Structural Classification of Proteins
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Fold: RuvA C-terminal domain-like

3 helices; bundle, right-handed twist

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RuvA C-terminal domain-like [46928]
    3 helices; bundle, right-handed twist

Superfamilies:

  1. DNA helicase RuvA subunit, C-terminal domain [46929] (1)
    possibly related to UBA-like domains
    link to SUPERFAMILY database - Superfamily
    1. DNA helicase RuvA subunit, C-terminal domain [46930] (3)
      1. DNA helicase RuvA subunit, C-terminal domain [46931]
        tetramer; binds Holliday junction
        1. Escherichia coli [TaxId: 562] [46932] (4) picpic
        2. Mycobacterium leprae [TaxId: 1769] [46933] (1) picpic
        3. Thermus thermophilus [TaxId: 274] [81702] (2) picpic
  2. UBA-like [46934] (4)
    link to SUPERFAMILY database - Superfamily
    1. UBA domain [46935] (24)
      1. DNA repair protein Hhr23a [46936]
        1. Human (Homo sapiens) [TaxId: 9606] [46937] (5) picpic
      2. Sequestosome 1 (Sqstm1) [101063]
        ubiquitin-binding protein p62
        1. Human (Homo sapiens) [TaxId: 9606] [101064] (4) picpic
      3. Auxilin-like protein Swa2p [101065]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101066] (1) picpic
      4. Ubiquitin-protein ligase ubc1 [109719]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109720] (1) picpic
          SQ P21734
      5. Ubiquitin carboxyl-terminal hydrolase 25 [109721]
        1. Mouse (Mus musculus) [TaxId: 10090] [109722] (1) picpic
          SQ P57080 1-67
      6. NEDD8 ultimate buster-1 (Nub1) [116824]
        1. Mouse (Mus musculus) [TaxId: 10090] [116825] (1) picpic
          SQ P54729 469-540
      7. Ubiquitin isopeptidase T [116826]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116827] (2) picpic
          SQ Q9LJT6 594-665; Q8L6Y1 651-710
      8. Rhomboid family protein At3g58460 [116828]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116829] (1) picpic
          SQ Q8LB17 342-401
      9. Ubiquitin-associated protein 1, UBAP1 [116830]
        1. Human (Homo sapiens) [TaxId: 9606] [116831] (1) picpic
          SQ Q9NZ09 381-430
      10. UBA/UBX 33.3 kDa protein [116832]
        1. Mouse (Mus musculus) [TaxId: 10090] [116833] (1) picpic
          SQ Q922Y1 2-52
      11. Tudor domain containing protein 3, TDRD3 [116834]
        1. Human (Homo sapiens) [TaxId: 9606] [116835] (1) picpic
          SQ Q9H7E2 194-243
      12. DSK2 [140323]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140324] (28) picpic
          SQ P48510 328-371! SQ P48510 328-373
      13. Ubiquilin-3 [140325]
        1. Human (Homo sapiens) [TaxId: 9606] [140326] (1) picpic
          SQ Q9H347 615-655
      14. Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain [140327]
        1. Human (Homo sapiens) [TaxId: 9606] [140328] (5) picpic
          SQ P61086 157-198
      15. Cbl-interacting protein p70, STS1 [140329]
        1. Human (Homo sapiens) [TaxId: 9606] [140330] (1) picpic
          SQ Q8TF42 26-76
      16. Ubiquitin-associated protein 2-like Ubap2l [140331]
        RSGI ruh-015
        1. Mouse (Mus musculus) [TaxId: 10090] [140332] (1) picpic
          SQ Q80X50 19-109
      17. Trinucleotide repeat containing 6c protein, TNRC6C [140333]
        1. Human (Homo sapiens) [TaxId: 9606] [140334] (1) picpic
          SQ Q86UE5 197-268
      18. Suppressor of T-cell receptor signaling 2 (STS-2) [140335]
        1. Human (Homo sapiens) [TaxId: 9606] [140336] (1) picpic
          SQ P57075 20-70
      19. Migration-inducing protein 19 NBR1 [140337]
        Next to Brca1 gene 1
        1. Human (Homo sapiens) [TaxId: 9606] [140338] (1) picpic
          SQ Q14596 916-956
      20. Ubiquilin-like protein Ubqlnl [140339]
        1. Mouse (Mus musculus) [TaxId: 10090] [140340] (1) picpic
          SQ Q14DL0 561-610
      21. Serine/threonine protein kinase LATS2 [140341]
        1. Mouse (Mus musculus) [TaxId: 10090] [140342] (1) picpic
          SQ Q7TSJ6 98-138
      22. 4931431F19Rik [140343]
        Riken cDNA clone 4931431f19
        1. Mouse (Mus musculus) [TaxId: 10090] [140344] (1) picpic
          SQ Q9D4I8 447-507
      23. UBA-domain protein mud1 [158356]
        1. Schizosaccharomyces pombe [TaxId: 4896] [158357] (2) picpic
          SQ Q10256 295-332
      24. Endocytic protein Ede1, YBL047C [158358]
        1. Saccharomyces cerevisiae [TaxId: 4932] [158359] (1) picpic
          SQ P34216 1339-1381
    2. TS-N domain [63423] (4)
      1. Elongation factor Ts (EF-Ts), N-terminal domain [63424]
        1. Escherichia coli [TaxId: 562] [63425] (1) picpic
        2. Thermus thermophilus [TaxId: 274] [63426] (1) picpic
        3. Cow (Bos taurus), mitochondrial [TaxId: 9913] [116836] (1) picpic
          SQ P43896 56-331
        4. Human (Homo sapiens), mitochondrial [TaxId: 9606] [140345] (1) picpic
          SQ P43897 45-95
    3. TAP-C domain-like [68973] (2)
      1. FG-binding, C-terminal domain of TAP [68974]
        1. Human (Homo sapiens) [TaxId: 9606] [68975] (2) picpic
      2. NSFL1 (p97 ATPase) cofactor p47, UBA-like domain [101067]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [101068] (1) picpic
    4. CUE domain [88995] (4)
      Pfam 02845
      1. Vacuolar protein sorting-associated protein vps9 [88996]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88997] (2) picpic
      2. Protein Cue2 (hypothetical protein YKL090W) [88998]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88999] (1) picpic
      3. Toll-interacting protein [116837]
        1. Human (Homo sapiens) [TaxId: 9606] [116838] (1) picpic
          SQ Q9H0E2 229-274
      4. Activating signal cointegrator 1 complex subunit 2 [140346]
        1. Human (Homo sapiens) [TaxId: 9606] [140347] (1) picpic
          SQ Q9H1I8 463-525
  3. post-HMGL domain-like [89000] (2)
    link to SUPERFAMILY database - Superfamily
    1. DmpG/LeuA communication domain-like [89001] (2)
      1. 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain [89002]
        1. Pseudomonas sp. [TaxId: 306] [89003] (1) picpic
          gene product DmpG
      2. 2-isopropylmalate synthase LeuA, communication domain [109723]
        1. Mycobacterium tuberculosis [TaxId: 1773] [109724] (1) picpic
          SQ P96420
    2. Conserved carboxylase domain [109725] (1)
      Pfam 02436
      duplication: contains two domains of this fold, connected with a helical linker
      1. Transcarboxylase 5S subunit, C-terminal domain [109726]
        1. Propionibacterium freudenreichii shermanii [TaxId: 1752] [109727] (6) picpic
          SQ Q70AC7 3-474; d1: 307-367; d2: 416-459
  4. CRAL/TRIO N-terminal domain [46938] (1)
    link to SUPERFAMILY database - Superfamily
    1. CRAL/TRIO N-terminal domain [46939] (3)
      1. N-terminal domain of phosphatidylinositol transfer protein sec14p [46940]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46941] (1) picpic
      2. Alpha-tocopherol transfer protein [101069]
        1. Human (Homo sapiens) [TaxId: 9606] [101070] (3) picpic
      3. Supernatant protein factor (SPF), N-terminal domain [101071]
        Sec14-like protein 2; contains extra C-terminal beta-sandwich domain
        1. Human (Homo sapiens) [TaxId: 9606] [101072] (2) picpic
          SQ O76054
  5. Elongation factor TFIIS domain 2 [46942] (1)
    link to SUPERFAMILY database - Superfamily
    1. Elongation factor TFIIS domain 2 [46943] (1)
      1. Elongation factor TFIIS domain 2 [46944]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46945] (1) picpic
  6. Double-stranded DNA-binding domain [46950] (1)
    link to SUPERFAMILY database - Superfamily
    1. Double-stranded DNA-binding domain [46951] (2)
      1. Hypothetical protein MTH1615 [46952]
        1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [46953] (1) picpic
      2. Programmed cell death protein 5 [140348]
        1. Human (Homo sapiens) [TaxId: 9606] [140349] (1) picpic
          SQ O14737 8-112
  7. Hypothetical protein AF0491, middle domain [109728] (1)
    link to SUPERFAMILY database - Superfamily
    1. Hypothetical protein AF0491, middle domain [109729] (1)
      1. Hypothetical protein AF0491, middle domain [109730]
        1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [109731] (2) picpic
          SQ O29759
  8. HBS1-like domain [109732] (1)
    possibly related to UBA-like domains
    link to SUPERFAMILY database - Superfamily
    1. HBS1-like domain [109733] (1)
      1. HBS1-like protein [109734]
        1. Mouse (Mus musculus) [TaxId: 10090] [109735] (1) picpic
          SQ Q69ZS7 51-120
  9. FGAM synthase PurL, linker domain [109736] (1)
    link to SUPERFAMILY database - Superfamily
    1. FGAM synthase PurL, linker domain [109737] (1)
      1. FGAM synthase PurL, linker domain [109738]
        1. Salmonella typhimurium [TaxId: 90371] [109739] (1) picpic
          SQ P74881
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk