Structural Classification of Proteins
Superfamily: Terpenoid cyclases/Protein prenyltransferases
uperfamily
Lineage:
Root:
scop
Class:
All alpha proteins
[46456]
Fold:
alpha/alpha toroid
[48207]
multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
Superfamily:
Terpenoid cyclases/Protein prenyltransferases
[48239]
uperfamily
Families:
Terpenoid cyclase N-terminal domain
[48240] (2)
incomplete toroid made of four hairpins
5-Epi-aristolochene synthase [48241]
Tobacco (Nicotiana tabacum)
[TaxId: 4097]
[48242] (7)
5eas
complexed with mg; mutant
region a:24-220
[18852]
5eau
complexed with fff, mg; mutant
region a:21-220
[18851]
1hxa
complexed with fhp, mg; mutant
region a:21-220
[83641]
1hxc
complexed with fhp; mutant
region a:21-220
[83643]
5eat
complexed with fhp, mg
region a:17-220
[18853]
1hxg
complexed with mg; mutant
region a:15-220
[83645]
1hx9
complexed with fhp, mg; mutant
region a:21-220
[83639]
(+)-bornyl diphosphate synthase [81857]
Garden sage (Salvia officinalis)
[TaxId: 38868]
[81858] (7)
1n1b
complexed with hg, mg
region a:64-270
[79799]
region b:62-270
[79801]
1n24
complexed with bp2, mg
region a:54-270
[79846]
region b:62-270
[79848]
1n20
complexed with 3ag, mg
region a:54-270
[79832]
region b:61-270
[79834]
1n1z
complexed with btb, mg, pop
region a:54-270
[79828]
region b:65-270
[79830]
1n23
complexed with 2bn, mg, pop
region a:55-270
[79842]
region b:61-270
[79844]
1n22
complexed with 7a8, mg, pop
region a:54-270
[79838]
region b:64-270
[79840]
1n21
complexed with 3ag, mg
region a:53-270
[79836]
Terpene synthases
[48243] (2)
consists of two toroid domains: one of six and one of five hairpins
Squalene-hopene cyclase [48244]
Alicyclobacillus acidocaldarius
[TaxId: 405212]
[48245] (16)
2sqc
complexed with c8e; mutant
region a:8-36,a:308-630
[18854]
region a:37-307
[18855]
region b:8-36,b:308-630
[18856]
region b:37-307
[18857]
1ump
complexed with c8e, sqa
region a:10-36,a:308-629
[99619]
region a:37-307
[99620]
region b:10-36,b:308-629
[99621]
region b:37-307
[99622]
region c:10-36,c:308-629
[99623]
region c:37-307
[99624]
1sqc
complexed with lda
region a:10-36,a:308-628
[18858]
region a:37-307
[18859]
1h36
complexed with c8e, r88
region a:10-36,a:308-629
[90556]
region a:37-307
[90557]
region b:10-36,b:308-629
[90558]
region b:37-307
[90559]
region c:10-36,c:308-629
[90560]
region c:37-307
[90561]
1o6r
complexed with c8e, r19
region a:10-36,a:308-629
[92583]
region a:37-307
[92584]
region b:10-36,b:308-629
[92585]
region b:37-307
[92586]
region c:10-36,c:308-629
[92587]
region c:37-307
[92588]
1o6h
complexed with c8e, w37
region a:10-36,a:308-629
[92568]
region a:37-307
[92569]
region b:10-36,b:308-629
[92570]
region b:37-307
[92571]
region c:10-36,c:308-629
[92572]
region c:37-307
[92573]
1h3b
complexed with c8e, r46
region a:10-36,a:308-629
[90580]
region a:37-307
[90581]
region b:10-36,b:308-629
[90582]
region b:37-307
[90583]
region c:10-36,c:308-629
[90584]
region c:37-307
[90585]
1h35
complexed with c8e, r01
region a:10-36,a:308-629
[90550]
region a:37-307
[90551]
region b:10-36,b:308-629
[90552]
region b:37-307
[90553]
region c:10-36,c:308-629
[90554]
region c:37-307
[90555]
1h37
complexed with c8e, r02
region a:10-36,a:308-629
[90562]
region a:37-307
[90563]
region b:10-36,b:308-629
[90564]
region b:37-307
[90565]
region c:10-36,c:308-629
[90566]
region c:37-307
[90567]
1h39
complexed with c8e, r03
region a:10-36,a:308-629
[90568]
region a:37-307
[90569]
region b:10-36,b:308-629
[90570]
region b:37-307
[90571]
region c:10-36,c:308-629
[90572]
region c:37-307
[90573]
3sqc
mutant
region a:10-36,a:308-628
[18860]
region a:37-307
[18861]
region b:10-36,b:308-628
[18862]
region b:37-307
[18863]
region c:10-36,c:308-628
[18864]
region c:37-307
[18865]
1h3a
complexed with c8e, r04
region a:10-36,a:308-629
[90574]
region a:37-307
[90575]
region b:10-36,b:308-629
[90576]
region b:37-307
[90577]
region c:10-36,c:308-629
[90578]
region c:37-307
[90579]
1o6q
complexed with c8e, r17
region a:10-36,a:308-629
[92577]
region a:37-307
[92578]
region b:10-36,b:308-629
[92579]
region b:37-307
[92580]
region c:10-36,c:308-629
[92581]
region c:37-307
[92582]
1gsz
complexed with c8e, r71
region a:10-36,a:308-628
[76329]
region a:37-307
[76330]
region b:10-36,b:308-628
[76331]
region b:37-307
[76332]
region c:10-36,c:308-628
[76333]
region c:37-307
[76334]
1o79
complexed with c8e, r23
region a:10-36,a:308-629
[92602]
region a:37-307
[92603]
region b:10-36,b:308-629
[92604]
region b:37-307
[92605]
region c:10-36,c:308-629
[92606]
region c:37-307
[92607]
1h3c
complexed with c8e, r79
region a:10-36,a:308-629
[90586]
region a:37-307
[90587]
region b:10-36,b:308-629
[90588]
region b:37-307
[90589]
region c:10-36,c:308-629
[90590]
region c:37-307
[90591]
Lanosterol synthase [116989]
Human (Homo sapiens)
[TaxId: 9606]
[116990] (2)
SQ
P48449
1w6k
complexed with bog, lan
region a:6-99,a:379-732
[114271]
region a:100-378
[114272]
1w6j
complexed with bog, c14, r71
region a:6-99,a:379-732
[114269]
region a:100-378
[114270]
Protein prenyltransferases
[48246] (3)
Protein farnesyltransferase, beta-subunit [48247]
Rat (Rattus norvegicus)
[TaxId: 10116]
[48248] (29)
SQ
Q02293
22-418
P53610
1d8d
complex with K-ras4b peptide substrate
chain b
[18866]
1jcr
complexed with acy, fpp, zn
chain b
[66507]
1kzp
complex with k-ras4b peptide product
complexed with acy, far, zn
chain b
[77641]
1jcs
complexed with acy, fii, zn
chain b
[66509]
1kzo
complex with k-ras4b peptide product and farnesyl diphosphate substrate bound simultaneously
complexed with acy, far, fpp, zn
chain b
[77639]
2r2l
automatically matched to d1ft1b_
complexed with fpp, pb9, zn
region b:23-423
[151536]
1o1t
complexed with 2nh, mg, zn
chain b
[86552]
1o5m
complexed with 336, fpp, zn
chain b
[92508]
1o1r
complexed with grg, zn
chain b
[86548]
1o1s
complexed with 1nh, zn
chain b
[86550]
1ft1
complexed with zn
chain b
[18867]
1sa5
complexed with acy, bmv, fpp, zn
chain b
[105405]
1s64
complexed with 778, cl, mes, so4, zn
chain b
[105288]
chain d
[105290]
chain f
[105292]
chain h
[105294]
chain j
[105296]
chain l
[105298]
1n4q
complexed with cl, mgm, tth, zn
chain b
[91636]
chain d
[91638]
chain f
[91640]
chain h
[91642]
chain j
[91644]
chain l
[91646]
1n4s
complexed with cl, grg, tth, zn
chain b
[91660]
chain d
[91662]
chain f
[91664]
chain h
[91666]
chain j
[91668]
chain l
[91670]
2bed
automatically matched to d1ft1b_
complexed with 736, fpp, zn
region b:23-423
[128376]
1qbq
complexed with ace, act, hfp, zn
chain b
[18868]
1n4p
complexed with cl, grg, tth, zn
chain b
[91624]
chain d
[91626]
chain f
[91628]
chain h
[91630]
chain j
[91632]
chain l
[91634]
3dpy
automatically matched to d1ft1b_
complexed with acy, fpp, zn
region b:22-423
[157826]
1n4r
complexed with cl, mes, so4, tth, zn
chain b
[91648]
chain d
[91650]
chain f
[91652]
chain h
[91654]
chain j
[91656]
chain l
[91658]
1d8e
complex with k-ras4b peptide substrate and FPP analog
complexed with ace, fii
chain b
[18869]
1nl4
complexed with ftl, hfp, zn; mutant
chain b
[80618]
1n95
complexed with fth, hfp, zn
chain b
[80334]
1ft2
complexed with fpp, zn
chain b
[18871]
1fpp
complexed with fpp, po4, zn
chain b
[18870]
1ni1
complexed with 2c5, hfp, zn
chain b
[91889]
1x81
complexed with jan, zn
chain b
[114954]
1n9a
complexed with fti, hfp, zn
chain b
[80339]
1n94
complexed with hfp, tin, zn
chain b
[80332]
Human (Homo sapiens)
[TaxId: 9606]
[69090] (19)
SQ
P49356
2h6f
automatically matched to d1jcqb_
complexed with acy, far, suc, zn; mutant
region b:521-921
[136186]
2h6h
complexed with acy, far, suc, zn; mutant
region b:515-924
[145283]
1tn6
complexed with acy, fii, suc, zn; mutant
chain b
[112528]
2iej
automatically matched to d1jcqb_
complexed with act, fii, s48, suc, zn
region b:521-921
[137314]
1s63
complexed with 778, fpp, suc, zn
chain b
[105286]
1ld8
complexed with acy, fpp, suc, u49, zn
chain b
[73839]
1mzc
complexed with bne, fpp, suc, zn
chain b
[85240]
1sa4
complexed with fpp, jan, suc, zn
chain b
[105403]
1ld7
complexed with fpp, suc, u66, zn
chain b
[73837]
1jcq
complexed with 739, acy, fpp, suc, zn; mutant
chain b
[66505]
1tn7
complexed with acy, fii, zn
chain b
[112530]
1tn8
complexed with acy, fii, zn; mutant
chain b
[112532]
1tno
complexed with cl, mes, mgm, zn
chain b
[112546]
chain d
[112548]
chain f
[112550]
chain h
[112552]
chain j
[112554]
chain l
[112556]
1tny
complexed with cl, mes, mgm, zn
chain b
[112570]
chain d
[112572]
chain f
[112574]
chain h
[112576]
chain j
[112578]
chain l
[112580]
1tnu
complexed with cl, mes, mgm, zn
chain b
[112558]
chain d
[112560]
chain f
[112562]
chain h
[112564]
chain j
[112566]
chain l
[112568]
1tnb
complexed with cl, mes, mgm, zn
chain b
[112534]
chain d
[112536]
chain f
[112538]
chain h
[112540]
chain j
[112542]
chain l
[112544]
1tnz
complexed with cl, mes, mgm, zn
chain b
[112582]
chain d
[112584]
chain f
[112586]
chain h
[112588]
chain j
[112590]
chain l
[112592]
2f0y
automatically matched to d1jcqb_
complexed with 3mn, fpp, zn
region b:21-421
[132682]
2h6i
complexed with ger, suc, zn; mutant
region b:515-924
[145284]
Rab geranylgeranyltransferase, beta subunit [48249]
Rat (Rattus norvegicus)
[TaxId: 10116]
[48250] (9)
3dss
automatically matched to d1dceb_
complexed with ca, zn
region b:7-331
[157841]
3dst
automatically matched to d1dceb_
complexed with ca, grg, zn
region b:7-331
[157842]
3dsu
automatically matched to d1dceb_
complexed with ca, fpp, zn
region b:7-331
[157843]
3dsv
automatically matched to d1dceb_
complexed with ca, ger, zn
region b:7-331
[157844]
3dsx
automatically matched to d1dceb_
complexed with ca, ger, zn
region b:7-331
[157846]
3dsw
automatically matched to d1dceb_
complexed with ca, ger, zn
region b:7-330
[157845]
1dce
complexed with zn
chain b
[18872]
chain d
[18873]
3c72
automatically matched to d1dceb_
complexed with ca, cx1, zn
region b:7-331
[155997]
1ltx
complexed with cl, far, zn2; mutant
chain b
[84714]
Complement components
[48251] (3)
probably related to other families, but has no known enzymatic activity
C3D, a C3 fragment and ligand for complement receptor 2 [48252]
Human (Homo sapiens)
[TaxId: 9606]
[48253] (11)
1c3d
complexed with gol; mutant
chain a
[18874]
1ghq
complexed with nag, zn; mutant
chain a
[60521]
3d5r
automatically matched to d1ghqa_
mutant
region a:12-297
[157403]
3d5r
automatically matched to d1ghqa_
mutant
region b:12-297
[157404]
3d5s
automatically matched to d1ghqa_
mutant
region a:12-297
[157407]
3d5s
automatically matched to d1ghqa_
mutant
region b:12-297
[157408]
2noj
automatically matched to d1ghqa_
mutant
region a:1001-1286
[148324]
2noj
automatically matched to d1ghqa_
mutant
region c:1001-1286
[148326]
2noj
automatically matched to d1ghqa_
mutant
region e:1001-1286
[148328]
2noj
automatically matched to d1ghqa_
mutant
region g:1001-1286
[148330]
1w2s
automatically matched to d1ghqa_
region a:1-307
[120604]
Rat (Rattus norvegicus)
[TaxId: 10116]
[48254] (2)
1qqf
N-terminally truncated fragment
chain a
[18875]
1qsj
N-terminally truncated fragment
mutant
chain a
[18876]
chain b
[18877]
chain c
[18878]
chain d
[18879]
C4adg fragment of complement factor C4a [81859]
Human (Homo sapiens)
[TaxId: 9606]
[81860] (1)
1hzf
complexed with mse
chain a
[76731]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk