Structural Classification of Proteins
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Fold: Left-handed superhelix

core: 4-5 helices; bundle; left-handed superhelix

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Left-handed superhelix [47916]
    core: 4-5 helices; bundle; left-handed superhelix

Superfamilies:

  1. C-terminal domain of alpha and beta subunits of F1 ATP synthase [47917] (1)
    link to SUPERFAMILY database - Superfamily
    1. C-terminal domain of alpha and beta subunits of F1 ATP synthase [47918] (8)
      1. F1 ATP synthase alpha subunit, domain 3 [88886]
        1. Cow (Bos taurus) [TaxId: 9913] [88893] (18)
          SQ P19483
          1. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfa1
            complexed with anp, mg
            1. region a:380-510 [145683] picpiclink
          2. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfa1
            complexed with anp, mg
            1. region b:380-510 [145686] picpiclink
          3. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfa1
            complexed with anp, mg
            1. region c:380-510 [145689] picpiclink
          4. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfa1
            complexed with adp, anp, azi, mg, po4
            1. region a:380-510 [145033] picpiclink
          5. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfa1
            complexed with adp, anp, azi, mg, po4
            1. region b:380-510 [145036] picpiclink
          6. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfa1
            complexed with adp, anp, azi, mg, po4
            1. region c:380-510 [145039] picpiclink
          7. 1w0j picpicxrefxrefxrefxrefxrefxref
            complexed with adp, bef, gol, mo3, mo4, po4
            1. region a:380-510 [108989] picpiclink
            2. region b:380-510 [108992] picpiclink
            3. region c:380-510 [108995] picpiclink
          8. 1e79 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with adp, atp, cry, glh, mg, so4
            1. region a:380-510 [18269] picpiclink
            2. region b:380-510 [18270] picpiclink
            3. region c:380-510 [18271] picpiclink
          9. 1w0k picpicxrefxrefxrefxrefxrefxref
            complexed with adp, gol, mg, po4
            1. region a:380-510 [109008] picpiclink
            2. region b:380-510 [109011] picpiclink
            3. region c:380-510 [109014] picpiclink
          10. 1h8e picpicxrefxrefxrefxrefxrefxrefxrefxref
            complexed with adp, alf, gol, mg, so4
            1. region a:380-510 [60738] picpiclink
            2. region b:380-510 [60741] picpiclink
            3. region c:380-510 [60744] picpiclink
          11. 1nbm picpicxrefxrefxrefxrefxrefxref
            complexed with adp, atp, mg, po4, tyn
            1. region a:380-510 [18287] picpiclink
            2. region b:380-510 [18288] picpiclink
            3. region c:380-510 [18289] picpiclink
          12. 1e1r picpicxrefxrefxrefxrefxrefxref
            complexed with adp, af3, anp, mg, po4
            1. region a:380-510 [18275] picpiclink
            2. region b:380-510 [18276] picpiclink
            3. region c:380-510 [18277] picpiclink
          13. 1bmf picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, mg
            1. region a:380-510 [18281] picpiclink
            2. region b:380-510 [18282] picpiclink
            3. region c:380-510 [18283] picpiclink
          14. 1e1q picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, mg, po4
            1. region a:380-510 [18293] picpiclink
            2. region b:380-510 [18294] picpiclink
            3. region c:380-510 [18295] picpiclink
          15. 1efr picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, app, bal, cpi, mg, tlx
            1. region a:380-510 [18299] picpiclink
            2. region b:380-510 [18300] picpiclink
            3. region c:380-510 [18301] picpiclink
          16. 1ohh picpicxrefxrefxrefxrefxrefxrefxref
            complexed with anp, mg
            1. region a:380-510 [87015] picpiclink
            2. region b:380-510 [87018] picpiclink
            3. region c:380-510 [87021] picpiclink
          17. 1h8h picpicxrefxrefxrefxrefxrefxref
            complexed with adp, atp, gol, mg, po4
            1. region a:380-510 [60759] picpiclink
            2. region b:380-510 [60762] picpiclink
            3. region c:380-510 [60765] picpiclink
          18. 1cow picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, aur, mg
            1. region a:380-510 [18305] picpiclink
            2. region b:380-510 [18306] picpiclink
            3. region c:380-510 [18307] picpiclink
        2. Rat (Rattus norvegicus) [TaxId: 10116] [88925] (2)
          1. 1mab picpicxrefxrefxrefxrefxrefxref
            complexed with adp, atp, mg, po4
            1. region a:380-510 [18311] picpiclink
          2. 2f43 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1maba1
            complexed with adp, atp, mg, vo4
            1. region a:380-502 [145131] picpiclink
        3. Bacillus sp., strain ps3 [TaxId: 1409] [88926] (1)
          1. 1sky picpicxrefxrefxrefxrefxref
            complexed with so4
            1. region b:372-502 [18313] picpiclink
        4. Spinach (Spinacia oleracea), chloroplast [TaxId: 3562] [88927] (2)
          1. 1fx0 picpicxrefxrefxrefxrefxref
            1. region a:373-501 [60080] picpiclink
          2. 1kmh picpicxrefxrefxrefxrefxref
            complexed with ttx
            1. region a:373-501 [72745] picpiclink
      2. F1 ATP synthase beta subunit, domain 3 [88928]
        1. Cow (Bos taurus) [TaxId: 9913] [88929] (12)
          SQ P00829
          1. 1w0j picpicxrefxrefxrefxrefxrefxref
            complexed with adp, bef, gol, mo3, mo4, po4
            1. region d:358-474 [108998] picpiclink
            2. region e:358-474 [109001] picpiclink
            3. region f:358-474 [109004] picpiclink
          2. 1e79 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with adp, atp, cry, glh, mg, so4
            1. region d:358-475 [18272] picpiclink
            2. region e:358-474 [18273] picpiclink
            3. region f:358-474 [18274] picpiclink
          3. 1w0k picpicxrefxrefxrefxrefxrefxref
            complexed with adp, gol, mg, po4
            1. region d:358-474 [109017] picpiclink
            2. region e:358-474 [109020] picpiclink
            3. region f:358-474 [109023] picpiclink
          4. 1h8e picpicxrefxrefxrefxrefxrefxrefxrefxref
            complexed with adp, alf, gol, mg, so4
            1. region d:358-475 [60747] picpiclink
            2. region e:358-464 [60750] picpiclink
            3. region f:358-474 [60753] picpiclink
          5. 1nbm picpicxrefxrefxrefxrefxrefxref
            complexed with adp, atp, mg, po4, tyn
            1. region d:358-475 [18290] picpiclink
            2. region e:358-474 [18291] picpiclink
            3. region f:358-474 [18292] picpiclink
          6. 1e1r picpicxrefxrefxrefxrefxrefxref
            complexed with adp, af3, anp, mg, po4
            1. region d:358-475 [18278] picpiclink
            2. region e:358-474 [18279] picpiclink
            3. region f:358-474 [18280] picpiclink
          7. 1bmf picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, mg
            1. region d:358-475 [18284] picpiclink
            2. region e:358-474 [18285] picpiclink
            3. region f:358-474 [18286] picpiclink
          8. 1e1q picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, mg, po4
            1. region d:358-475 [18296] picpiclink
            2. region e:358-474 [18297] picpiclink
            3. region f:358-474 [18298] picpiclink
          9. 1efr picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, app, bal, cpi, mg, tlx
            1. region d:358-475 [18302] picpiclink
            2. region e:358-474 [18303] picpiclink
            3. region f:358-474 [18304] picpiclink
          10. 1ohh picpicxrefxrefxrefxrefxrefxrefxref
            complexed with anp, mg
            1. region d:358-477 [87024] picpiclink
            2. region e:358-474 [87027] picpiclink
            3. region f:358-474 [87030] picpiclink
          11. 1h8h picpicxrefxrefxrefxrefxrefxref
            complexed with adp, atp, gol, mg, po4
            1. region d:358-475 [60768] picpiclink
            2. region e:358-474 [60771] picpiclink
            3. region f:358-474 [60774] picpiclink
          12. 1cow picpicxrefxrefxrefxrefxrefxref
            complexed with adp, anp, aur, mg
            1. region d:358-475 [18308] picpiclink
            2. region e:358-474 [18309] picpiclink
            3. region f:358-474 [18310] picpiclink
        2. Rat (Rattus norvegicus) [TaxId: 10116] [88930] (8)
          1. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with anp, mg
            1. region d:358-475 [138263] picpiclink
          2. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with anp, mg
            1. region e:358-474 [138266] picpiclink
          3. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with anp, mg
            1. region f:358-474 [138269] picpiclink
          4. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with adp, anp, azi, mg, po4
            1. region d:358-475 [130553] picpiclink
          5. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with adp, anp, azi, mg, po4
            1. region e:358-474 [130556] picpiclink
          6. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with adp, anp, azi, mg, po4
            1. region f:358-474 [130559] picpiclink
          7. 1mab picpicxrefxrefxrefxrefxrefxref
            complexed with adp, atp, mg, po4
            1. region b:358-477 [18312] picpiclink
          8. 2f43 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1mabb1
            complexed with adp, atp, mg, vo4
            1. region b:358-477 [132908] picpiclink
        3. Bacillus sp., strain ps3 [TaxId: 1409] [88931] (1)
          1. 1sky picpicxrefxrefxrefxrefxref
            complexed with so4
            1. region e:357-470 [18314] picpiclink
        4. Spinach (Spinacia oleracea), chloroplast [TaxId: 3562] [88932] (2)
          1. 1fx0 picpicxrefxrefxrefxrefxref
            1. region b:378-485 [60083] picpiclink
          2. 1kmh picpicxrefxrefxrefxrefxref
            complexed with ttx
            1. region b:378-485 [72748] picpiclink
  2. Ypt/Rab-GAP domain of gyp1p [47923] (1)
    link to SUPERFAMILY database - Superfamily
    1. Ypt/Rab-GAP domain of gyp1p [47924] (1)
      duplication: contains two similar domains of this fold
      1. Ypt/Rab-GAP domain of gyp1p [47925]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47926] (3)
          1. 1fkm picpic
            1. region a:249-442 [18315] picpiclink
            2. region a:443-630 [18316] picpiclink
          2. 2g77 picpicxref
            automatically matched to d1fkma1
            complexed with af3, gdp, mg; mutant
            1. region a:249-442 [134730] picpiclink
          3. 2g77 picpicxref
            automatically matched to d1fkma2
            complexed with af3, gdp, mg; mutant
            1. region a:443-630 [134731] picpiclink
  3. 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain [69055] (1)
    link to SUPERFAMILY database - Superfamily
    1. 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain [69056] (2)
      1. 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain [69057]
        1. Escherichia coli [TaxId: 562] [69058] (12)
          SQ P45568
          1. 1q0q picpicxrefxref
            complexed with dxp, ndp
            1. region a:301-398 [104464] picpiclink
            2. region b:301-398 [104467] picpiclink
          2. 1q0h picpicxrefxref
            complexed with cit, fom, ndp
            1. region a:301-398 [104440] picpiclink
          3. 1jvs picpicxrefxref
            complexed with mse, ndp, so4
            1. region a:301-399 [77187] picpiclink
            2. region b:301-397 [77190] picpiclink
          4. 2egh picpicxrefxrefxrefxref
            automatically matched to d1jvsa1
            complexed with fom, mg, ndp
            1. region a:301-399 [132121] picpiclink
          5. 2egh picpicxrefxrefxrefxref
            automatically matched to d1jvsa1
            complexed with fom, mg, ndp
            1. region b:301-397 [132124] picpiclink
          6. 1t1r picpicxrefxref
            complexed with imb, so4
            1. region a:301-397 [106262] picpiclink
            2. region b:301-397 [106266] picpiclink
          7. 1t1s picpicxrefxref
            complexed with cbq, mg, so4
            1. region a:301-397 [106270] picpiclink
            2. region b:301-397 [106274] picpiclink
          8. 1q0l picpicxrefxref
            complexed with fom, ndp
            1. region a:301-398 [104455] picpiclink
          9. 1ono picpicxrefxref
            complexed with mw3
            1. region a:301-397 [87159] picpiclink
            2. region b:301-397 [87162] picpiclink
          10. 1k5h picpicxrefxref
            1. region a:301-398 [68192] picpiclink
            2. region b:301-396 [68195] picpiclink
            3. region c:301-398 [68198] picpiclink
          11. 1onn picpicxrefxref
            1. region a:301-397 [87153] picpiclink
            2. region b:301-397 [87156] picpiclink
          12. 1onp picpicxrefxref
            complexed with fom, mw1
            1. region a:301-397 [87165] picpiclink
            2. region b:301-397 [87168] picpiclink
        2. Zymomonas mobilis [TaxId: 542] [109891] (2)
          SQ Q9X5F2
          1. 1r0k picpicxrefxref
            complexed with act
            1. region a:291-385 [104723] picpiclink
            2. region b:291-385 [104726] picpiclink
            3. region c:291-385 [104729] picpiclink
            4. region d:291-385 [104732] picpiclink
          2. 1r0l picpicxrefxref
            complexed with ndp
            1. region a:291-385 [104735] picpiclink
            2. region b:291-385 [104738] picpiclink
            3. region c:291-385 [104741] picpiclink
            4. region d:291-385 [104744] picpiclink
  4. BH3980-like [158560] (1)
    1. BH3980-like [158561] (3)
      Pfam 06304; DUF1048
      1. Hypothetical protein BCE3448 [158562]
        1. Bacillus cereus [TaxId: 1396] [158563] (2)
          SQ Q734F7 14-95
          1. 2o3l picpic
            complexed with gol, so4
            1. region a:14-95 [148579] picpiclink
          2. 2o3l picpic
            automatically matched to 2O3L A:14-95
            complexed with gol, so4
            1. region b:14-94 [148580] picpiclink
      2. Uncharacterized protein BH3980 [158564]
        1. Bacillus halodurans [TaxId: 86665] [158565] (1)
          SQ Q9K5V7 1-112
          1. 2hh6 picpic
            1. region a:1-112 [147285] picpiclink
      3. Uncharacterized protein BH3976 [158566]
        1. Bacillus halodurans [TaxId: 86665] [158567] (1)
          SQ Q9K5W1 16-105
          1. 2o4t picpic
            complexed with peg
            1. region a:16-105 [148590] picpiclink

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site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk