Fold: alpha/alpha toroid

multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: alpha/alpha toroid [48207]
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

Superfamilies:

1. Six-hairpin glycosidases [48208] (9)
   uperfamily
   1. Glucoamylase [48209] (2)
      1. Glucoamylase [48210]
         1. Aspergillus awamori, variant x100 [TaxId: 105351] [48211] (6)
            1. 1gai
               complexed with gac, glc, man, nag
               1. chain a [18819]
            2. 1gah
               complexed with acr, glc, man, nag
               1. chain a [18820]
            3. 3gly
               complexed with man, nag
               1. chain a [18822]
            4. 1glm
               complexed with man, nag
               1. chain a [18821]
            5. 1dog
               complexed with as1, as2, glc, noj
               1. chain a [18823]
            6. 1agm
               complexed with acr, asf, man
               1. chain a [18824]
         2. Yeast (Saccharomycopsis fibuligera) [TaxId: 4944] [48212] (3)
            1. 2fba
               automatically matched to d1ayx__
               complexed with trs
               1. region a:1-492 [133239]
            2. 2f6d
               automatically matched to d1ayx__
               complexed with acr, na, po4
               1. region a:1-492 [133039]
            3. 1ayx
               complexed with trs
               1. chain a [18825]
   2. Cellulases catalytic domain [48213] (13)
      1. CelA cellulase [48214]
         1. Clostridium thermocellum [TaxId: 1515] [48215] (3)
            1. 1kwf
               complexed with glc; mutant
               1. chain a [73078]
            2. 1is9
               complexed with cl, hg
               1. chain a [76777]
            3. 1cem
               1. chain a [18826]
      2. Nonprocessive cellulase Cel9M [81846]
         contains only the catalytic module, which interacts with the substrate
         1. Clostridium cellulolyticum [TaxId: 1521] [81847] (2)
            1. 1ia6
               complexed with ca, ni, so4, zn
               1. chain a [76738]
            2. 1ia7
               complex with cellobiose
               complexed with ca, edo, glc, ni, so4, zn
               1. chain a [76739]
      3. Endo-1,4-beta-xylanase [89105]
         cold-adapted family 8 xylanase
         1. Pseudoalteromonas haloplanktis [TaxId: 228] [89106] (8)
            1. 1h12
               complexed with xyp, xys
               1. chain a [83447]
            2. 1h13
               1. chain a [83448]
            3. 1xwt
               mutant
               1. region a:1-404 [122410]
            4. 1h14
               mutant
               1. chain a [83449]
            5. 1xw2
               mutant
               1. region a:1-404 [122389]
            6. 1xwq
               automatically matched to 1XW2 A:1-404
               complexed with xyp; mutant
               1. region a:1-404 [122405]
            7. 2b4f
               automatically matched to 2A8Z A:1-404
               complexed with xyp, xys; mutant
               1. region a:1-404 [127828]
            8. 2a8z
               mutant
               1. region a:1-404 [126422]
      4. Endo/exocellulase:cellobiose E-4, N-terminal domain [48216]
         1. Thermomonospora fusca [TaxId: 2021] [48217] (4)
            1. 1tf4
               complexed with ca
               1. region a:1-460 [18827]
               2. region b:1-460 [18828]
            2. 1js4
               complexed with ca, glc
               1. region a:1-460 [18829]
               2. region b:1-460 [18830]
            3. 4tf4
               complexed with ca, glc
               1. region a:1-460 [18831]
               2. region b:1-460 [18832]
            4. 3tf4
               complexed with ca, glc
               1. region a:1-460 [18833]
               2. region b:1-460 [18834]
         2. Clostridium cellulolyticum, atcc 35319 [TaxId: 1521] [89107] (4)
            endoglucanase 9G
            1. 1g87
               complexed with ca, cry, edo, mg
               1. region a:3-456 [83275]
               2. region b:2-456 [83277]
            2. 1ga2
               complexed with acy, ca, cry, glc, mg
               1. region a:4-456 [83281]
               2. region b:2-456 [83283]
            3. 1k72
               complexed with ca, cbi, cry, glc, mg, sch
               1. region a:3-456 [84309]
               2. region b:2-456 [84311]
            4. 1kfg
               complexed with ca, cry, glc, gs1, gs4, mg, ni, trs
               1. region a:3-456 [84387]
               2. region b:2-456 [84389]
      5. Endo-b-1,4-glucanase [81848]
         1. Termite (Nasutitermes takasagoensis) [TaxId: 62960] [81849] (3)
            1. 1ks8
               complexed with so4
               1. chain a [77519]
            2. 1ksc
               complexed with ca
               1. chain a [77520]
            3. 1ksd
               complexed with ca
               1. chain a [77521]
      6. CelD cellulase, C-terminal domain [48218]
         the other, N-terminal, domain is immunoglobulin-like
         1. Clostridium thermocellum [TaxId: 1515] [48219] (1)
            1. 1clc
               complexed with ca, zn
               1. region a:135-575 [18835]
      7. Cellulose 1,4-beta-cellobiosidase CbhA [101363]
         1. Clostridium thermocellum [TaxId: 1515] [101364] (2)
            1. 1ut9
               1. region a:306-816 [99912]
            2. 1rq5
               complexed with ca, ctt; mutant
               1. region a:306-815 [97730]
      8. Processive endocellulase CelF (Cel48F) [48220]
         1. Clostridium cellulolyticum [TaxId: 1521] [48221] (9)
            1. 1g9g
               complexed with ca, mg
               1. chain a [83279]
            2. 2qno
               automatically matched to d1f9da_
               complexed with ca, glc, sgc; mutant
               1. region a:1-629 [150948]
            3. 1fce
               complexed with ca, glc, mgl
               1. chain a [18836]
            4. 1fae
               complexed with ca, glc
               1. chain a [18837]
            5. 1g9j
               complexed with ca, cl, glc, sgc; mutant
               1. chain a [83280]
            6. 1fbw
               complexed with ca, glc; mutant
               1. chain a [18838]
            7. 1f9d
               complexed with ca, glc; mutant
               1. chain a [18839]
            8. 1fbo
               complexed with ca, glc, glo
               1. chain a [18840]
            9. 1f9o
               complexed with ca, glc, pih, ssg
               1. chain a [18841]
         2. Clostridium thermocellum [TaxId: 1515] [74765] (2)
            1. 1l1y
               complexed with bgc
               1. chain a [73486]
               2. chain b [73487]
               3. chain c [73488]
               4. chain d [73489]
               5. chain e [73490]
               6. chain f [73491]
            2. 1l2a
               complexed with bgc
               1. chain a [73493]
               2. chain b [73494]
               3. chain c [73495]
               4. chain d [73496]
               5. chain e [73497]
               6. chain f [73498]
      9. Chitosanase [116987]
         1. Bacillus sp., strain k17 [TaxId: 1409] [116988] (2)
            SQ Q9ALZ1 49-434
            1. 1v5d
               complexed with pin
               1. chain a [113537]
               2. chain b [113538]
            2. 1v5c
               complexed with so4
               1. chain a [113536]
      10. Xylanase Y [140784]
          1. Bacillus halodurans [TaxId: 86665] [140785] (3)
             SQ Q9KB30 6-381
             1. 1wu4
                complexed with gol, ni; mutant
                1. region a:6-381 [121272]
             2. 1wu6
                complexed with gol, ni, xyp; mutant
                1. region a:6-381 [121274]
             3. 1wu5
                automatically matched to 1WU4 A:6-381
                complexed with gol, ni, xyp; mutant
                1. region a:6-381 [121273]
      11. Probable endoglucanase CmcAX [140786]
          1. Acetobacter xylinus [TaxId: 28448] [140787] (1)
             SQ P37696 23-341
             1. 1wzz
                complexed with so4
                1. region a:23-341 [121536]
   3. N-acylglucosamine (NAG) epimerase [48222] (2)
      1. N-acyl-D-glucosamine 2-epimerase [48223]
         1. Pig (Sus scrofa) [TaxId: 9823] [48224] (1)
            1. 1fp3
               1. chain a [18842]
               2. chain b [18843]
      2. Putative NAG isomerase YihS [140788]
         1. Salmonella typhimurium [TaxId: 90371] [140789] (6)
            SQ Q8ZKT7 2-413
            1. 2afa
               1. region a:4-415 [126668]
            2. 2afa
               automatically matched to 2AFA A:4-415
               1. region b:4-415 [126669]
            3. 2afa
               automatically matched to 2AFA A:4-415
               1. region c:4-415 [126670]
            4. 2afa
               automatically matched to 2AFA A:4-415
               1. region d:4-415 [126671]
            5. 2afa
               automatically matched to 2AFA A:4-415
               1. region e:4-415 [126672]
            6. 2afa
               automatically matched to 2AFA A:4-415
               1. region f:4-415 [126673]
   4. Glycosyltransferase family 36 C-terminal domain [63588] (2)
      overall domain organization is similar to Bacterial glucoamylase
      1. Lactobacillus maltose phosphorylase, central domain [63589]
         includes alpha-helical linker to the N-terminal domain and a small C-terminal beta-sandwich subdomain
         1. Lactobacillus brevis [TaxId: 1580] [63590] (1)
            1. 1h54
               complexed with k, po4
               1. region a:269-753 [60634]
               2. region b:269-754 [60636]
      2. Chitobiose phosphorylase ChbP [109951]
         1. Vibrio proteolyticus [TaxId: 671] [109952] (3)
            SQ Q76IQ9
            1. 1v7w
               complexed with ca, cl, nag
               1. region a:271-801 [108411]
            2. 1v7v
               complexed with ca
               1. region a:271-801 [108409]
            3. 1v7x
               complexed with ca, nag, so4
               1. region a:271-801 [108413]
   5. Bacterial glucoamylase C-terminal domain-like [81850] (2)
      overall domain organization is similar to Lactobacillus maltose phosphorylase
      1. Bacterial glucoamylase, C-terminal domain [81851]
         1. Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517] [81852] (2)
            1. 1lf6
               complexed with so4
               1. region a:288-684 [77918]
               2. region b:288-684 [77920]
            2. 1lf9
               complexed with acr, so4
               1. region a:288-684 [77922]
               2. region b:288-684 [77924]
      2. Glucodextranase, domain A [101365]
         1. Arthrobacter globiformis [TaxId: 1665] [101366] (2)
            1. 1ulv
               complexed with acr, ca
               1. region a:274-686 [99571]
            2. 1ug9
               complexed with ca, gol
               1. region a:274-686 [99361]
   6. Hypothetical protein YteR [89108] (1)
      unknown function; weak sequence similarity to the catalytic domain of cellulases
      1. Hypothetical protein YteR [89109]
         1. Bacillus subtilis [TaxId: 1423] [89110] (2)
            1. 1nc5
               structural genomics
               1. chain a [85548]
            2. 2d8l
               automatically matched to d1nc5a_
               complexed with ucd
               1. region a:11-373 [131332]
   7. Glycosyl Hydrolase Family 88 [109953] (1)
      Pfam 07470
      1. Unsaturated glucuronyl hydrolase [109954]
         1. Bacillus sp. GL1 [TaxId: 84635] [109955] (4)
            SQ Q9RC92
            1. 2d5j
               automatically matched to d1vd5a_
               1. region a:1-377 [131271]
            2. 2d5j
               automatically matched to d1vd5a_
               1. region b:1-377 [131272]
            3. 1vd5
               complexed with dtt, gly, mpd
               1. chain a [108518]
            4. 2fuz
               automatically matched to d1vd5a_
               complexed with mpd
               1. region a:1-377 [134193]
   8. CPF0428-like [158737] (2)
      Pfam 06824; DUF1237
      1. Hypothetical protein BT3781 [158738]
         1. Bacteroides thetaiotaomicron [TaxId: 818] [158739] (2)
            SQ Q8A185 39-481
            1. 2p0v
               1. region a:39-481 [149142]
            2. 2p0v
               automatically matched to 2P0V A:39-481
               1. region b:39-481 [149143]
      2. Hypothetical protein CPF0428 [158740]
         1. Clostridium perfringens [TaxId: 1502] [158741] (1)
            SQ Q0TU05 2-427
            1. 2nvp
               1. region a:2-427 [148478]
   9. Trehalase-like [158742] (1)
      Pham 01204
      1. Periplasmic trehalase TreA [158743]
         1. Escherichia coli [TaxId: 562] [158744] (2)
            SQ P13482 37-547
            1. 2jg0
               automatically matched to 2JF4 A:37-547
               complexed with ttz
               1. region a:37-547 [148034]
            2. 2jf4
               complexed with vdm
               1. region a:37-547 [148029]
2. Seven-hairpin glycosidases [48225] (1)
   uperfamily
   1. Class I alpha-1;2-mannosidase, catalytic domain [48226] (5)
      1. Class I alpha-1;2-mannosidase, catalytic domain [48227]
         1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [48228] (2)
            1. 1dl2
               1. chain a [18844]
            2. 1g6i
               complexed with ca, dmj, man, nag
               1. chain a [83272]
         2. Trichoderma reesei [TaxId: 51453] [69087] (1)
            1. 1hcu
               complexed with ca, nag
               1. chain a [65796]
               2. chain b [65797]
               3. chain c [65798]
               4. chain d [65799]
         3. Fungus (Penicillium citrinum) [TaxId: 5077] [69088] (7)
            1. 2ri9
               automatically matched to d1kkta_
               complexed with ca, gol, ldy, man, mma, nag, ndg
               1. region a:1036-1510 [152057]
            2. 2ri9
               automatically matched to d1kkta_
               complexed with ca, gol, ldy, man, mma, nag, ndg
               1. region b:2036-2510 [152058]
            3. 1kre
               complexed with ca, dmj, man, nag
               1. chain a [68848]
               2. chain b [68849]
            4. 1krf
               complexed with ca, kif, man, nag
               1. chain a [68850]
               2. chain b [68851]
            5. 1kkt
               complexed with ca, man, nag
               1. chain a [68687]
               2. chain b [68688]
            6. 2ri8
               automatically matched to d1kkta_
               complexed with ca, gol, man, nag
               1. region a:1036-1510 [152055]
            7. 2ri8
               automatically matched to d1kkta_
               complexed with ca, gol, man, nag
               1. region b:2036-2510 [152056]
         4. Human (Homo sapiens) [TaxId: 9606] [48229] (4)
            1. 1x9d
               automatically matched to d1fmia_
               complexed with bu1, ca, smd, so4
               1. region a:245-697 [121810]
            2. 1fo3
               complexed with ca, kif, so4; mutant
               1. chain a [18845]
            3. 1fmi
               complexed with ca, so4
               1. chain a [18846]
            4. 1fo2
               complexed with ca, dmj, so4; mutant
               1. chain a [18847]
         5. Mouse (Mus musculus) [TaxId: 10090] [101367] (1)
            1. 1nxc
               complexed with ca, man, nag
               1. chain a [92293]
3. Chondroitin AC/alginate lyase [48230] (2)
   incomplete toroid
   uperfamily
   1. Alginate lyase A1-III [48231] (1)
      1. Alginate lyase A1-III [48232]
         1. Sphingomonas sp., A1 [TaxId: 28214] [48233] (2)
            1. 1qaz
               complexed with so4
               1. chain a [18848]
            2. 1hv6
               complexed with gc4, gcu, so4
               1. chain a [61294]
   2. Hyaluronate lyase-like catalytic, N-terminal domain [48234] (6)
      1. Chondroitinase AC [48235]
         Chondroitin AC lyase
         1. Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984] [48236] (5)
            1. 1cb8
               complexed with ca, gcu, gol, man, mfu, ram, xys
               1. region a:26-335 [18849]
            2. 1hmu
               complexed with ca, gcu, idt, man, mxy, ngl, ram, xys; mutant
               1. region a:26-335 [61089]
            3. 1hm2
               complexed with ca, gcu, idr, man, mxy, ngl, ram, xys; mutant
               1. region a:26-335 [61083]
            4. 1hm3
               complexed with ca, gcu, man, mxy, nag, ram, xys; mutant
               1. region a:26-335 [61086]
            5. 1hmw
               complexed with ca, gcd, gcu, man, mxy, ng6, ngl, ram, xys; mutant
               1. region a:26-335 [61092]
         2. Arthrobacter aurescens [TaxId: 43663] [101368] (6)
            1. 1rwh
               complexed with gad, gct, gol, na, ngl, po4
               1. region a:4-372 [97984]
            2. 1rwa
               complexed with gol, hg
               1. region a:4-372 [97967]
            3. 1rw9
               complexed with na, po4
               1. region a:4-372 [97964]
            4. 1rwf
               complexed with gad, gct, na, ngl, po4
               1. region a:4-372 [97978]
            5. 1rwg
               complexed with gad, gct, na, ngl, po4
               1. region a:4-372 [97981]
            6. 1rwc
               complexed with gad, gol, na, nag, po4
               1. region a:4-372 [97974]
      2. Hyaluronate lyase [48237]
         1. Streptococcus pneumoniae [TaxId: 1313] [48238] (19)
            SQ Q54873 287-1007
            1. 1n7o
               mutant
               1. region a:170-540 [80259]
            2. 1ojn
               complexed with dgc, ng6, so4; mutant
               1. region a:170-540 [93137]
            3. 1n7n
               mutant
               1. region a:170-540 [80256]
            4. 1w3y
               complexed with pvc, so4, xyl
               1. region a:170-540 [109168]
            5. 1n7p
               mutant
               1. region a:170-540 [80262]
            6. 1lxk
               complexed with gcu, nag; mutant
               1. region a:171-540 [74331]
            7. 1ojo
               complexed with dgc, ngl, so4; mutant
               1. region a:170-540 [93140]
            8. 1egu
               complexed with so4
               1. region a:171-540 [18850]
            9. 1ojm
               complexed with dgc, nga, so4
               1. region a:170-540 [93134]
            10. 1ojp
                complexed with dgc, ng6, so4
                1. region a:170-540 [93143]
            11. 2brp
                automatically matched to d1f9ga1
                complexed with sie, so4, xls
                1. region a:170-540 [129005]
            12. 1c82
                complexed with cac, gc4, na, nag
                1. region a:171-540 [59079]
            13. 1n7r
                complexed with gcu, nag; mutant
                1. region a:170-540 [80268]
            14. 1f9g
                complexed with asc
                1. region a:170-540 [59738]
            15. 1loh
                complexed with gcu, nag; mutant
                1. region a:170-540 [74147]
            16. 1n7q
                complexed with gcu, nag; mutant
                1. region a:170-540 [80265]
            17. 2brw
                automatically matched to d1f9ga1
                complexed with so4
                1. region a:170-540 [129022]
            18. 2brw
                automatically matched to d1f9ga1
                complexed with so4
                1. region b:170-540 [129025]
            19. 2brv
                automatically matched to d1f9ga1
                complexed with mla
                1. region x:170-540 [129019]
         2. Streptococcus agalactiae [TaxId: 1311] [69089] (3)
            preceded by a small all-beta Ig-like domain
            1. 1f1s
               1. region a:249-619 [64928]
            2. 1lxm
               complexed with gcu, nag
               1. region a:249-619 [78296]
            3. 1i8q
               complexed with gc4, nag
               1. region a:249-619 [66090]
      3. Xanthan lyase [89111]
         1. Bacillus sp. gl1 [TaxId: 84635] [89112] (7)
            1. 1x1i
               automatically matched to d1j0ma1
               complexed with 46m; mutant
               1. region a:26-386 [121584]
            2. 2e24
               automatically matched to d1j0ma1
               complexed with peg; mutant
               1. region a:26-386 [131976]
            3. 1x1j
               automatically matched to d1j0ma1
               complexed with 46d, ca; mutant
               1. region a:26-386 [121587]
            4. 1x1h
               automatically matched to d1j0ma1
               mutant
               1. region a:26-386 [121581]
            5. 2e22
               automatically matched to d1j0ma1
               complexed with man
               1. region a:26-386 [131973]
            6. 1j0m
               complexed with ca
               1. region a:26-386 [83910]
            7. 1j0n
               complexed with ca, ceg
               1. region a:26-386 [83913]
      4. Chondroitin ABC lyase I [89113]
         domain 2; preceded by a beta-domain of the galactose-binding domain-like fold
         1. Proteus vulgaris [TaxId: 585] [89114] (1)
            1. 1hn0
               complexed with na
               1. region a:235-618 [83616]
4. Family 10 polysaccharide lyase [81853] (1)
   uperfamily
   1. Family 10 polysaccharide lyase [81854] (2)
      incomplete toroid made of four hairpins
      1. Polygalacturonic acid lyase (pectate lyase) [81855]
         1. Cellvibrio cellulosa [TaxId: 155077] [81856] (3)
            1. 1gxm
               complexed with gol
               1. chain a [76371]
               2. chain b [76372]
            2. 1gxn
               1. chain a [76373]
            3. 1gxo
               complexed with ada, ca; mutant
               1. chain a [76374]
         2. Azospirillum irakense [TaxId: 34011] [109956] (1)
            SQ Q9X592
            1. 1r76
               complexed with cl, gol, hg, ipa
               1. chain a [104830]
5. Terpenoid cyclases/Protein prenyltransferases [48239] (4)
   uperfamily
   1. Terpenoid cyclase N-terminal domain [48240] (2)
      incomplete toroid made of four hairpins
      1. 5-Epi-aristolochene synthase [48241]
         1. Tobacco (Nicotiana tabacum) [TaxId: 4097] [48242] (7)
            1. 5eas
               complexed with mg; mutant
               1. region a:24-220 [18852]
            2. 5eau
               complexed with fff, mg; mutant
               1. region a:21-220 [18851]
            3. 1hxa
               complexed with fhp, mg; mutant
               1. region a:21-220 [83641]
            4. 1hxc
               complexed with fhp; mutant
               1. region a:21-220 [83643]
            5. 5eat
               complexed with fhp, mg
               1. region a:17-220 [18853]
            6. 1hxg
               complexed with mg; mutant
               1. region a:15-220 [83645]
            7. 1hx9
               complexed with fhp, mg; mutant
               1. region a:21-220 [83639]
      2. (+)-bornyl diphosphate synthase [81857]
         1. Garden sage (Salvia officinalis) [TaxId: 38868] [81858] (7)
            1. 1n1b
               complexed with hg, mg
               1. region a:64-270 [79799]
               2. region b:62-270 [79801]
            2. 1n24
               complexed with bp2, mg
               1. region a:54-270 [79846]
               2. region b:62-270 [79848]
            3. 1n20
               complexed with 3ag, mg
               1. region a:54-270 [79832]
               2. region b:61-270 [79834]
            4. 1n1z
               complexed with btb, mg, pop
               1. region a:54-270 [79828]
               2. region b:65-270 [79830]
            5. 1n23
               complexed with 2bn, mg, pop
               1. region a:55-270 [79842]
               2. region b:61-270 [79844]
            6. 1n22
               complexed with 7a8, mg, pop
               1. region a:54-270 [79838]
               2. region b:64-270 [79840]
            7. 1n21
               complexed with 3ag, mg
               1. region a:53-270 [79836]
   2. Terpene synthases [48243] (2)
      consists of two toroid domains: one of six and one of five hairpins
      1. Squalene-hopene cyclase [48244]
         1. Alicyclobacillus acidocaldarius [TaxId: 405212] [48245] (16)
            1. 2sqc
               complexed with c8e; mutant
               1. region a:8-36,a:308-630 [18854]
               2. region a:37-307 [18855]
               3. region b:8-36,b:308-630 [18856]
               4. region b:37-307 [18857]
            2. 1ump
               complexed with c8e, sqa
               1. region a:10-36,a:308-629 [99619]
               2. region a:37-307 [99620]
               3. region b:10-36,b:308-629 [99621]
               4. region b:37-307 [99622]
               5. region c:10-36,c:308-629 [99623]
               6. region c:37-307 [99624]
            3. 1sqc
               complexed with lda
               1. region a:10-36,a:308-628 [18858]
               2. region a:37-307 [18859]
            4. 1h36
               complexed with c8e, r88
               1. region a:10-36,a:308-629 [90556]
               2. region a:37-307 [90557]
               3. region b:10-36,b:308-629 [90558]
               4. region b:37-307 [90559]
               5. region c:10-36,c:308-629 [90560]
               6. region c:37-307 [90561]
            5. 1o6r
               complexed with c8e, r19
               1. region a:10-36,a:308-629 [92583]
               2. region a:37-307 [92584]
               3. region b:10-36,b:308-629 [92585]
               4. region b:37-307 [92586]
               5. region c:10-36,c:308-629 [92587]
               6. region c:37-307 [92588]
            6. 1o6h
               complexed with c8e, w37
               1. region a:10-36,a:308-629 [92568]
               2. region a:37-307 [92569]
               3. region b:10-36,b:308-629 [92570]
               4. region b:37-307 [92571]
               5. region c:10-36,c:308-629 [92572]
               6. region c:37-307 [92573]
            7. 1h3b
               complexed with c8e, r46
               1. region a:10-36,a:308-629 [90580]
               2. region a:37-307 [90581]
               3. region b:10-36,b:308-629 [90582]
               4. region b:37-307 [90583]
               5. region c:10-36,c:308-629 [90584]
               6. region c:37-307 [90585]
            8. 1h35
               complexed with c8e, r01
               1. region a:10-36,a:308-629 [90550]
               2. region a:37-307 [90551]
               3. region b:10-36,b:308-629 [90552]
               4. region b:37-307 [90553]
               5. region c:10-36,c:308-629 [90554]
               6. region c:37-307 [90555]
            9. 1h37
               complexed with c8e, r02
               1. region a:10-36,a:308-629 [90562]
               2. region a:37-307 [90563]
               3. region b:10-36,b:308-629 [90564]
               4. region b:37-307 [90565]
               5. region c:10-36,c:308-629 [90566]
               6. region c:37-307 [90567]
            10. 1h39
                complexed with c8e, r03
                1. region a:10-36,a:308-629 [90568]
                2. region a:37-307 [90569]
                3. region b:10-36,b:308-629 [90570]
                4. region b:37-307 [90571]
                5. region c:10-36,c:308-629 [90572]
                6. region c:37-307 [90573]
            11. 3sqc
                mutant
                1. region a:10-36,a:308-628 [18860]
                2. region a:37-307 [18861]
                3. region b:10-36,b:308-628 [18862]
                4. region b:37-307 [18863]
                5. region c:10-36,c:308-628 [18864]
                6. region c:37-307 [18865]
            12. 1h3a
                complexed with c8e, r04
                1. region a:10-36,a:308-629 [90574]
                2. region a:37-307 [90575]
                3. region b:10-36,b:308-629 [90576]
                4. region b:37-307 [90577]
                5. region c:10-36,c:308-629 [90578]
                6. region c:37-307 [90579]
            13. 1o6q
                complexed with c8e, r17
                1. region a:10-36,a:308-629 [92577]
                2. region a:37-307 [92578]
                3. region b:10-36,b:308-629 [92579]
                4. region b:37-307 [92580]
                5. region c:10-36,c:308-629 [92581]
                6. region c:37-307 [92582]
            14. 1gsz
                complexed with c8e, r71
                1. region a:10-36,a:308-628 [76329]
                2. region a:37-307 [76330]
                3. region b:10-36,b:308-628 [76331]
                4. region b:37-307 [76332]
                5. region c:10-36,c:308-628 [76333]
                6. region c:37-307 [76334]
            15. 1o79
                complexed with c8e, r23
                1. region a:10-36,a:308-629 [92602]
                2. region a:37-307 [92603]
                3. region b:10-36,b:308-629 [92604]
                4. region b:37-307 [92605]
                5. region c:10-36,c:308-629 [92606]
                6. region c:37-307 [92607]
            16. 1h3c
                complexed with c8e, r79
                1. region a:10-36,a:308-629 [90586]
                2. region a:37-307 [90587]
                3. region b:10-36,b:308-629 [90588]
                4. region b:37-307 [90589]
                5. region c:10-36,c:308-629 [90590]
                6. region c:37-307 [90591]
      2. Lanosterol synthase [116989]
         1. Human (Homo sapiens) [TaxId: 9606] [116990] (2)
            SQ P48449
            1. 1w6k
               complexed with bog, lan
               1. region a:6-99,a:379-732 [114271]
               2. region a:100-378 [114272]
            2. 1w6j
               complexed with bog, c14, r71
               1. region a:6-99,a:379-732 [114269]
               2. region a:100-378 [114270]
   3. Protein prenyltransferases [48246] (3)
      1. Protein farnesyltransferase, beta-subunit [48247]
         1. Rat (Rattus norvegicus) [TaxId: 10116] [48248] (29)
            SQ Q02293 22-418 P53610
            1. 1d8d
               complex with K-ras4b peptide substrate
               1. chain b [18866]
            2. 1jcr
               complexed with acy, fpp, zn
               1. chain b [66507]
            3. 1kzp
               complex with k-ras4b peptide product
               complexed with acy, far, zn
               1. chain b [77641]
            4. 1jcs
               complexed with acy, fii, zn
               1. chain b [66509]
            5. 1kzo
               complex with k-ras4b peptide product and farnesyl diphosphate substrate bound simultaneously
               complexed with acy, far, fpp, zn
               1. chain b [77639]
            6. 2r2l
               automatically matched to d1ft1b_
               complexed with fpp, pb9, zn
               1. region b:23-423 [151536]
            7. 1o1t
               complexed with 2nh, mg, zn
               1. chain b [86552]
            8. 1o5m
               complexed with 336, fpp, zn
               1. chain b [92508]
            9. 1o1r
               complexed with grg, zn
               1. chain b [86548]
            10. 1o1s
                complexed with 1nh, zn
                1. chain b [86550]
            11. 1ft1
                complexed with zn
                1. chain b [18867]
            12. 1sa5
                complexed with acy, bmv, fpp, zn
                1. chain b [105405]
            13. 1s64
                complexed with 778, cl, mes, so4, zn
                1. chain b [105288]
                2. chain d [105290]
                3. chain f [105292]
                4. chain h [105294]
                5. chain j [105296]
                6. chain l [105298]
            14. 1n4q
                complexed with cl, mgm, tth, zn
                1. chain b [91636]
                2. chain d [91638]
                3. chain f [91640]
                4. chain h [91642]
                5. chain j [91644]
                6. chain l [91646]
            15. 1n4s
                complexed with cl, grg, tth, zn
                1. chain b [91660]
                2. chain d [91662]
                3. chain f [91664]
                4. chain h [91666]
                5. chain j [91668]
                6. chain l [91670]
            16. 2bed
                automatically matched to d1ft1b_
                complexed with 736, fpp, zn
                1. region b:23-423 [128376]
            17. 1qbq
                complexed with ace, act, hfp, zn
                1. chain b [18868]
            18. 1n4p
                complexed with cl, grg, tth, zn
                1. chain b [91624]
                2. chain d [91626]
                3. chain f [91628]
                4. chain h [91630]
                5. chain j [91632]
                6. chain l [91634]
            19. 3dpy
                automatically matched to d1ft1b_
                complexed with acy, fpp, zn
                1. region b:22-423 [157826]
            20. 1n4r
                complexed with cl, mes, so4, tth, zn
                1. chain b [91648]
                2. chain d [91650]
                3. chain f [91652]
                4. chain h [91654]
                5. chain j [91656]
                6. chain l [91658]
            21. 1d8e
                complex with k-ras4b peptide substrate and FPP analog
                complexed with ace, fii
                1. chain b [18869]
            22. 1nl4
                complexed with ftl, hfp, zn; mutant
                1. chain b [80618]
            23. 1n95
                complexed with fth, hfp, zn
                1. chain b [80334]
            24. 1ft2
                complexed with fpp, zn
                1. chain b [18871]
            25. 1fpp
                complexed with fpp, po4, zn
                1. chain b [18870]
            26. 1ni1
                complexed with 2c5, hfp, zn
                1. chain b [91889]
            27. 1x81
                complexed with jan, zn
                1. chain b [114954]
            28. 1n9a
                complexed with fti, hfp, zn
                1. chain b [80339]
            29. 1n94
                complexed with hfp, tin, zn
                1. chain b [80332]
         2. Human (Homo sapiens) [TaxId: 9606] [69090] (19)
            SQ P49356
            1. 2h6f
               automatically matched to d1jcqb_
               complexed with acy, far, suc, zn; mutant
               1. region b:521-921 [136186]
            2. 2h6h
               complexed with acy, far, suc, zn; mutant
               1. region b:515-924 [145283]
            3. 1tn6
               complexed with acy, fii, suc, zn; mutant
               1. chain b [112528]
            4. 2iej
               automatically matched to d1jcqb_
               complexed with act, fii, s48, suc, zn
               1. region b:521-921 [137314]
            5. 1s63
               complexed with 778, fpp, suc, zn
               1. chain b [105286]
            6. 1ld8
               complexed with acy, fpp, suc, u49, zn
               1. chain b [73839]
            7. 1mzc
               complexed with bne, fpp, suc, zn
               1. chain b [85240]
            8. 1sa4
               complexed with fpp, jan, suc, zn
               1. chain b [105403]
            9. 1ld7
               complexed with fpp, suc, u66, zn
               1. chain b [73837]
            10. 1jcq
                complexed with 739, acy, fpp, suc, zn; mutant
                1. chain b [66505]
            11. 1tn7
                complexed with acy, fii, zn
                1. chain b [112530]
            12. 1tn8
                complexed with acy, fii, zn; mutant
                1. chain b [112532]
            13. 1tno
                complexed with cl, mes, mgm, zn
                1. chain b [112546]
                2. chain d [112548]
                3. chain f [112550]
                4. chain h [112552]
                5. chain j [112554]
                6. chain l [112556]
            14. 1tny
                complexed with cl, mes, mgm, zn
                1. chain b [112570]
                2. chain d [112572]
                3. chain f [112574]
                4. chain h [112576]
                5. chain j [112578]
                6. chain l [112580]
            15. 1tnu
                complexed with cl, mes, mgm, zn
                1. chain b [112558]
                2. chain d [112560]
                3. chain f [112562]
                4. chain h [112564]
                5. chain j [112566]
                6. chain l [112568]
            16. 1tnb
                complexed with cl, mes, mgm, zn
                1. chain b [112534]
                2. chain d [112536]
                3. chain f [112538]
                4. chain h [112540]
                5. chain j [112542]
                6. chain l [112544]
            17. 1tnz
                complexed with cl, mes, mgm, zn
                1. chain b [112582]
                2. chain d [112584]
                3. chain f [112586]
                4. chain h [112588]
                5. chain j [112590]
                6. chain l [112592]
            18. 2f0y
                automatically matched to d1jcqb_
                complexed with 3mn, fpp, zn
                1. region b:21-421 [132682]
            19. 2h6i
                complexed with ger, suc, zn; mutant
                1. region b:515-924 [145284]
      2. Rab geranylgeranyltransferase, beta subunit [48249]
         1. Rat (Rattus norvegicus) [TaxId: 10116] [48250] (9)
            1. 3dss
               automatically matched to d1dceb_
               complexed with ca, zn
               1. region b:7-331 [157841]
            2. 3dst
               automatically matched to d1dceb_
               complexed with ca, grg, zn
               1. region b:7-331 [157842]
            3. 3dsu
               automatically matched to d1dceb_
               complexed with ca, fpp, zn
               1. region b:7-331 [157843]
            4. 3dsv
               automatically matched to d1dceb_
               complexed with ca, ger, zn
               1. region b:7-331 [157844]
            5. 3dsx
               automatically matched to d1dceb_
               complexed with ca, ger, zn
               1. region b:7-331 [157846]
            6. 3dsw
               automatically matched to d1dceb_
               complexed with ca, ger, zn
               1. region b:7-330 [157845]
            7. 1dce
               complexed with zn
               1. chain b [18872]
               2. chain d [18873]
            8. 3c72
               automatically matched to d1dceb_
               complexed with ca, cx1, zn
               1. region b:7-331 [155997]
            9. 1ltx
               complexed with cl, far, zn2; mutant
               1. chain b [84714]
   4. Complement components [48251] (3)
      probably related to other families, but has no known enzymatic activity
      1. C3D, a C3 fragment and ligand for complement receptor 2 [48252]
         1. Human (Homo sapiens) [TaxId: 9606] [48253] (11)
            1. 1c3d
               complexed with gol; mutant
               1. chain a [18874]
            2. 1ghq
               complexed with nag, zn; mutant
               1. chain a [60521]
            3. 3d5r
               automatically matched to d1ghqa_
               mutant
               1. region a:12-297 [157403]
            4. 3d5r
               automatically matched to d1ghqa_
               mutant
               1. region b:12-297 [157404]
            5. 3d5s
               automatically matched to d1ghqa_
               mutant
               1. region a:12-297 [157407]
            6. 3d5s
               automatically matched to d1ghqa_
               mutant
               1. region b:12-297 [157408]
            7. 2noj
               automatically matched to d1ghqa_
               mutant
               1. region a:1001-1286 [148324]
            8. 2noj
               automatically matched to d1ghqa_
               mutant
               1. region c:1001-1286 [148326]
            9. 2noj
               automatically matched to d1ghqa_
               mutant
               1. region e:1001-1286 [148328]
            10. 2noj
                automatically matched to d1ghqa_
                mutant
                1. region g:1001-1286 [148330]
            11. 1w2s
                automatically matched to d1ghqa_
                1. region a:1-307 [120604]
         2. Rat (Rattus norvegicus) [TaxId: 10116] [48254] (2)
            1. 1qqf
               N-terminally truncated fragment
               1. chain a [18875]
            2. 1qsj
               N-terminally truncated fragment
               mutant
               1. chain a [18876]
               2. chain b [18877]
               3. chain c [18878]
               4. chain d [18879]
      2. C4adg fragment of complement factor C4a [81859]
         1. Human (Homo sapiens) [TaxId: 9606] [81860] (1)
            1. 1hzf
               complexed with mse
               1. chain a [76731]
6. LanC-like [158745] (1)
   comprises seven hairpins
   1. LanC-like [158746] (1)
      Pfam 05147; there are seven internal sequence repeats
      1. Nisin biosynthesis protein NisC [158747]
         1. Lactococcus lactis [TaxId: 1358] [158748] (2)
            SQ Q03202 7-415
            1. 2g0d
               automatically matched to 2G02 A:7-415
               complexed with zn
               1. region a:7-415 [147057]
            2. 2g02
               complexed with zn
               1. region a:7-415 [147056]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk