Structural Classification of Proteins
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Family: HD domain

Pfam 01966; metal dependent phosphohydrolases

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: HD-domain/PDEase-like [109603]
    multihelical; consists of two different alpha-helical bundles
  4. Superfamily: HD-domain/PDEase-like [109604]
    link to SUPERFAMILY database - Superfamily
  5. Family: HD domain [101340]
    Pfam 01966; metal dependent phosphohydrolases

Protein Domains:

  1. Stringent response-like protein RelA N-terminal domain [101341]
    1. Streptococcus equisimilis [TaxId: 119602] [101342] (1)
      1. 1vj7 picpicxref
        complexed with gdp, gpx, mn
        1. region a:5-196 [100801] picpiclink
        2. region b:5-196 [100803] picpiclink
  2. 5'-nucleotidase YfbR [116969]
    1. Escherichia coli [TaxId: 562] [116970] (2)
      SQ P76491
      Structural genomics target
      1. 2paq picpic
        automatically matched to d1wpha_
        1. region a:2-187 [139643] picpiclink
      2. 2paq picpic
        automatically matched to d1wpha_
        1. region b:2-187 [139644] picpiclink
  3. Oxetanocin-like protein PF0395 [116971]
    similar fold and oligomeric structure to 5'-nucleotidase YfbR
    1. Pyrococcus furiosus [TaxId: 2261] [116972] (1)
      SQ Q8U3R1
      1. 1xx7 picpic
        Structural genomics target
        complexed with ni, unx
        1. chain a [116143] picpiclink
        2. chain b [116144] picpiclink
        3. chain c [116145] picpiclink
        4. chain d [116146] picpiclink
        5. chain e [116147] picpiclink
        6. chain f [116148] picpiclink
  4. Hypothetical protein AF1432 [140763]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [140764] (4)
      SQ O28840 7-172! SQ O28840 7-173
      1. 1ynb picpic
        1. region a:7-173 [123718] picpiclink
      2. 1ynb picpic
        automatically matched to 1YNB A:7-173
        1. region b:7-173 [123719] picpiclink
      3. 1ynb picpic
        automatically matched to 1YNB A:7-173
        1. region c:7-173 [123720] picpiclink
      4. 1yoy picpic
        1. region a:7-172 [123795] picpiclink
  5. Hypothetical protein aq_1910 [140765]
    elaborated with additional structures in C-terminal extension
    1. Aquifex aeolicus [TaxId: 63363] [140766] (2)
      SQ O67745 1-369
      1. 2hek picpic
        complexed with br, cl, gdp, gol, po4, zn
        1. region a:1-369 [136354] picpiclink
      2. 2hek picpic
        automatically matched to 2HEK A:1-369
        complexed with br, cl, gdp, gol, po4, zn
        1. region b:1-369 [136355] picpiclink
  6. Hypothetical protein EF1143 [140767]
    Probable ortholog of aq_1910
    1. Enterococcus faecalis [TaxId: 1351] [140768] (2)
      SQ Q836G9 1-453
      1. 2o6i picpic
        complexed with cl, hed, zn
        1. region a:1-453 [138920] picpiclink
      2. 2o6i picpic
        automatically matched to 2O6I A:1-453
        complexed with cl, hed, zn
        1. region b:1-453 [138921] picpiclink
  7. Predicted hydrolase mes0020 [158719]
    1. Uncultured thermotogales bacterium [TaxId: 221214] [158720] (1)
      SQ Q1EM40 1-217
      1. 2pq7 picpic
        complexed with cl, fe, mpd, po4
        1. region a:1-217 [149786] picpiclink
  8. Uncharacterized protein Lin1889 [158721]
    1. Listeria innocua [TaxId: 1642] [158722] (1)
      SQ Q92AN1 1-201
      1. 3b57 picpic
        complexed with mg
        1. region a:1-201 [154835] picpiclink
  9. Uncharacterized protein SE1688 [158723]
    1. Staphylococcus epidermidis [TaxId: 1282] [158724] (2)
      SQ Q8CRP0 1-216
      1. 2qgs picpic
        complexed with zn
        1. region a:1-216 [150782] picpiclink
      2. 2qgs picpic
        automatically matched to 2QGS A:1-216
        complexed with zn
        1. region b:1-216 [150783] picpiclink
  10. Hypothetical protein Atu1052 [158725]
    1. Agrobacterium tumefaciens [TaxId: 358] [158726] (4)
      SQ Q8UGI5 6-205
      1. 2gz4 picpic
        1. region a:6-205 [147196] picpiclink
      2. 2gz4 picpic
        automatically matched to 2GZ4 A:6-205
        1. region b:6-203 [147197] picpiclink
      3. 2gz4 picpic
        automatically matched to 2GZ4 A:6-205
        1. region c:6-201 [147198] picpiclink
      4. 2gz4 picpic
        automatically matched to 2GZ4 A:6-205
        1. region d:8-204 [147199] picpiclink
  11. Uncharacterized protein BH2835 [158727]
    1. Bacillus halodurans [TaxId: 86665] [158728] (4)
      SQ Q9K916 2-213
      1. 3dto picpic
        1. region a:2-213 [157850] picpiclink
      2. 3dto picpic
        automatically matched to 3DTO A:2-213
        1. region b:2-213 [157851] picpiclink
      3. 3dto picpic
        automatically matched to 3DTO A:2-213
        1. region c:2-213 [157852] picpiclink
      4. 3dto picpic
        automatically matched to 3DTO A:2-213
        1. region d:2-213 [157853] picpiclink
  12. Uncharacterized protein LP2664 [158729]
    1. Lactobacillus plantarum [TaxId: 1590] [158730] (4)
      SQ Q88U62 1-215
      1. 2pjq picpic
        1. region a:1-215 [149569] picpiclink
      2. 2pjq picpic
        automatically matched to 2PJQ A:1-215
        1. region b:1-215 [149570] picpiclink
      3. 2pjq picpic
        automatically matched to 2PJQ A:1-215
        1. region c:1-215 [149571] picpiclink
      4. 2pjq picpic
        automatically matched to 2PJQ A:1-215
        1. region d:1-215 [149572] picpiclink
  13. Uncharacterized protein BT9727_1981 [158731]
    1. Bacillus thuringiensis [TaxId: 1428] [158732] (2)
      SQ Q6HJG6 2-214
      1. 3djb picpic
        complexed with mg; mutant
        1. region a:2-214 [157756] picpiclink
      2. 3djb picpic
        automatically matched to 3DJB A:2-214
        complexed with mg; mutant
        1. region b:2-214 [157757] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk