Structural Classification of Proteins
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Superfamily: DEATH domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DEATH domain [47985]
    6 helices: closed bundle; greek-key; internal pseudo twofold symmetry
  4. Superfamily: DEATH domain [47986]
    link to SUPERFAMILY database - Superfamily

Families:

  1. DEATH domain, DD [81312] (9)
    Pfam 00531
    1. p75 low affinity neurotrophin receptor [47988]
      residues 334-418
      1. Rat (Rattus norvegicus) [TaxId: 10116] [47989] (1)
        1. 1ngr picpic
          1. chain a [18422] picpiclink
    2. Fas [47990]
      1. Human (Homo sapiens) [TaxId: 9606] [47991] (1)
        1. 1ddf picpic
          1. chain a [18423] picpiclink
    3. FADD (Mort1) [47992]
      contains two domains of this superfamily: DED and DD, in this order
      1. Human (Homo sapiens) [TaxId: 9606] [47993] (3)
        1. 2gf5 picpicxref
          automatically matched to d1e3ya_
          mutant
          1. region a:89-191 [135075] picpiclink
        2. 1e41 picpic
          mutant
          1. chain a [18424] picpiclink
        3. 1e3y picpic
          mutant
          1. chain a [18426] picpiclink
      2. Mouse (Mus musculus) [TaxId: 10090] [47994] (1)
        1. 1fad picpic
          mutant
          1. chain a [18428] picpiclink
    4. Pelle death domain [48003]
      1. Drosophila melanogaster [TaxId: 7227] [48004] (3)
        1. 1d2z picpicxref
          complexed with Tube death domain
          1. chain a [18437] picpiclink
          2. chain c [18438] picpiclink
        2. 1ik7 picpic
          complexed with mpd, trs
          1. chain a [71241] picpiclink
          2. chain b [71242] picpiclink
        3. 1ygo picpic
          automatically matched to d1d2zc_
          1. region a:1-108 [123146] picpiclink
    5. Tube death domain [48005]
      complexed with Pelle death domain
      1. Drosophila melanogaster [TaxId: 7227] [48006] (1)
        1. 1d2z picpicxref
          1. chain b [18439] picpiclink
          2. chain d [18440] picpiclink
    6. Tumor necrosis factor receptor-1 death domain [74741]
      1. Human (Homo sapiens) [TaxId: 9606] [74742] (1)
        1. 1ich picpic
          mutant
          1. chain a [71182] picpiclink
    7. Interleukin-1 receptor-associated kinase 4, IRAK4 [116951]
      1. Mouse (Mus musculus) [TaxId: 10090] [116952] (1)
        SQ Q8R4K2 1-114
        1. 1wh4 picpic
          Structural genomics target
          1. chain a [114632] picpiclink
    8. Netrin receptor UNC5B [116953]
      1. Mouse (Mus musculus) [TaxId: 10090] [116954] (1)
        SQ Q8K1S3 854-943
        1. 1wmg picpic
          complexed with so3, so4
          1. chain a [114738] picpiclink
          2. chain b [114739] picpiclink
          3. chain c [114740] picpiclink
          4. chain d [114741] picpiclink
          5. chain e [114742] picpiclink
          6. chain f [114743] picpiclink
  2. DEATH effector domain, DED [81388] (2)
    1. FADD (Mort1) [81387]
      contains two domains of this superfamily: DED and DD, in this order
      1. Human (Homo sapiens) [TaxId: 9606] [81386] (3)
        1. 2gf5 picpicxref
          automatically matched to d1a1w__
          mutant
          1. region a:2-83 [135076] picpiclink
        2. 1a1w picpic
          mutant
          1. chain a [18425] picpiclink
        3. 1a1z picpic
          mutant
          1. chain a [18427] picpiclink
    2. PEA-15 (phosphoprotein enriched in astrocytes 15 kDa) [81818]
      DED is followed by an irregular C-terminal tail
      1. Chinese hamster (Cricetulus griseus) [TaxId: 10029] [81819] (1)
        1. 1n3k picpic
          1. chain a [79965] picpiclink
  3. Caspase recruitment domain, CARD [81313] (5)
    1. Raidd CARD domain [47995]
      1. Human (Homo sapiens) [TaxId: 9606] [47996] (1)
        1. 3crd picpic
          1. chain a [18429] picpiclink
    2. Apoptotic protease activating factor 1, APAF-1 [47997]
      1. Human (Homo sapiens) [TaxId: 9606] [47998] (6)
        1. 1cy5 picpic
          complexed with bme, zn
          1. chain a [18430] picpiclink
        2. 2ygs picpic
          1. chain a [18431] picpiclink
        3. 2p1h picpic
          automatically matched to d1cwwa_
          complexed with zn
          1. region a:1-94 [139457] picpiclink
        4. 3ygs picpicxref
          1. chain c [18432] picpiclink
        5. 1c15 picpic
          1. chain a [18433] picpiclink
        6. 1cww picpic
          1. chain a [18434] picpiclink
    3. Procaspase 9 prodomain [47999]
      1. Human (Homo sapiens) [TaxId: 9606] [48000] (1)
        1. 3ygs picpicxref
          1. chain p [18435] picpiclink
    4. Iceberg [48001]
      an inhibitor of interleukin-1beta generation
      1. Human (Homo sapiens) [TaxId: 9606] [48002] (1)
        1. 1dgn picpic
          1. chain a [18436] picpiclink
    5. Cell death protein 4, CED-4 [158663]
      1. Caenorhabditis elegans [TaxId: 6239] [158664] (1)
        SQ P30429 1-108
        1. 2a5y picpicxrefxrefxref
          complexed with atp, mg; mutant
          1. region b:1-108 [144787] picpiclink
  4. Pyrin domain, PYD [101298] (2)
    1. Apoptosis-associated speck-like protein Asc [101299]
      1. Human (Homo sapiens) [TaxId: 9606] [101300] (1)
        1. 1ucp picpic
          1. chain a [99186] picpiclink
    2. NALP1 [101301]
      1. Human (Homo sapiens) [TaxId: 9606] [101302] (1)
        1. 1pn5 picpic
          1. region a:59-151 [94948] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk