Structural Classification of Proteins
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Fold: DNA-glycosylase

multihelical; consists of two all-alpha domains

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA-glycosylase [48149]
    multihelical; consists of two all-alpha domains

Superfamilies:

  1. DNA-glycosylase [48150] (6)
    link to SUPERFAMILY database - Superfamily
    1. Endonuclease III [48151] (1)
      1. Endonuclease III [48152]
        1. Escherichia coli [TaxId: 562] [48153] (4)
          1. 1orn picpic
            complexed with fs4, na, ped, trs
            1. chain a [87342] picpiclink
          2. 2abk picpic
            complexed with fs4
            1. chain a [18743] picpiclink
          3. 1orp picpic
            complexed with fs4, na, ped
            1. chain a [87343] picpiclink
          4. 1p59 picpic
            complexed with 3dr, 5iu, fs4, na
            1. chain a [87794] picpiclink
    2. Mismatch glycosylase [48154] (4)
      1. Catalytic domain of MutY [48155]
        1. Escherichia coli [TaxId: 562] [48156] (13)
          SQ P17802 1-225
          1. 1kg2 picpic
            complexed with fs4, gol, so4
            1. chain a [77378] picpiclink
          2. 1mun picpic
            complexed with fs4, gol, imd; mutant
            1. chain a [18744] picpiclink
          3. 1kg5 picpic
            complexed with fs4, gol, so4; mutant
            1. chain a [77381] picpiclink
          4. 1muy picpic
            complexed with fs4, glc, imd
            1. chain a [18745] picpiclink
          5. 1kg6 picpic
            complexed with fs4, gol, so4; mutant
            1. chain a [77382] picpiclink
          6. 1kg7 picpic
            complexed with fs4, gol, so4; mutant
            1. chain a [77383] picpiclink
          7. 1kg4 picpic
            complexed with fs4, gol, so4; mutant
            1. chain a [77380] picpiclink
          8. 1wei picpic
            complexed with ade, edo, fs4; mutant
            1. chain a [109339] picpiclink
          9. 1kg3 picpic
            complexed with fs4, gol, so4
            1. chain a [77379] picpiclink
          10. 1kqj picpic
            complexed with cry, fs4, so4; mutant
            1. chain a [72879] picpiclink
          11. 1mud picpic
            complexed with ade, fs4, gol; mutant
            1. chain a [18746] picpiclink
          12. 1wef picpic
            complexed with fs4; mutant
            1. chain a [109337] picpiclink
          13. 1weg picpic
            complexed with edo, fs4, imd; mutant
            1. chain a [109338] picpiclink
        2. Bacillus stearothermophilus [TaxId: 1422] [101348] (3)
          1. 1rrq picpicxref
            complexed with 8og, ca, fs4; mutant
            1. region a:9-229 [97798] picpiclink
          2. 1rrs picpicxref
            complexed with 8og, ca, fs4, hpd; mutant
            1. region a:9-230 [97800] picpiclink
          3. 1vrl picpicxref
            automatically matched to d1rrsa1
            complexed with 8og, ade, ca, hpd, sf4; mutant
            1. region a:9-230 [120470] picpiclink
      2. Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 [89099]
        1. Mouse (Mus musculus) [TaxId: 10090] [89100] (1)
          1. 1ngn picpic
            1. chain a [85697] picpiclink
      3. Thymine-DNA glycosylase [69081]
        1. Archaeon Methanobacterium thermoformicicum [TaxId: 145262] [69082] (1)
          1. 1kea picpic
            complexed with act, cl, fs4, zn
            1. chain a [68491] picpiclink
    3. 3-Methyladenine DNA glycosylase I (Tag) [74756] (1)
      1. 3-Methyladenine DNA glycosylase I (Tag) [74757]
        1. Escherichia coli [TaxId: 562] [74758] (3)
          1. 1nku picpic
            complexed with zn
            1. chain a [85838] picpiclink
          2. 1lmz picpic
            1. chain a [74037] picpiclink
          3. 1p7m picpic
            complexed with adk, zn
            1. chain a [94307] picpiclink
    4. 3-Methyladenine DNA glycosylase III (MagIII) [101349] (1)
      1. 3-Methyladenine DNA glycosylase III (MagIII) [101350]
        1. Helicobacter pylori [TaxId: 210] [101351] (3)
          1. 1pu6 picpic
            complexed with cl, mpd, seo
            1. chain a [95123] picpiclink
            2. chain b [95124] picpiclink
          2. 1pu7 picpic
            complexed with 39a, seo
            1. chain a [95125] picpiclink
            2. chain b [95126] picpiclink
          3. 1pu8 picpic
            complexed with ea1, seo
            1. chain a [95127] picpiclink
            2. chain b [95128] picpiclink
    5. DNA repair glycosylase, 2 C-terminal domains [48157] (2)
      1. 3-Methyladenine DNA glycosylase II (gene alkA or aidA) [48158]
        1. Escherichia coli [TaxId: 562] [48159] (35)
          SQ P04395
          1. 1mpg picpicxref
            complexed with gol
            1. region a:100-282 [18747] picpiclink
            2. region b:100-282 [18748] picpiclink
          2. 3cw7 picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region a:100-282 [157027] picpiclink
          3. 3cw7 picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region b:100-282 [157029] picpiclink
          4. 3cw7 picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region c:100-282 [157031] picpiclink
          5. 3cw7 picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region d:100-282 [157033] picpiclink
          6. 3cws picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region a:100-282 [157052] picpiclink
          7. 3cws picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region b:100-282 [157054] picpiclink
          8. 3cws picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region c:100-281 [157056] picpiclink
          9. 3cws picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region d:100-281 [157058] picpiclink
          10. 3cwa picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region a:100-282 [157037] picpiclink
          11. 3cwa picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region b:100-282 [157039] picpiclink
          12. 3cwa picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region c:100-282 [157041] picpiclink
          13. 3cwa picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region d:100-282 [157043] picpiclink
          14. 1pvs picpicxref
            complexed with 7hp
            1. region a:100-282 [104329] picpiclink
            2. region b:100-282 [104331] picpiclink
          15. 3cvs picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region a:100-282 [157011] picpiclink
          16. 3cvs picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region b:100-282 [157013] picpiclink
          17. 3cvs picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region c:100-282 [157015] picpiclink
          18. 3cvs picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region d:100-282 [157017] picpiclink
          19. 3cwt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region a:100-282 [157060] picpiclink
          20. 3cwt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region b:100-281 [157062] picpiclink
          21. 3cwt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region c:100-282 [157064] picpiclink
          22. 3cwt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fi
            1. region d:100-281 [157066] picpiclink
          23. 3cvt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region a:100-282 [157019] picpiclink
          24. 3cvt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region b:100-282 [157021] picpiclink
          25. 3cvt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region c:100-282 [157023] picpiclink
          26. 3cvt picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 8og
            1. region d:100-282 [157025] picpiclink
          27. 1diz picpicxref
            protein/DNA complex; complexed with na, nri
            1. region a:100-282 [18749] picpiclink
            2. region b:100-282 [18750] picpiclink
          28. 3cwu picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fe
            1. region a:100-282 [157068] picpiclink
          29. 3cwu picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fe
            1. region b:100-282 [157070] picpiclink
          30. 3cwu picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fe
            1. region c:100-282 [157072] picpiclink
          31. 3cwu picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with 2fe
            1. region d:100-282 [157074] picpiclink
          32. 3d4v picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with fmg
            1. region a:100-282 [157302] picpiclink
          33. 3d4v picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with fmg
            1. region b:100-282 [157304] picpiclink
          34. 3d4v picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with fmg
            1. region c:100-281 [157306] picpiclink
          35. 3d4v picpicxrefxrefxrefxref
            automatically matched to d1diza1
            complexed with fmg
            1. region d:100-281 [157308] picpiclink
      2. 8-oxoguanine glycosylase [48160]
        1. Human (Homo sapiens) [TaxId: 9606] [48161] (23)
          1. 2noh picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-325 [138409] picpiclink
          2. 1m3q picpicxref
            complexed with ang, ca, drz; mutant
            1. region a:136-325 [91184] picpiclink
          3. 1ko9 picpicxref
            complexed with so4
            1. region a:136-323 [68717] picpiclink
          4. 1lwy picpicxref
            borohydride trapped intermediate
            complexed with ped
            1. region a:136-325 [78285] picpiclink
          5. 2nob picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-325 [138403] picpiclink
          6. 1m3h picpicxref
            complexed with ca, ddx; mutant
            1. region a:136-325 [91176] picpiclink
          7. 1ebm picpicxref
            complexed with ca, oxo; mutant
            1. region a:136-325 [18751] picpiclink
          8. 1lww picpicxref
            borohydride trapped intermediate
            complexed with brg, ca, ped
            1. region a:136-325 [78283] picpiclink
          9. 2noe picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-325 [138405] picpiclink
          10. 1n39 picpicxref
            complexed with 3dr, ca; mutant
            1. region a:136-325 [85289] picpiclink
          11. 1hu0 picpicxref
            borohydride trapped intermediate complex
            complexed with ca, oxg, ped
            1. region a:136-325 [76723] picpiclink
          12. 1n3a picpicxref
            complexed with 3dr, ca; mutant
            1. region a:136-325 [85291] picpiclink
          13. 1lwv picpicxref
            borohydride trapped intermediate
            complexed with ang, ca, ped
            1. region a:136-325 [78281] picpiclink
          14. 2nof picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-323 [138407] picpiclink
          15. 1yqr picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-325 [123897] picpiclink
          16. 2nol picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-325 [138411] picpiclink
          17. 1yqm picpicxref
            automatically matched to d1ebma1
            complexed with 7gu, ca; mutant
            1. region a:136-325 [123893] picpiclink
          18. 1yql picpicxref
            automatically matched to d1ebma1
            complexed with ca, ppw; mutant
            1. region a:136-325 [123891] picpiclink
          19. 2noz picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca; mutant
            1. region a:136-323 [138414] picpiclink
          20. 1yqk picpicxref
            automatically matched to d1ebma1
            complexed with ca, gol; mutant
            1. region a:136-323 [123889] picpiclink
          21. 1fn7 picpicxref
            complexed with 3dr, ca
            1. region a:136-325 [59892] picpiclink
          22. 2i5w picpicxref
            automatically matched to d1ebma1
            complexed with 8og, ca, gol; mutant
            1. region a:136-323 [137069] picpiclink
          23. 1n3c picpicxref
            complexed with 8og, ca; mutant
            1. region a:136-325 [85293] picpiclink
    6. AgoG-like [116976] (2)
      1. 8-oxoguanine DNA glycosylase, AgoG [116977]
        1. Pyrobaculum aerophilum [TaxId: 13773] [116978] (2)
          SQ Q8ZVK6 # PAE2237
          1. 1xqo picpic
            1. chain a [115853] picpiclink
          2. 1xqp picpic
            complexed with 8hg
            1. chain a [115854] picpiclink
      2. Hypothetical protein PF0904 [116979]
        1. Pyrococcus furiosus [TaxId: 2261] [116980] (1)
          SQ Q8U2D5
          1. 1xg7 picpic
            Structural genomics target
            1. chain a [115281] picpiclink
            2. chain b [115282] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk