 86.6 64.9 100.6
REMARK 620 8 DG A 14 O6 88.4 155.9 122.8 60.0 104.5 64.3 66.8
REMARK 620 N 1 2 3 4 5 6 7
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 K A 103 K
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DG A 7 O6
REMARK 620 2 DG A 13 O6 73.0
REMARK 620 3 DG A 19 O6 108.6 73.7
REMARK 620 4 DG A 1 O6 65.5 112.6 72.5
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 K A 102 K
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DG A 20 O6
REMARK 620 2 DG A 8 O6 113.5
REMARK 620 3 DG A 1 O6 85.6 128.5
REMARK 620 4 DG A 2 O6 69.1 75.9 67.0
REMARK 620 5 DG A 7 O6 154.7 77.8 70.4 93.4
REMARK 620 6 DG A 14 O6 74.8 71.2 157.3 114.6 130.3
REMARK 620 7 DG A 19 O6 78.6 149.0 79.0 134.1 103.7 85.9
REMARK 620 8 DG A 13 O6 136.7 88.7 109.8 154.1 62.7 78.6 65.9
REMARK 620 N 1 2 3 4 5 6 7
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0DX A 104
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4DAQ RELATED DB: PDB
REMARK 900 SIMILAR NAPHTHALENE DIIMIDE COMPOUND BOUND TO THE SAME 21-
REMARK 900 MER HUMAN TELOMERIC G-QUADRUPLEX.
REMARK 900 RELATED ID: 3UYH RELATED DB: PDB
REMARK 900 SAME NAPHTHALENE DIIMIDE COMPOUND BOUND TO A 22-MER HUMAN
REMARK 900 TELOMERIC G-QUADRUPLEX.
REMARK 900 RELATED ID: 3SC8 RELATED DB: PDB
REMARK 900 SIMILAR NAPHTHALENE DIIMIDE COMPOUND BOUND TO A 22-MER
REMARK 900 HUMAN TELOMERIC G-QUADRUPLEX.
REMARK 900 RELATED ID: 3T5E RELATED DB: PDB
REMARK 900 SIMILAR NAPHTHALENE DIIMIDE COMPOUND BOUND TO A 22-MER
REMARK 900 HUMAN TELOMERIC G-QUADRUPLEX.
DBREF 4DA3 A 1 21 PDB 4DA3 4DA3 1 21
SEQRES 1 A 21 DG DG DG DT DT DA DG DG DG DT DT DA DG
SEQRES 2 A 21 DG DG DT DT DA DG DG DG
HET K A 101 1
HET K A 102 1
HET K A 103 1
HET 0DX A 104 60
HETNAM K POTASSIUM ION
HETNAM 0DX 4,9-BIS{[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]AMINO}-2,7-
HETNAM 2 0DX BIS[3-(MORPHOLIN-4-YL)PROPYL]BENZO[LMN][3,
HETNAM 3 0DX 8]PHENANTHROLINE-1,3,6,8(2H,7H)-TETRONE
FORMUL 2 K 3(K 1+)
FORMUL 5 0DX C44 H66 N10 O6
FORMUL 6 HOH *25(H2 O)
LINK O6 DG A 9 K K A 101 1555 1555 2.62
LINK O6 DG A 3 K K A 101 1555 1555 2.63
LINK O6 DG A 7 K K A 103 1555 1555 2.67
LINK O6 DG A 20 K K A 102 1555 1555 2.71
LINK O6 DG A 8 K K A 102 1555 1555 2.73
LINK O6 DG A 21 K K A 101 1555 1555 2.74
LINK O6 DG A 15 K K A 101 1555 1555 2.75
LINK O6 DG A 1 K K A 102 1555 1555 2.79
LINK O6 DG A 13 K K A 103 1555 1555 2.80
LINK O6 DG A 2 K K A 102 1555 1555 2.82
LINK O6 DG A 7 K K A 102 1555 1555 2.84
LINK O6 DG A 14 K K A 102 1555 1555 2.87
LINK O6 DG A 2 K K A 101 1555 1555 2.87
LINK O6 DG A 8 K K A 101 1555 1555 2.94
LINK O6 DG A 20 K K A 101 1555 1555 2.98
LINK O6 DG A 19 K K A 103 1555 1555 3.02
LINK O6 DG A 19 K K A 102 1555 1555 3.05
LINK O6 DG A 14 K K A 101 1555 1555 3.17
LINK O6 DG A 1 K K A 103 1555 1555 3.25
LINK O6 DG A 13 K K A 102 1555 1555 3.36
SITE 1 AC1 9 DG A 2 DG A 3 DG A 8 DG A 9
SITE 2 AC1 9 DG A 14 DG A 15 DG A 20 DG A 21
SITE 3 AC1 9 K A 102
SITE 1 AC2 10 DG A 1 DG A 2 DG A 7 DG A 8
SITE 2 AC2 10 DG A 13 DG A 14 DG A 19 DG A 20
SITE 3 AC2 10 K A 101 K A 103
SITE 1 AC3 5 DG A 1 DG A 7 DG A 13 DG A 19
SITE 2 AC3 5 K A 102
SITE 1 AC4 11 DG A 3 DT A 5 DG A 9 DT A 10
SITE 2 AC4 11 DT A 11 DA A 12 DG A 15 DG A 21
SITE 3 AC4 11 HOH A 212 HOH A 224 HOH A 225
CRYST1 51.310 51.310 51.940 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019489 0.011252 0.000000 0.00000
SCALE2 0.000000 0.022504 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019253 0.00000
ATOM 1 O5' DG A 1 14.724 -7.646 13.835 1.00 41.37 O
ATOM 2 C5' DG A 1 14.832 -8.869 13.090 1.00 38.94 C
ATOM 3 C4' DG A 1 15.432 -9.957 13.950 1.00 39.56 C
ATOM 4 O4' DG A 1 14.389 -10.862 14.402 1.00 39.99 O
ATOM 5 C3' DG A 1 16.463 -10.820 13.223 1.00 38.31 C
ATOM 6 O3' DG A 1 17.781 -10.466 13.648 1.00 38.29 O
ATOM 7 C2' DG A 1 16.111 -12.236 13.636 1.00 36.67 C
ATOM 8 C1' DG A 1 14.617 -12.155 13.876 1.00 35.31 C
ATOM 9 N9 DG A 1 13.798 -12.303 12.676 1.00 34.21 N
ATOM 10 C8 DG A 1 12.971 -11.360 12.117 1.00 32.68 C
ATOM 11 N7 DG A 1 12.360 -11.784 11.045 1.00 31.46 N
ATOM 12 C5 DG A 1 12.802 -13.089 10.892 1.00 30.87 C
ATOM 13 C6 DG A 1 12.483 -14.054 9.911 1.00 30.48 C
ATOM 14 O6 DG A 1 11.726 -13.944 8.944 1.00 34.23 O
ATOM 15 N1 DG A 1 13.153 -15.250 10.133 1.00 28.68 N
ATOM 16 C2 DG A 1 14.026 -15.486 11.159 1.00 27.80 C
ATOM 17 N2 DG A 1 14.587 -16.698 11.187 1.00 27.99 N
ATOM 18 N3 DG A 1 14.330 -14.597 12.086 1.00 29.51 N
ATOM 19 C4 DG A 1 13.691 -13.426 11.889 1.00 31.43 C
ATOM 20 P DG A 2 18.930 -10.210 12.579 1.00 38.83 P
ATOM 21 OP1 DG A 2 20.111 -9.833 13.370 1.00 42.29 O
ATOM 22 OP2 DG A 2 18.478 -9.331 11.486 1.00 37.24 O
ATOM 23 O5' DG A 2 19.211 -11.650 11.967 1.00 37.30 O
ATOM 24 C5' DG A 2 19.760 -12.686 12.790 1.00 34.55 C
ATOM 25 C4' DG A 2 19.858 -13.987 12.031 1.00 31.45 C
ATOM 26 O4' DG A 2 18.537 -14.520 11.826 1.00 30.04 O
ATOM 27 C3' DG A 2 20.460 -13.890 10.639 1.00 31.60 C
ATOM 28 O3' DG A 2 21.866 -14.130 10.665 1.00 32.99 O
ATOM 29 C2' DG A 2 19.832 -15.072 9.932 1.00 30.74 C
ATOM 30 C1' DG A 2 18.463 -15.181 10.575 1.00 28.57 C
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ATOM 36 O6 DG A 2 13.996 -13.789 6.845 1.00 29.89 O
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ATOM 45 O5' DG A 3 22.795 -14.821 8.443 1.00 31.52 O
ATOM 46 C5' DG A 3 22.993 -16.161 8.897 1.00 30.98 C
ATOM 47 C4' DG A 3 22.747 -17.105 7.745 1.00 30.32 C
ATOM 48 O4' DG A 3 21.347 -17.051 7.378 1.00 30.22 O
ATOM 49 C3' DG A 3 23.522 -16.737 6.482 1.00 31.50 C
ATOM 50 O3' DG A 3 23.813 -17.918 5.746 1.00 36.95 O
ATOM 51 C2' DG A 3 22.511 -15.952 5.679 1.00 29.46 C
ATOM 52 C1' DG A 3 21.216 -16.667 6.019 1.00 27.96 C
ATOM 53 N9 DG A 3 20.050 -15.799 5.901 1.00 25.22 N
ATOM 54 C8 DG A 3 19.853 -14.621 6.573 1.00 24.99 C
ATOM 55 N7 DG A 3 18.746 -14.019 6.238 1.00 25.12 N
ATOM 56 C5 DG A 3 18.186 -14.841 5.271 1.00 24.35 C
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ATOM 69 C4' DT A 4 26.727 -19.506 8.649 1.00 37.75 C
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ATOM 71 C3' DT A 4 26.822 -20.773 9.489 1.00 40.03 C
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ATOM 81 C5 DT A 4 22.150 -18.510 11.648 1.00 34.41 C
ATOM 82 C7 DT A 4 20.801 -19.128 11.458 1.00 33.17 C
ATOM 83 C6 DT A 4 23.271 -19.027 11.125 1.00 35.17 C
ATOM 84 P DT A 5 29.126 -22.036 9.589 1.00 41.82 P
ATOM 85 OP1 DT A 5 30.496 -21.562 9.878 1.00 46.35 O
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ATOM 87 O5' DT A 5 28.738 -23.100 10.694 1.00 37.66 O
ATOM 88 C5' DT A 5 28.457 -24.448 10.333 1.00 34.76 C
ATOM 89 C4' DT A 5 27.709 -25.091 11.475 1.00 34.97 C
ATOM 90 O4' DT A 5 28.236 -24.616 12.730 1.00 34.36 O
ATOM 91 C3' DT A 5 26.240 -24.719 11.543 1.00 34.94 C
ATOM 92 O3' DT A 5 25.504 -25.467 10.577 1.00 35.94 O
ATOM 93 C2' DT A 5 25.917 -25.017 12.993 1.00 33.19 C
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ATOM 102 C7 DT A 5 28.537 -19.806 13.303 1.00 26.10 C
ATOM 103 C6 DT A 5 27.807 -22.171 13.583 1.00 27.55 C
ATOM 104 P DA A 6 24.456 -24.693 9.676 1.00 35.85 P
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ATOM 107 O5' DA A 6 23.382 -24.360 10.804 1.00 35.67 O
ATOM 108 C5' DA A 6 22.718 -25.424 11.515 1.00 33.74 C
ATOM 109 C4' DA A 6 21.617 -24.870 12.386 1.00 31.66 C
ATOM 110 O4' DA A 6 22.195 -24.032 13.408 1.00 30.19 O
ATOM 111 C3' DA A 6 20.580 -24.008 11.662 1.00 31.60 C
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ATOM 113 C2' DA A 6 20.969 -22.599 12.047 1.00 29.52 C
ATOM 114 C1' DA A 6 21.509 -22.800 13.446 1.00 28.61 C
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ATOM 119 C6 DA A 6 23.478 -18.780 15.344 1.00 28.00 C
ATOM 120 N6 DA A 6 24.574 -18.030 15.489 1.00 29.00 N
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ATOM 122 C2 DA A 6 21.237 -19.127 15.789 1.00 27.56 C
ATOM 123 N3 DA A 6 21.085 -20.277 15.139 1.00 27.06 N
ATOM 124 C4 DA A 6 22.240 -20.650 14.564 1.00 26.73 C
ATOM 125 P DG A 7 18.281 -25.422 11.704 1.00 36.00 P
ATOM 126 OP1 DG A 7 17.333 -25.507 12.833 1.00 35.94 O
ATOM 127 OP2 DG A 7 19.001 -26.635 11.261 1.00 34.45 O
ATOM 128 O5' DG A 7 17.599 -24.892 10.369 1.00 32.21 O
ATOM 129 C5' DG A 7 16.748 -23.744 10.356 1.00 29.54 C
ATOM 130 C4' DG A 7 15.885 -23.767 9.116 1.00 27.38 C
ATOM 131 O4' DG A 7 14.883 -22.734 9.212 1.00 25.64 O
ATOM 132 C3' DG A 7 16.628 -23.524 7.798 1.00 27.97 C
ATOM 133 O3' DG A 7 16.253 -24.516 6.850 1.00 30.14 O
ATOM 134 C2' DG A 7 16.114 -22.178 7.326 1.00 26.83 C
ATOM 135 C1' DG A 7 14.738 -22.130 7.947 1.00 24.89 C
ATOM 136 N9 DG A 7 14.195 -20.794 8.146 1.00 22.56 N
ATOM 137 C8 DG A 7 14.635 -19.847 9.034 1.00 22.08 C
ATOM 138 N7 DG A 7 13.939 -18.746 8.994 1.00 22.06 N
ATOM 139 C5 DG A 7 12.978 -18.983 8.023 1.00 21.56 C
ATOM 140 C6 DG A 7 11.942 -18.152 7.537 1.00 22.09 C
ATOM 141 O6 DG A 7 11.648 -17.007 7.886 1.00 25.96 O
ATOM 142 N1 DG A 7 11.190 -18.788 6.557 1.00 20.98 N
ATOM 143 C2 DG A 7 11.406 -20.058 6.102 1.00 20.90 C
ATOM 144 N2 DG A 7 10.578 -20.488 5.144 1.00 20.24 N
ATOM 145 N3 DG A 7 12.366 -20.850 6.553 1.00 22.20 N
ATOM 146 C4 DG A 7 13.117 -20.246 7.497 1.00 21.81 C
ATOM 147 P DG A 8 16.889 -24.635 5.420 1.00 31.76 P
ATOM 148 OP1 DG A 8 16.959 -26.052 5.032 1.00 32.02 O
ATOM 149 OP2 DG A 8 18.091 -23.799 5.319 1.00 34.12 O
ATOM 150 O5' DG A 8 15.802 -23.915 4.512 1.00 31.83 O
ATOM 151 C5' DG A 8 14.481 -24.437 4.353 1.00 28.94 C
ATOM 152 C4' DG A 8 13.900 -23.963 3.044 1.00 28.15 C
ATOM 153 O4' DG A 8 13.248 -22.687 3.221 1.00 28.69 O
ATOM 154 C3' DG A 8 14.910 -23.769 1.914 1.00 30.15 C
ATOM 155 O3' DG A 8 14.262 -24.195 0.717 1.00 31.65 O
ATOM 156 C2' DG A 8 15.163 -22.272 1.919 1.00 29.34 C
ATOM 157 C1' DG A 8 13.821 -21.710 2.359 1.00 28.61 C
ATOM 158 N9 DG A 8 13.884 -20.452 3.096 1.00 27.39 N
ATOM 159 C8 DG A 8 14.778 -20.108 4.082 1.00 26.42 C
ATOM 160 N7 DG A 8 14.564 -18.918 4.573 1.00 25.81 N
ATOM 161 C5 DG A 8 13.456 -18.453 3.879 1.00 26.03 C
ATOM 162 C6 DG A 8 12.765 -17.223 3.974 1.00 26.38 C
ATOM 163 O6 DG A 8 12.980 -16.275 4.734 1.00 30.14 O
ATOM 164 N1 DG A 8 11.707 -17.160 3.076 1.00 25.71 N
ATOM 165 C2 DG A 8 11.360 -18.150 2.197 1.00 25.31 C
ATOM 166 N2 DG A 8 10.317 -17.893 1.405 1.00 25.65 N
ATOM 167 N3 DG A 8 11.993 -19.304 2.099 1.00 26.72 N
ATOM 168 C4 DG A 8 13.021 -19.390 2.967 1.00 26.56 C
ATOM 169 P DG A 9 14.874 -24.260 -0.722 1.00 31.19 P
ATOM 170 OP1 DG A 9 14.137 -25.323 -1.414 1.00 35.19 O
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ATOM 172 O5' DG A 9 14.375 -22.960 -1.487 1.00 30.39 O
ATOM 173 C5' DG A 9 12.984 -22.729 -1.741 1.00 27.72 C
ATOM 174 C4' DG A 9 12.807 -21.451 -2.524 1.00 28.64 C
ATOM 175 O4' DG A 9 12.742 -20.310 -1.637 1.00 28.59 O
ATOM 176 C3' DG A 9 13.929 -21.144 -3.520 1.00 30.41 C
ATOM 177 O3' DG A 9 13.346 -20.714 -4.748 1.00 33.14 O
ATOM 178 C2' DG A 9 14.663 -19.970 -2.897 1.00 28.39 C
ATOM 179 C1' DG A 9 13.553 -19.265 -2.160 1.00 26.25 C
ATOM 180 N9 DG A 9 13.989 -18.439 -1.043 1.00 23.68 N
ATOM 181 C8 DG A 9 14.976 -18.729 -0.133 1.00 23.06 C
ATOM 182 N7 DG A 9 15.110 -17.814 0.785 1.00 22.81 N
ATOM 183 C5 DG A 9 14.152 -16.864 0.463 1.00 23.12 C
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ATOM 185 O6 DG A 9 14.316 -15.138 2.114 1.00 24.14 O
ATOM 186 N1 DG A 9 12.786 -14.987 0.439 1.00 23.13 N
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ATOM 188 N2 DG A 9 11.163 -14.679 -1.165 1.00 23.67 N
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ATOM 191 P DT A 10 13.995 -21.017 -6.144 1.00 34.62 P
ATOM 192 OP1 DT A 10 15.404 -20.605 -6.062 1.00 33.85 O
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ATOM 195 C5' DT A 10 12.750 -23.250 -6.820 1.00 40.85 C
ATOM 196 C4' DT A 10 13.100 -24.408 -7.731 1.00 44.77 C
ATOM 197 O4' DT A 10 13.144 -23.959 -9.109 1.00 46.19 O
ATOM 198 C3' DT A 10 14.441 -25.112 -7.464 1.00 45.54 C
ATOM 199 O3' DT A 10 14.327 -26.551 -7.576 1.00 48.10 O
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ATOM 217 O4' DT A 11 10.309 -29.437 -6.599 1.00 41.77 O
ATOM 218 C3' DT A 11 9.432 -27.259 -6.273 1.00 41.70 C
ATOM 219 O3' DT A 11 8.108 -27.245 -6.808 1.00 44.51 O
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ATOM 237 O4' DA A 12 6.192 -26.638 -3.809 1.00 35.84 O
ATOM 238 C3' DA A 12 5.610 -24.563 -2.818 1.00 37.77 C
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ATOM 258 O4' DG A 13 5.334 -19.450 1.021 1.00 32.62 O
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ATOM 296 P DG A 15 6.791 -11.738 -4.664 1.00 41.76 P
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ATOM 301 C4' DG A 15 7.043 -8.385 -2.649 1.00 41.44 C
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ATOM 303 C3' DG A 15 8.126 -7.719 -3.491 1.00 43.98 C
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ATOM 315 N2 DG A 15 11.883 -8.067 2.860 1.00 33.37 N
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ATOM 318 P DT A 16 8.397 -5.193 -4.285 1.00 52.40 P
ATOM 319 OP1 DT A 16 9.546 -5.596 -5.131 1.00 52.34 O
ATOM 320 OP2 DT A 16 8.450 -3.916 -3.553 1.00 54.33 O
ATOM 321 O5' DT A 16 7.059 -5.274 -5.143 1.00 58.55 O
ATOM 322 C5' DT A 16 6.235 -4.112 -5.366 1.00 68.86 C
ATOM 323 C4' DT A 16 5.299 -4.333 -6.533 1.00 75.04 C
ATOM 324 O4' DT A 16 5.553 -3.320 -7.534 1.00 79.44 O
ATOM 325 C3' DT A 16 5.445 -5.676 -7.249 1.00 78.76 C
ATOM 326 O3' DT A 16 4.192 -6.180 -7.733 1.00 83.73 O
ATOM 327 C2' DT A 16 6.387 -5.363 -8.398 1.00 82.53 C
ATOM 328 C1' DT A 16 6.139 -3.890 -8.698 1.00 81.78 C
ATOM 329 N1 DT A 16 7.374 -3.140 -8.994 1.00 86.58 N
ATOM 330 C2 DT A 16 7.378 -2.245 -10.043 1.00 89.49 C
ATOM 331 O2 DT A 16 6.400 -2.028 -10.740 1.00 90.64 O
ATOM 332 N3 DT A 16 8.577 -1.604 -10.242 1.00 91.15 N
ATOM 333 C4 DT A 16 9.743 -1.767 -9.517 1.00 89.12 C
ATOM 334 O4 DT A 16 10.743 -1.118 -9.813 1.00 88.78 O
ATOM 335 C5 DT A 16 9.668 -2.726 -8.436 1.00 86.64 C
ATOM 336 C7 DT A 16 10.882 -2.974 -7.597 1.00 84.32 C
ATOM 337 C6 DT A 16 8.503 -3.355 -8.233 1.00 84.45 C
ATOM 338 P DT A 17 4.037 -7.654 -8.385 1.00 86.17 P
ATOM 339 OP1 DT A 17 5.295 -8.100 -9.047 1.00 81.98 O
ATOM 340 OP2 DT A 17 2.766 -7.668 -9.155 1.00 85.85 O
ATOM 341 O5' DT A 17 3.843 -8.583 -7.105 1.00 87.93 O
ATOM 342 C5' DT A 17 2.540 -8.794 -6.525 1.00 85.30 C
ATOM 343 C4' DT A 17 2.665 -9.041 -5.040 1.00 80.68 C
ATOM 344 O4' DT A 17 3.423 -7.963 -4.446 1.00 75.19 O
ATOM 345 C3' DT A 17 1.328 -9.101 -4.297 1.00 83.54 C
ATOM 346 O3' DT A 17 1.151 -10.295 -3.512 1.00 87.86 O
ATOM 347 C2' DT A 17 1.265 -7.800 -3.517 1.00 81.91 C
ATOM 348 C1' DT A 17 2.715 -7.372 -3.375 1.00 77.57 C
ATOM 349 N1 DT A 17 2.905 -5.918 -3.462 1.00 77.22 N
ATOM 350 C2 DT A 17 3.907 -5.342 -2.715 1.00 73.16 C
ATOM 351 O2 DT A 17 4.652 -5.983 -1.993 1.00 67.85 O
ATOM 352 N3 DT A 17 4.004 -3.978 -2.845 1.00 76.71 N
ATOM 353 C4 DT A 17 3.221 -3.154 -3.633 1.00 77.38 C
ATOM 354 O4 DT A 17 3.433 -1.945 -3.653 1.00 76.12 O
ATOM 355 C5 DT A 17 2.186 -3.827 -4.387 1.00 79.61 C
ATOM 356 C7 DT A 17 1.283 -3.020 -5.265 1.00 80.93 C
ATOM 357 C6 DT A 17 2.082 -5.156 -4.264 1.00 80.38 C
ATOM 358 P DA A 18 1.876 -10.750 -2.150 1.00 85.16 P
ATOM 359 OP1 DA A 18 3.323 -10.848 -2.469 1.00 91.09 O
ATOM 360 OP2 DA A 18 1.157 -11.949 -1.654 1.00 79.12 O
ATOM 361 O5' DA A 18 1.666 -9.594 -1.073 1.00 80.73 O
ATOM 362 C5' DA A 18 2.804 -8.951 -0.466 1.00 77.10 C
ATOM 363 C4' DA A 18 2.381 -8.037 0.660 1.00 73.69 C
ATOM 364 O4' DA A 18 2.298 -6.664 0.206 1.00 77.40 O
ATOM 365 C3' DA A 18 1.029 -8.356 1.306 1.00 69.06 C
ATOM 366 O3' DA A 18 1.150 -8.280 2.730 1.00 59.32 O
ATOM 367 C2' DA A 18 0.151 -7.193 0.878 1.00 76.44 C
ATOM 368 C1' DA A 18 1.174 -6.077 0.830 1.00 79.94 C
ATOM 369 N9 DA A 18 0.802 -4.881 0.072 1.00 84.36 N
ATOM 370 C8 DA A 18 1.449 -3.670 0.074 1.00 83.05 C
ATOM 371 N7 DA A 18 0.887 -2.770 -0.695 1.00 88.21 N
ATOM 372 C5 DA A 18 -0.208 -3.429 -1.236 1.00 89.29 C
ATOM 373 C6 DA A 18 -1.212 -3.020 -2.133 1.00 91.26 C
ATOM 374 N6 DA A 18 -1.278 -1.798 -2.663 1.00 99.60 N
ATOM 375 N1 DA A 18 -2.161 -3.922 -2.467 1.00 90.31 N
ATOM 376 C2 DA A 18 -2.097 -5.147 -1.931 1.00 92.88 C
ATOM 377 N3 DA A 18 -1.204 -5.650 -1.081 1.00 90.89 N
ATOM 378 C4 DA A 18 -0.275 -4.729 -0.768 1.00 87.69 C
ATOM 379 P DG A 19 1.980 -9.258 3.675 1.00 52.78 P
ATOM 380 OP1 DG A 19 2.872 -10.133 2.871 1.00 52.66 O
ATOM 381 OP2 DG A 19 0.990 -9.863 4.598 1.00 50.73 O
ATOM 382 O5' DG A 19 2.914 -8.239 4.469 1.00 49.27 O
ATOM 383 C5' DG A 19 2.464 -7.540 5.646 1.00 44.71 C
ATOM 384 C4' DG A 19 3.619 -7.287 6.588 1.00 42.55 C
ATOM 385 O4' DG A 19 4.200 -8.547 7.005 1.00 42.60 O
ATOM 386 C3' DG A 19 4.779 -6.467 6.012 1.00 43.85 C
ATOM 387 O3' DG A 19 5.288 -5.602 7.033 1.00 44.94 O
ATOM 388 C2' DG A 19 5.830 -7.518 5.707 1.00 41.47 C
ATOM 389 C1' DG A 19 5.605 -8.465 6.861 1.00 39.77 C
ATOM 390 N9 DG A 19 6.121 -9.810 6.658 1.00 37.81 N
ATOM 391 C8 DG A 19 5.691 -10.742 5.745 1.00 37.30 C
ATOM 392 N7 DG A 19 6.372 -11.854 5.789 1.00 37.93 N
ATOM 393 C5 DG A 19 7.307 -11.644 6.793 1.00 36.57 C
ATOM 394 C6 DG A 19 8.323 -12.495 7.296 1.00 36.38 C
ATOM 395 O6 DG A 19 8.596 -13.652 6.959 1.00 39.02 O
ATOM 396 N1 DG A 19 9.049 -11.881 8.310 1.00 34.69 N
ATOM 397 C2 DG A 19 8.836 -10.609 8.775 1.00 36.47 C
ATOM 398 N2 DG A 19 9.637 -10.201 9.769 1.00 38.21 N
ATOM 399 N3 DG A 19 7.893 -9.805 8.317 1.00 37.76 N
ATOM 400 C4 DG A 19 7.169 -10.384 7.334 1.00 37.73 C
ATOM 401 P DG A 20 6.560 -4.658 6.881 1.00 44.50 P
ATOM 402 OP1 DG A 20 6.263 -3.480 7.722 1.00 46.73 O
ATOM 403 OP2 DG A 20 6.925 -4.481 5.457 1.00 43.01 O
ATOM 404 O5' DG A 20 7.734 -5.455 7.598 1.00 44.59 O
ATOM 405 C5' DG A 20 8.089 -5.175 8.955 1.00 41.61 C
ATOM 406 C4' DG A 20 9.590 -5.192 9.118 1.00 40.49 C
ATOM 407 O4' DG A 20 10.096 -6.524 8.893 1.00 40.09 O
ATOM 408 C3' DG A 20 10.369 -4.271 8.180 1.00 40.68 C
ATOM 409 O3' DG A 20 11.305 -3.568 9.001 1.00 43.08 O
ATOM 410 C2' DG A 20 10.989 -5.219 7.164 1.00 38.81 C
ATOM 411 C1' DG A 20 11.162 -6.499 7.956 1.00 37.12 C
ATOM 412 N9 DG A 20 11.086 -7.736 7.190 1.00 34.75 N
ATOM 413 C8 DG A 20 10.184 -8.039 6.201 1.00 33.92 C
ATOM 414 N7 DG A 20 10.307 -9.256 5.750 1.00 33.50 N
ATOM 415 C5 DG A 20 11.337 -9.798 6.504 1.00 32.62 C
ATOM 416 C6 DG A 20 11.922 -11.086 6.464 1.00 33.21 C
ATOM 417 O6 DG A 20 11.638 -12.042 5.732 1.00 36.26 O
ATOM 418 N1 DG A 20 12.941 -11.213 7.401 1.00 32.95 N
ATOM 419 C2 DG A 20 13.343 -10.231 8.267 1.00 30.18 C
ATOM 420 N2 DG A 20 14.334 -10.556 9.103 1.00 30.43 N
ATOM 421 N3 DG A 20 12.801 -9.030 8.320 1.00 31.50 N
ATOM 422 C4 DG A 20 11.819 -8.878 7.407 1.00 33.00 C
ATOM 423 P DG A 21 12.607 -2.810 8.491 1.00 44.19 P
ATOM 424 OP1 DG A 21 12.997 -1.916 9.597 1.00 45.12 O
ATOM 425 OP2 DG A 21 12.307 -2.262 7.148 1.00 43.61 O
ATOM 426 O5' DG A 21 13.762 -3.900 8.377 1.00 41.39 O
ATOM 427 C5' DG A 21 14.492 -4.346 9.534 1.00 36.96 C
ATOM 428 C4' DG A 21 15.834 -4.899 9.115 1.00 34.60 C
ATOM 429 O4' DG A 21 15.646 -6.162 8.446 1.00 34.53 O
ATOM 430 C3' DG A 21 16.616 -4.029 8.132 1.00 32.97 C
ATOM 431 O3' DG A 21 17.998 -4.108 8.464 1.00 33.32 O
ATOM 432 C2' DG A 21 16.393 -4.714 6.798 1.00 32.62 C
ATOM 433 C1' DG A 21 16.370 -6.157 7.224 1.00 31.69 C
ATOM 434 N9 DG A 21 15.697 -7.078 6.318 1.00 30.08 N
ATOM 435 C8 DG A 21 14.602 -6.822 5.532 1.00 29.60 C
ATOM 436 N7 DG A 21 14.189 -7.870 4.873 1.00 28.98 N
ATOM 437 C5 DG A 21 15.043 -8.886 5.277 1.00 28.88 C
ATOM 438 C6 DG A 21 15.077 -10.251 4.913 1.00 28.60 C
ATOM 439 O6 DG A 21 14.336 -10.858 4.135 1.00 30.23 O
ATOM 440 N1 DG A 21 16.101 -10.928 5.563 1.00 28.51 N
ATOM 441 C2 DG A 21 16.988 -10.362 6.442 1.00 26.80 C
ATOM 442 N2 DG A 21 17.919 -11.178 6.952 1.00 26.34 N
ATOM 443 N3 DG A 21 16.960 -9.093 6.798 1.00 27.83 N
ATOM 444 C4 DG A 21 15.972 -8.416 6.176 1.00 28.64 C
TER 445 DG A 21
HETATM 446 K K A 101 13.591 -13.489 4.016 1.00 29.79 K
HETATM 447 K K A 102 11.382 -14.683 6.279 1.00 26.37 K
HETATM 448 K K A 103 9.272 -16.060 8.657 0.50 19.52 K
HETATM 449 CAA 0DX A 104 24.659 -9.622 10.472 1.00 49.45 C
HETATM 450 CAB 0DX A 104 9.689 -17.487 -7.690 1.00 38.28 C
HETATM 451 OAE 0DX A 104 19.250 -17.069 -0.571 1.00 27.84 O
HETATM 452 OAF 0DX A 104 16.550 -10.100 2.536 1.00 27.48 O
HETATM 453 OAG 0DX A 104 21.295 -14.888 2.781 1.00 28.18 O
HETATM 454 OAH 0DX A 104 14.495 -12.163 -0.760 1.00 28.71 O
HETATM 455 CAI 0DX A 104 17.293 -15.232 -0.764 1.00 25.80 C
HETATM 456 CAJ 0DX A 104 18.470 -11.868 2.761 1.00 26.27 C
HETATM 457 CAK 0DX A 104 21.606 -10.800 4.831 1.00 37.08 C
HETATM 458 CAL 0DX A 104 14.238 -14.885 -3.822 1.00 28.71 C
HETATM 459 CAM 0DX A 104 22.323 -17.167 0.103 1.00 38.43 C
HETATM 460 CAN 0DX A 104 15.095 -8.604 0.636 1.00 33.54 C
HETATM 461 CAO 0DX A 104 20.397 -11.727 4.791 1.00 32.69 C
HETATM 462 CAP 0DX A 104 15.389 -15.138 -2.862 1.00 27.06 C
HETATM 463 CAQ 0DX A 104 22.853 -11.472 5.443 1.00 43.38 C
HETATM 464 CAR 0DX A 104 14.358 -15.898 -4.953 1.00 30.85 C
HETATM 465 CAS 0DX A 104 21.863 -18.448 -0.611 1.00 48.41 C
HETATM 466 CAT 0DX A 104 14.503 -7.865 -0.576 1.00 37.58 C
HETATM 467 CAU 0DX A 104 25.170 -10.535 8.296 1.00 51.11 C
HETATM 468 CAV 0DX A 104 22.924 -9.538 8.789 1.00 49.53 C
HETATM 469 CAW 0DX A 104 10.775 -16.806 -5.688 1.00 37.50 C
HETATM 470 CAX 0DX A 104 11.999 -16.843 -7.768 1.00 36.01 C
HETATM 471 CAY 0DX A 104 22.295 -21.523 1.663 1.00 57.77 C
HETATM 472 CAZ 0DX A 104 22.568 -22.160 -0.696 1.00 59.98 C
HETATM 473 CBA 0DX A 104 16.680 -4.988 -1.718 1.00 42.29 C
HETATM 474 CBB 0DX A 104 14.372 -4.272 -1.713 1.00 43.60 C
HETATM 475 CBC 0DX A 104 24.752 -10.675 6.813 1.00 48.44 C
HETATM 476 CBD 0DX A 104 22.560 -9.750 7.305 1.00 49.08 C
HETATM 477 CBE 0DX A 104 12.086 -16.736 -4.902 1.00 35.33 C
HETATM 478 CBF 0DX A 104 13.322 -16.679 -6.979 1.00 34.90 C
HETATM 479 CBG 0DX A 104 21.843 -20.125 1.239 1.00 54.68 C
HETATM 480 CBH 0DX A 104 22.137 -20.758 -1.140 1.00 55.44 C
HETATM 481 CBI 0DX A 104 16.188 -6.408 -1.471 1.00 42.60 C
HETATM 482 CBJ 0DX A 104 13.885 -5.675 -1.338 1.00 41.61 C
HETATM 483 CBK 0DX A 104 21.415 -16.990 1.300 1.00 32.54 C
HETATM 484 CBL 0DX A 104 14.487 -10.019 0.833 1.00 29.94 C
HETATM 485 NBM 0DX A 104 20.451 -12.746 3.710 1.00 29.98 N
HETATM 486 NBN 0DX A 104 15.326 -14.262 -1.681 1.00 26.43 N
HETATM 487 CBO 0DX A 104 19.450 -12.850 2.827 1.00 27.66 C
HETATM 488 CBP 0DX A 104 16.323 -14.234 -0.804 1.00 26.30 C
HETATM 489 CBQ 0DX A 104 19.313 -16.123 0.217 1.00 28.61 C
HETATM 490 CBR 0DX A 104 16.499 -11.030 1.761 1.00 26.77 C
HETATM 491 CBS 0DX A 104 20.374 -14.958 1.986 1.00 27.92 C
HETATM 492 CBT 0DX A 104 15.419 -12.132 0.043 1.00 27.22 C
HETATM 493 CBU 0DX A 104 18.321 -15.141 0.156 1.00 26.92 C
HETATM 494 CBV 0DX A 104 17.461 -11.993 1.831 1.00 26.08 C
HETATM 495 CBW 0DX A 104 19.414 -13.950 1.955 1.00 27.55 C
HETATM 496 CBX 0DX A 104 16.362 -13.153 0.071 1.00 26.56 C
HETATM 497 CBY 0DX A 104 18.376 -14.056 1.025 1.00 27.03 C
HETATM 498 CBZ 0DX A 104 17.397 -13.072 0.981 1.00 26.48 C
HETATM 499 NCA 0DX A 104 24.387 -9.508 9.030 1.00 50.74 N
HETATM 500 NCB 0DX A 104 10.964 -17.517 -6.968 1.00 37.21 N
HETATM 501 OCC 0DX A 104 21.988 -22.487 0.607 1.00 61.55 O
HETATM 502 OCD 0DX A 104 15.658 -4.304 -2.430 1.00 44.13 O
HETATM 503 NCE 0DX A 104 23.303 -10.903 6.744 1.00 48.18 N
HETATM 504 NCF 0DX A 104 13.100 -16.000 -5.690 1.00 34.36 N
HETATM 505 NCG 0DX A 104 22.399 -19.736 -0.092 1.00 55.00 N
HETATM 506 NCH 0DX A 104 14.946 -6.459 -0.677 1.00 40.76 N
HETATM 507 NCI 0DX A 104 20.329 -16.000 1.135 1.00 29.44 N
HETATM 508 NCJ 0DX A 104 15.508 -11.094 0.879 1.00 27.29 N
HETATM 509 O HOH A 201 9.061 -5.685 3.958 1.00 29.19 O
HETATM 510 O HOH A 202 12.594 -8.140 -3.219 1.00 46.02 O
HETATM 511 O HOH A 203 9.937 -18.575 -1.891 1.00 34.68 O
HETATM 512 O HOH A 204 9.143 -22.399 -0.808 1.00 60.81 O
HETATM 513 O HOH A 205 10.187 -25.602 -2.397 1.00 50.32 O
HETATM 514 O HOH A 206 12.096 -7.372 10.811 1.00 40.33 O
HETATM 515 O HOH A 207 16.470 -8.520 10.141 1.00 25.53 O
HETATM 516 O HOH A 208 18.346 -20.189 9.435 1.00 31.06 O
HETATM 517 O AHOH A 209 18.175 -21.059 4.480 0.50 17.75 O
HETATM 518 O BHOH A 209 18.948 -20.019 5.627 0.50 14.54 O
HETATM 519 O HOH A 210 17.496 -20.921 -0.623 1.00 28.07 O
HETATM 520 O HOH A 211 18.647 -20.200 1.603 1.00 28.03 O
HETATM 521 O HOH A 212 18.404 -18.551 -2.702 1.00 36.23 O
HETATM 522 O HOH A 213 16.389 -16.798 13.864 1.00 35.42 O
HETATM 523 O HOH A 214 17.046 -20.451 12.605 1.00 39.53 O
HETATM 524 O HOH A 215 18.306 -21.493 15.001 1.00 43.68 O
HETATM 525 O HOH A 216 10.868 -22.235 1.752 1.00 36.72 O
HETATM 526 O HOH A 217 18.508 -16.684 15.260 1.00 34.76 O
HETATM 527 O HOH A 218 4.285 -5.451 1.971 1.00 38.52 O
HETATM 528 O HOH A 219 13.470 -3.676 4.493 1.00 42.91 O
HETATM 529 O HOH A 220 19.631 -8.016 8.302 1.00 47.35 O
HETATM 530 O HOH A 221 8.010 -21.836 -4.427 1.00 51.50 O
HETATM 531 O HOH A 222 10.326 -24.150 -4.885 1.00 44.23 O
HETATM 532 O HOH A 223 11.560 -29.726 0.236 1.00 39.40 O
HETATM 533 O HOH A 224 9.784 -19.857 -5.451 1.00 49.85 O
HETATM 534 O HOH A 225 13.056 -10.716 -2.759 1.00 39.25 O
CONECT 14 447 448
CONECT 36 446 447
CONECT 58 446
CONECT 141 447 448
CONECT 163 446 447
CONECT 185 446
CONECT 268 447 448
CONECT 290 446 447
CONECT 312 446
CONECT 395 447 448
CONECT 417 446 447
CONECT 439 446
CONECT 446 36 58 163 185
CONECT 446 290 312 417 439
CONECT 447 14 36 141 163
CONECT 447 268 290 395 417
CONECT 448 14 141 268 395
CONECT 449 499
CONECT 450 500
CONECT 451 489
CONECT 452 490
CONECT 453 491
CONECT 454 492
CONECT 455 488 493
CONECT 456 487 494
CONECT 457 461 463
CONECT 458 462 464
CONECT 459 465 483
CONECT 460 466 484
CONECT 461 457 485
CONECT 462 458 486
CONECT 463 457 503
CONECT 464 458 504
CONECT 465 459 505
CONECT 466 460 506
CONECT 467 475 499
CONECT 468 476 499
CONECT 469 477 500
CONECT 470 478 500
CONECT 471 479 501
CONECT 472 480 501
CONECT 473 481 502
CONECT 474 482 502
CONECT 475 467 503
CONECT 476 468 503
CONECT 477 469 504
CONECT 478 470 504
CONECT 479 471 505
CONECT 480 472 505
CONECT 481 473 506
CONECT 482 474 506
CONECT 483 459 507
CONECT 484 460 508
CONECT 485 461 487
CONECT 486 462 488
CONECT 487 456 485 495
CONECT 488 455 486 496
CONECT 489 451 493 507
CONECT 490 452 494 508
CONECT 491 453 495 507
CONECT 492 454 496 508
CONECT 493 455 489 497
CONECT 494 456 490 498
CONECT 495 487 491 497
CONECT 496 488 492 498
CONECT 497 493 495 498
CONECT 498 494 496 497
CONECT 499 449 467 468
CONECT 500 450 469 470
CONECT 501 471 472
CONECT 502 473 474
CONECT 503 463 475 476
CONECT 504 464 477 478
CONECT 505 465 479 480
CONECT 506 466 481 482
CONECT 507 483 489 491
CONECT 508 484 490 492
MASTER 339 0 4 0 0 0 11 6 532 1 77 2
END
