Structural Classification of Proteins
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Family: DNA polymerase III clamp loader subunits, C-terminal domain

contains an extra helix

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: post-AAA+ oligomerization domain-like [48018]
    core: 5 helices: bundle
  4. Superfamily: post-AAA+ oligomerization domain-like [48019]
    associated with N-terminal domain from the AAA+ family of P-loop hydrolases
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase III clamp loader subunits, C-terminal domain [48020]
    contains an extra helix

Protein Domains:

  1. gamma subunit [63578]
    1. Escherichia coli [TaxId: 562] [63579] (3)
      SQ P06710 5-368
      1. 1jr3 picpicxrefxrefxrefxrefxref
        complexed with so4, zn
        1. region a:243-368 [63245] picpiclink
        2. region b:243-368 [63247] picpiclink
        3. region c:243-368 [63249] picpiclink
      2. 1xxh picpicxrefxrefxrefxrefxref
        complexed with atg, po4, zn
        1. region b:243-368 [116165] picpiclink
        2. region c:243-368 [116167] picpiclink
        3. region d:243-368 [116169] picpiclink
        4. region g:243-368 [116175] picpiclink
        5. region h:243-368 [116177] picpiclink
        6. region i:243-368 [116179] picpiclink
      3. 1xxi picpicxrefxrefxrefxrefxref
        complexed with adp, po4, zn
        1. region b:243-368 [116185] picpiclink
        2. region c:243-368 [116187] picpiclink
        3. region d:243-368 [116189] picpiclink
        4. region g:243-368 [116195] picpiclink
        5. region h:243-368 [116197] picpiclink
        6. region i:243-368 [116199] picpiclink
    2. Thermotoga maritima [TaxId: 2336] [140678] (1)
      SQ Q9WZM9 209-306
      1. 2gno picpicxref
        complexed with etx, na, unl
        1. region a:209-306 [135414] picpiclink
  2. delta prime subunit [48021]
    1. Escherichia coli [TaxId: 562] [48022] (4)
      SQ P28631
      1. 1a5t picpicxref
        complexed with zn
        1. region a:208-330 [18450] picpiclink
      2. 1jr3 picpicxrefxrefxrefxrefxref
        complexed with so4, zn
        1. region e:208-334 [63253] picpiclink
      3. 1xxh picpicxrefxrefxrefxrefxref
        complexed with atg, po4, zn
        1. region e:208-334 [116171] picpiclink
        2. region j:208-334 [116181] picpiclink
      4. 1xxi picpicxrefxrefxrefxrefxref
        complexed with adp, po4, zn
        1. region e:208-334 [116191] picpiclink
        2. region j:208-334 [116201] picpiclink
  3. delta subunit [63580]
    1. Escherichia coli [TaxId: 562] [63581] (4)
      SQ P28630
      1. 1jr3 picpicxrefxrefxrefxrefxref
        complexed with so4, zn
        1. region d:212-338 [63251] picpiclink
      2. 1jqj picpicxrefxref
        mutant
        1. region c:212-333 [67097] picpiclink
        2. region d:213-333 [67099] picpiclink
      3. 1xxh picpicxrefxrefxrefxrefxref
        complexed with atg, po4, zn
        1. region a:212-338 [116163] picpiclink
        2. region f:212-338 [116173] picpiclink
      4. 1xxi picpicxrefxrefxrefxrefxref
        complexed with adp, po4, zn
        1. region a:212-338 [116183] picpiclink
        2. region f:212-338 [116193] picpiclink
  4. Replication factor C [63582]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [63583] (1)
      1. 1iqp picpicxref
        complexed with adp
        1. region a:233-327 [62649] picpiclink
        2. region b:233-327 [62651] picpiclink
        3. region c:233-327 [62653] picpiclink
        4. region d:233-327 [62655] picpiclink
        5. region e:233-327 [62657] picpiclink
        6. region f:233-327 [62659] picpiclink
  5. Replication factor C1 [109894]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109895] (1)
      SQ P38630 295-696 # helical segment (667-696) together with unassigned C-terminal sequence forms an all-alpha subdomain
      1. 1sxj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with adp, atg, mg; mutant
        1. region a:548-693 [106081] picpiclink
  6. Replication factor C4 [109896]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109897] (1)
      SQ P40339
      1. 1sxj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with adp, atg, mg; mutant
        1. region b:231-322 [106083] picpiclink
  7. Replication factor C3 [109898]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109899] (1)
      SQ P38629
      1. 1sxj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with adp, atg, mg; mutant
        1. region c:239-333 [106085] picpiclink
  8. Replication factor C2 [109900]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109901] (1)
      SQ P40348
      1. 1sxj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with adp, atg, mg; mutant
        1. region d:263-353 [106087] picpiclink
  9. Replication factor C5 [109902]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109903] (1)
      SQ P38251
      1. 1sxj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with adp, atg, mg; mutant
        1. region e:256-354 [106089] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk