Structural Classification of Proteins
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Superfamily: Chondroitin AC/alginate lyase

incomplete toroid
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: alpha/alpha toroid [48207]
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. Superfamily: Chondroitin AC/alginate lyase [48230]
    incomplete toroid
    link to SUPERFAMILY database - Superfamily

Families:

  1. Alginate lyase A1-III [48231] (1)
    1. Alginate lyase A1-III [48232]
      1. Sphingomonas sp., A1 [TaxId: 28214] [48233] (2)
        1. 1qaz picpic
          complexed with so4
          1. chain a [18848] picpiclink
        2. 1hv6 picpic
          complexed with gc4, gcu, so4
          1. chain a [61294] picpiclink
  2. Hyaluronate lyase-like catalytic, N-terminal domain [48234] (6)
    1. Chondroitinase AC [48235]
      Chondroitin AC lyase
      1. Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984] [48236] (5)
        1. 1cb8 picpicxrefxref
          complexed with ca, gcu, gol, man, mfu, ram, xys
          1. region a:26-335 [18849] picpiclink
        2. 1hmu picpicxrefxref
          complexed with ca, gcu, idt, man, mxy, ngl, ram, xys; mutant
          1. region a:26-335 [61089] picpiclink
        3. 1hm2 picpicxrefxref
          complexed with ca, gcu, idr, man, mxy, ngl, ram, xys; mutant
          1. region a:26-335 [61083] picpiclink
        4. 1hm3 picpicxrefxref
          complexed with ca, gcu, man, mxy, nag, ram, xys; mutant
          1. region a:26-335 [61086] picpiclink
        5. 1hmw picpicxrefxref
          complexed with ca, gcd, gcu, man, mxy, ng6, ngl, ram, xys; mutant
          1. region a:26-335 [61092] picpiclink
      2. Arthrobacter aurescens [TaxId: 43663] [101368] (6)
        1. 1rwh picpicxrefxref
          complexed with gad, gct, gol, na, ngl, po4
          1. region a:4-372 [97984] picpiclink
        2. 1rwa picpicxrefxref
          complexed with gol, hg
          1. region a:4-372 [97967] picpiclink
        3. 1rw9 picpicxrefxref
          complexed with na, po4
          1. region a:4-372 [97964] picpiclink
        4. 1rwf picpicxrefxref
          complexed with gad, gct, na, ngl, po4
          1. region a:4-372 [97978] picpiclink
        5. 1rwg picpicxrefxref
          complexed with gad, gct, na, ngl, po4
          1. region a:4-372 [97981] picpiclink
        6. 1rwc picpicxrefxref
          complexed with gad, gol, na, nag, po4
          1. region a:4-372 [97974] picpiclink
    2. Hyaluronate lyase [48237]
      1. Streptococcus pneumoniae [TaxId: 1313] [48238] (19)
        SQ Q54873 287-1007
        1. 1n7o picpicxrefxref
          mutant
          1. region a:170-540 [80259] picpiclink
        2. 1ojn picpicxrefxref
          complexed with dgc, ng6, so4; mutant
          1. region a:170-540 [93137] picpiclink
        3. 1n7n picpicxrefxref
          mutant
          1. region a:170-540 [80256] picpiclink
        4. 1w3y picpicxrefxref
          complexed with pvc, so4, xyl
          1. region a:170-540 [109168] picpiclink
        5. 1n7p picpicxrefxref
          mutant
          1. region a:170-540 [80262] picpiclink
        6. 1lxk picpicxrefxref
          complexed with gcu, nag; mutant
          1. region a:171-540 [74331] picpiclink
        7. 1ojo picpicxrefxref
          complexed with dgc, ngl, so4; mutant
          1. region a:170-540 [93140] picpiclink
        8. 1egu picpicxrefxref
          complexed with so4
          1. region a:171-540 [18850] picpiclink
        9. 1ojm picpicxrefxref
          complexed with dgc, nga, so4
          1. region a:170-540 [93134] picpiclink
        10. 1ojp picpicxrefxref
          complexed with dgc, ng6, so4
          1. region a:170-540 [93143] picpiclink
        11. 2brp picpicxrefxref
          automatically matched to d1f9ga1
          complexed with sie, so4, xls
          1. region a:170-540 [129005] picpiclink
        12. 1c82 picpicxrefxref
          complexed with cac, gc4, na, nag
          1. region a:171-540 [59079] picpiclink
        13. 1n7r picpicxrefxref
          complexed with gcu, nag; mutant
          1. region a:170-540 [80268] picpiclink
        14. 1f9g picpicxrefxref
          complexed with asc
          1. region a:170-540 [59738] picpiclink
        15. 1loh picpicxrefxref
          complexed with gcu, nag; mutant
          1. region a:170-540 [74147] picpiclink
        16. 1n7q picpicxrefxref
          complexed with gcu, nag; mutant
          1. region a:170-540 [80265] picpiclink
        17. 2brw picpicxrefxrefxrefxref
          automatically matched to d1f9ga1
          complexed with so4
          1. region a:170-540 [129022] picpiclink
        18. 2brw picpicxrefxrefxrefxref
          automatically matched to d1f9ga1
          complexed with so4
          1. region b:170-540 [129025] picpiclink
        19. 2brv picpicxrefxref
          automatically matched to d1f9ga1
          complexed with mla
          1. region x:170-540 [129019] picpiclink
      2. Streptococcus agalactiae [TaxId: 1311] [69089] (3)
        preceded by a small all-beta Ig-like domain
        1. 1f1s picpicxrefxrefxref
          1. region a:249-619 [64928] picpiclink
        2. 1lxm picpicxrefxrefxref
          complexed with gcu, nag
          1. region a:249-619 [78296] picpiclink
        3. 1i8q picpicxrefxrefxref
          complexed with gc4, nag
          1. region a:249-619 [66090] picpiclink
    3. Xanthan lyase [89111]
      1. Bacillus sp. gl1 [TaxId: 84635] [89112] (7)
        1. 1x1i picpicxrefxref
          automatically matched to d1j0ma1
          complexed with 46m; mutant
          1. region a:26-386 [121584] picpiclink
        2. 2e24 picpicxrefxref
          automatically matched to d1j0ma1
          complexed with peg; mutant
          1. region a:26-386 [131976] picpiclink
        3. 1x1j picpicxrefxref
          automatically matched to d1j0ma1
          complexed with 46d, ca; mutant
          1. region a:26-386 [121587] picpiclink
        4. 1x1h picpicxrefxref
          automatically matched to d1j0ma1
          mutant
          1. region a:26-386 [121581] picpiclink
        5. 2e22 picpicxrefxref
          automatically matched to d1j0ma1
          complexed with man
          1. region a:26-386 [131973] picpiclink
        6. 1j0m picpicxrefxref
          complexed with ca
          1. region a:26-386 [83910] picpiclink
        7. 1j0n picpicxrefxref
          complexed with ca, ceg
          1. region a:26-386 [83913] picpiclink
    4. Chondroitin ABC lyase I [89113]
      domain 2; preceded by a beta-domain of the galactose-binding domain-like fold
      1. Proteus vulgaris [TaxId: 585] [89114] (1)
        1. 1hn0 picpicxrefxrefxref
          complexed with na
          1. region a:235-618 [83616] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk