Structural Classification of Proteins
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Fold: A virus capsid protein alpha-helical domain

multihelical; three-helical bundle in the core is surrounded by non-conserved helices

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: A virus capsid protein alpha-helical domain [48344]
    multihelical; three-helical bundle in the core is surrounded by non-conserved helices

Superfamilies:

  1. A virus capsid protein alpha-helical domain [48345] (3)
    this domain is interrupted by a jelly-roll beta-sandwich domain
    link to SUPERFAMILY database - Superfamily
    1. Orbivirus capsid [48346] (1)
      1. BTV vp7 [48347]
        1. Bluetongue virus [TaxId: 40051] [48348] (2)
          1. 1bvp picpicxref
            1. region 1:1-120,1:255-349 [19079] picpiclink
            2. region 2:1-120,2:255-349 [19080] picpiclink
            3. region 3:1-120,3:255-349 [19081] picpiclink
            4. region 4:1-120,4:255-349 [19082] picpiclink
            5. region 5:1-120,5:255-349 [19083] picpiclink
            6. region 6:1-120,6:255-349 [19084] picpiclink
          2. 2btv picpicxrefxref
            1. region p:1-120,p:255-349 [19085] picpiclink
            2. region c:1-120,c:255-349 [19086] picpiclink
            3. region d:1-120,d:255-349 [19087] picpiclink
            4. region q:1-120,q:255-349 [19088] picpiclink
            5. region e:1-120,e:255-349 [19089] picpiclink
            6. region f:1-120,f:255-349 [19090] picpiclink
            7. region r:1-120,r:255-349 [19091] picpiclink
            8. region g:1-120,g:255-349 [19092] picpiclink
            9. region h:1-120,h:255-349 [19093] picpiclink
            10. region s:1-120,s:255-349 [19094] picpiclink
            11. region i:1-120,i:255-349 [19095] picpiclink
            12. region j:1-120,j:255-349 [19096] picpiclink
            13. region t:1-120,t:255-349 [19097] picpiclink
    2. Phytoreovirus capsid [101395] (1)
      1. RDV p8 [101396]
        1. Rice dwarf virus [TaxId: 10991] [101397] (1)
          1. 1uf2 picpicxrefxref
            1. region c:1-147,c:301-421 [99291] picpiclink
            2. region d:1-147,d:301-421 [99293] picpiclink
            3. region e:1-147,e:301-421 [99295] picpiclink
            4. region f:1-147,f:301-421 [99297] picpiclink
            5. region g:1-147,g:301-421 [99299] picpiclink
            6. region h:1-147,h:301-421 [99301] picpiclink
            7. region i:1-147,i:301-421 [99303] picpiclink
            8. region j:1-147,j:301-421 [99305] picpiclink
            9. region p:1-147,p:301-421 [99307] picpiclink
            10. region q:1-147,q:301-421 [99309] picpiclink
            11. region r:1-147,r:301-421 [99311] picpiclink
            12. region s:1-147,s:301-421 [99313] picpiclink
            13. region t:1-147,t:301-421 [99315] picpiclink
    3. vp6, the major capsid protein of group A rotavirus [63596] (1)
      1. vp6, the major capsid protein of group A rotavirus [63597]
        1. Bovine rotavirus [TaxId: 10927] [63598] (1)
          1. 1qhd picpicxref
            complexed with ace, ca, cl, zn
            1. region a:1-148,a:333-397 [63324] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk