Structural Classification of Proteins
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Superfamily: DNA-glycosylase

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA-glycosylase [48149]
    multihelical; consists of two all-alpha domains
  4. Superfamily: DNA-glycosylase [48150]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Endonuclease III [48151] (1)
    1. Endonuclease III [48152]
      1. Escherichia coli [TaxId: 562] [48153] (4)
        1. 1orn picpic
          complexed with fs4, na, ped, trs
          1. chain a [87342] picpiclink
        2. 2abk picpic
          complexed with fs4
          1. chain a [18743] picpiclink
        3. 1orp picpic
          complexed with fs4, na, ped
          1. chain a [87343] picpiclink
        4. 1p59 picpic
          complexed with 3dr, 5iu, fs4, na
          1. chain a [87794] picpiclink
  2. Mismatch glycosylase [48154] (4)
    1. Catalytic domain of MutY [48155]
      1. Escherichia coli [TaxId: 562] [48156] (13)
        SQ P17802 1-225
        1. 1kg2 picpic
          complexed with fs4, gol, so4
          1. chain a [77378] picpiclink
        2. 1mun picpic
          complexed with fs4, gol, imd; mutant
          1. chain a [18744] picpiclink
        3. 1kg5 picpic
          complexed with fs4, gol, so4; mutant
          1. chain a [77381] picpiclink
        4. 1muy picpic
          complexed with fs4, glc, imd
          1. chain a [18745] picpiclink
        5. 1kg6 picpic
          complexed with fs4, gol, so4; mutant
          1. chain a [77382] picpiclink
        6. 1kg7 picpic
          complexed with fs4, gol, so4; mutant
          1. chain a [77383] picpiclink
        7. 1kg4 picpic
          complexed with fs4, gol, so4; mutant
          1. chain a [77380] picpiclink
        8. 1wei picpic
          complexed with ade, edo, fs4; mutant
          1. chain a [109339] picpiclink
        9. 1kg3 picpic
          complexed with fs4, gol, so4
          1. chain a [77379] picpiclink
        10. 1kqj picpic
          complexed with cry, fs4, so4; mutant
          1. chain a [72879] picpiclink
        11. 1mud picpic
          complexed with ade, fs4, gol; mutant
          1. chain a [18746] picpiclink
        12. 1wef picpic
          complexed with fs4; mutant
          1. chain a [109337] picpiclink
        13. 1weg picpic
          complexed with edo, fs4, imd; mutant
          1. chain a [109338] picpiclink
      2. Bacillus stearothermophilus [TaxId: 1422] [101348] (3)
        1. 1rrq picpicxref
          complexed with 8og, ca, fs4; mutant
          1. region a:9-229 [97798] picpiclink
        2. 1rrs picpicxref
          complexed with 8og, ca, fs4, hpd; mutant
          1. region a:9-230 [97800] picpiclink
        3. 1vrl picpicxref
          automatically matched to d1rrsa1
          complexed with 8og, ade, ca, hpd, sf4; mutant
          1. region a:9-230 [120470] picpiclink
    2. Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 [89099]
      1. Mouse (Mus musculus) [TaxId: 10090] [89100] (1)
        1. 1ngn picpic
          1. chain a [85697] picpiclink
    3. Thymine-DNA glycosylase [69081]
      1. Archaeon Methanobacterium thermoformicicum [TaxId: 145262] [69082] (1)
        1. 1kea picpic
          complexed with act, cl, fs4, zn
          1. chain a [68491] picpiclink
  3. 3-Methyladenine DNA glycosylase I (Tag) [74756] (1)
    1. 3-Methyladenine DNA glycosylase I (Tag) [74757]
      1. Escherichia coli [TaxId: 562] [74758] (3)
        1. 1nku picpic
          complexed with zn
          1. chain a [85838] picpiclink
        2. 1lmz picpic
          1. chain a [74037] picpiclink
        3. 1p7m picpic
          complexed with adk, zn
          1. chain a [94307] picpiclink
  4. 3-Methyladenine DNA glycosylase III (MagIII) [101349] (1)
    1. 3-Methyladenine DNA glycosylase III (MagIII) [101350]
      1. Helicobacter pylori [TaxId: 210] [101351] (3)
        1. 1pu6 picpic
          complexed with cl, mpd, seo
          1. chain a [95123] picpiclink
          2. chain b [95124] picpiclink
        2. 1pu7 picpic
          complexed with 39a, seo
          1. chain a [95125] picpiclink
          2. chain b [95126] picpiclink
        3. 1pu8 picpic
          complexed with ea1, seo
          1. chain a [95127] picpiclink
          2. chain b [95128] picpiclink
  5. DNA repair glycosylase, 2 C-terminal domains [48157] (2)
    1. 3-Methyladenine DNA glycosylase II (gene alkA or aidA) [48158]
      1. Escherichia coli [TaxId: 562] [48159] (35)
        SQ P04395
        1. 1mpg picpicxref
          complexed with gol
          1. region a:100-282 [18747] picpiclink
          2. region b:100-282 [18748] picpiclink
        2. 3cw7 picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region a:100-282 [157027] picpiclink
        3. 3cw7 picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region b:100-282 [157029] picpiclink
        4. 3cw7 picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region c:100-282 [157031] picpiclink
        5. 3cw7 picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region d:100-282 [157033] picpiclink
        6. 3cws picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region a:100-282 [157052] picpiclink
        7. 3cws picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region b:100-282 [157054] picpiclink
        8. 3cws picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region c:100-281 [157056] picpiclink
        9. 3cws picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region d:100-281 [157058] picpiclink
        10. 3cwa picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region a:100-282 [157037] picpiclink
        11. 3cwa picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region b:100-282 [157039] picpiclink
        12. 3cwa picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region c:100-282 [157041] picpiclink
        13. 3cwa picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region d:100-282 [157043] picpiclink
        14. 1pvs picpicxref
          complexed with 7hp
          1. region a:100-282 [104329] picpiclink
          2. region b:100-282 [104331] picpiclink
        15. 3cvs picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region a:100-282 [157011] picpiclink
        16. 3cvs picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region b:100-282 [157013] picpiclink
        17. 3cvs picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region c:100-282 [157015] picpiclink
        18. 3cvs picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region d:100-282 [157017] picpiclink
        19. 3cwt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region a:100-282 [157060] picpiclink
        20. 3cwt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region b:100-281 [157062] picpiclink
        21. 3cwt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region c:100-282 [157064] picpiclink
        22. 3cwt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fi
          1. region d:100-281 [157066] picpiclink
        23. 3cvt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region a:100-282 [157019] picpiclink
        24. 3cvt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region b:100-282 [157021] picpiclink
        25. 3cvt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region c:100-282 [157023] picpiclink
        26. 3cvt picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 8og
          1. region d:100-282 [157025] picpiclink
        27. 1diz picpicxref
          protein/DNA complex; complexed with na, nri
          1. region a:100-282 [18749] picpiclink
          2. region b:100-282 [18750] picpiclink
        28. 3cwu picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fe
          1. region a:100-282 [157068] picpiclink
        29. 3cwu picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fe
          1. region b:100-282 [157070] picpiclink
        30. 3cwu picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fe
          1. region c:100-282 [157072] picpiclink
        31. 3cwu picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with 2fe
          1. region d:100-282 [157074] picpiclink
        32. 3d4v picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with fmg
          1. region a:100-282 [157302] picpiclink
        33. 3d4v picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with fmg
          1. region b:100-282 [157304] picpiclink
        34. 3d4v picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with fmg
          1. region c:100-281 [157306] picpiclink
        35. 3d4v picpicxrefxrefxrefxref
          automatically matched to d1diza1
          complexed with fmg
          1. region d:100-281 [157308] picpiclink
    2. 8-oxoguanine glycosylase [48160]
      1. Human (Homo sapiens) [TaxId: 9606] [48161] (23)
        1. 2noh picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-325 [138409] picpiclink
        2. 1m3q picpicxref
          complexed with ang, ca, drz; mutant
          1. region a:136-325 [91184] picpiclink
        3. 1ko9 picpicxref
          complexed with so4
          1. region a:136-323 [68717] picpiclink
        4. 1lwy picpicxref
          borohydride trapped intermediate
          complexed with ped
          1. region a:136-325 [78285] picpiclink
        5. 2nob picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-325 [138403] picpiclink
        6. 1m3h picpicxref
          complexed with ca, ddx; mutant
          1. region a:136-325 [91176] picpiclink
        7. 1ebm picpicxref
          complexed with ca, oxo; mutant
          1. region a:136-325 [18751] picpiclink
        8. 1lww picpicxref
          borohydride trapped intermediate
          complexed with brg, ca, ped
          1. region a:136-325 [78283] picpiclink
        9. 2noe picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-325 [138405] picpiclink
        10. 1n39 picpicxref
          complexed with 3dr, ca; mutant
          1. region a:136-325 [85289] picpiclink
        11. 1hu0 picpicxref
          borohydride trapped intermediate complex
          complexed with ca, oxg, ped
          1. region a:136-325 [76723] picpiclink
        12. 1n3a picpicxref
          complexed with 3dr, ca; mutant
          1. region a:136-325 [85291] picpiclink
        13. 1lwv picpicxref
          borohydride trapped intermediate
          complexed with ang, ca, ped
          1. region a:136-325 [78281] picpiclink
        14. 2nof picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-323 [138407] picpiclink
        15. 1yqr picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-325 [123897] picpiclink
        16. 2nol picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-325 [138411] picpiclink
        17. 1yqm picpicxref
          automatically matched to d1ebma1
          complexed with 7gu, ca; mutant
          1. region a:136-325 [123893] picpiclink
        18. 1yql picpicxref
          automatically matched to d1ebma1
          complexed with ca, ppw; mutant
          1. region a:136-325 [123891] picpiclink
        19. 2noz picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca; mutant
          1. region a:136-323 [138414] picpiclink
        20. 1yqk picpicxref
          automatically matched to d1ebma1
          complexed with ca, gol; mutant
          1. region a:136-323 [123889] picpiclink
        21. 1fn7 picpicxref
          complexed with 3dr, ca
          1. region a:136-325 [59892] picpiclink
        22. 2i5w picpicxref
          automatically matched to d1ebma1
          complexed with 8og, ca, gol; mutant
          1. region a:136-323 [137069] picpiclink
        23. 1n3c picpicxref
          complexed with 8og, ca; mutant
          1. region a:136-325 [85293] picpiclink
  6. AgoG-like [116976] (2)
    1. 8-oxoguanine DNA glycosylase, AgoG [116977]
      1. Pyrobaculum aerophilum [TaxId: 13773] [116978] (2)
        SQ Q8ZVK6 # PAE2237
        1. 1xqo picpic
          1. chain a [115853] picpiclink
        2. 1xqp picpic
          complexed with 8hg
          1. chain a [115854] picpiclink
    2. Hypothetical protein PF0904 [116979]
      1. Pyrococcus furiosus [TaxId: 2261] [116980] (1)
        SQ Q8U2D5
        1. 1xg7 picpic
          Structural genomics target
          1. chain a [115281] picpiclink
          2. chain b [115282] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk