Structural Classification of Proteins
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Superfamily: RNase III domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RNase III domain-like [69064]
    core: 5 helices; one helix is surrounded by the others
  4. Superfamily: RNase III domain-like [69065]
    link to SUPERFAMILY database - Superfamily

Families:

  1. RNase III catalytic domain-like [69066] (3)
    Pfam 00636
    1. RNase III endonuclease catalytic domain [69067]
      1. Thermotoga maritima [TaxId: 2336] [81817] (1)
        1. 1o0w picpicxref
          CASP5
          1. region a:-1-167 [80751] picpiclink
          2. region b:-1-167 [80753] picpiclink
      2. Aquifex aeolicus [TaxId: 63363] [69068] (22)
        1. 2nug picpicxrefxref
          automatically matched to d1rc7a1
          complexed with mg
          1. region a:3-150 [148452] picpiclink
        2. 2nug picpicxrefxref
          automatically matched to d1rc7a1
          complexed with mg
          1. region b:3-150 [148454] picpiclink
        3. 2ez6 picpicxrefxref
          automatically matched to d1rc7a1
          complexed with mg; mutant
          1. region a:3-150 [132616] picpiclink
        4. 2ez6 picpicxrefxref
          automatically matched to d1rc7a1
          complexed with mg; mutant
          1. region b:3-150 [132618] picpiclink
        5. 1rc7 picpicxref
          complexed with trs; mutant
          1. region a:1-150 [97289] picpiclink
        6. 1yz9 picpicxrefxref
          automatically matched to d1rc7a1
          complexed with so4; mutant
          1. region a:1-150 [124271] picpiclink
        7. 1yz9 picpicxrefxref
          automatically matched to d1rc7a1
          complexed with so4; mutant
          1. region b:3-150 [124273] picpiclink
        8. 1yyk picpicxrefxref
          automatically matched to d1rc7a1
          complexed with trs
          1. region a:1-150 [124218] picpiclink
        9. 1yyk picpicxrefxref
          automatically matched to d1rc7a1
          complexed with trs
          1. region b:1-150 [124220] picpiclink
        10. 2nuf picpicxrefxref
          automatically matched to d1rc7a1
          complexed with mg
          1. region a:2-150 [148448] picpiclink
        11. 2nuf picpicxrefxref
          automatically matched to d1rc7a1
          complexed with mg
          1. region b:2-150 [148450] picpiclink
        12. 1jfz picpic
          complexed with mn
          1. chain a [66655] picpiclink
          2. chain b [66656] picpiclink
          3. chain c [66657] picpiclink
          4. chain d [66658] picpiclink
        13. 1i4s picpic
          1. chain a [66026] picpiclink
          2. chain b [66027] picpiclink
        14. 1yyo picpicxrefxref
          automatically matched to d1rc7a1
          complexed with trs; mutant
          1. region a:1-150 [124244] picpiclink
        15. 1yyo picpicxrefxref
          automatically matched to d1rc7a1
          complexed with trs; mutant
          1. region b:2-150 [124246] picpiclink
        16. 1rc5 picpic
          complexed with mg
          1. chain a [97283] picpiclink
          2. chain b [97284] picpiclink
          3. chain c [97285] picpiclink
          4. chain d [97286] picpiclink
        17. 2nue picpicxrefxref
          automatically matched to d1rc7a1
          1. region a:2-150 [148444] picpiclink
        18. 2nue picpicxrefxref
          automatically matched to d1rc7a1
          1. region b:2-150 [148446] picpiclink
        19. 1yyw picpicxrefxrefxrefxref
          automatically matched to d1rc7a1
          1. region a:2-150 [124256] picpiclink
        20. 1yyw picpicxrefxrefxrefxref
          automatically matched to d1rc7a1
          1. region b:2-150 [124258] picpiclink
        21. 1yyw picpicxrefxrefxrefxref
          automatically matched to d1rc7a1
          1. region c:2-150 [124260] picpiclink
        22. 1yyw picpicxrefxrefxrefxref
          automatically matched to d1rc7a1
          1. region d:2-150 [124262] picpiclink
    2. Hypothetical protein BC0111 [109892]
      1. Bacillus cereus [TaxId: 1396] [109893] (1)
        SQ Q81J58
        1. 1u61 picpic
          Structural genomics target
          1. chain a [107696] picpiclink
  2. PF0609-like [140675] (1)
    specific to Thermococci; shares conserved carboxylic residues and similar dimerisation mode with the RNase III domain; contains integrated in the fold extra C-terminal helix, making it similar to the core fold of Ribosomal protein S7 (scop_cf 47972)
    1. Hypothetical protein PF0609 [140676]
      SECSG target pfu-631545-001
      1. Pyrococcus furiosus [TaxId: 2261] [140677] (2)
        SQ Q8U363 2-125
        1. 1ztd picpic
          1. region a:2-125 [125639] picpiclink
        2. 1ztd picpic
          automatically matched to 1ZTD A:2-125
          1. region b:2-125 [125640] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk