Fold: alpha-alpha superhelix

multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: alpha-alpha superhelix [48370]
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

Superfamilies:

1. ARM repeat [48371] (23)
   uperfamily
   1. Armadillo repeat [48372] (9)
   2. Clathrin adaptor core protein [74771] (2)
   3. HEAT repeat [48385] (2)
      Pfam 02985
   4. MIF4G domain-like [100908] (5)
      duplication: family members contains 2 or more structurally similar domains of this fold connected by unstructured linkers
   5. PHAT domain [89129] (1)
      pseudo-HEAT repeat
   6. Mo25 protein [101407] (1)
   7. Leukotriene A4 hydrolase C-terminal domain [63608] (1)
   8. Clathrin heavy chain proximal leg segment [48390] (1)
   9. Clathrin heavy-chain linker domain [48393] (1)
   10. Leucine-rich repeat variant [48396] (1)
   11. Phoshoinositide 3-kinase (PI3K) helical domain [48399] (2)
   12. Pumilio repeat [63611] (1)
   13. Regulatory subunit H of the V-type ATPase [63614] (1)
   14. PBS lyase HEAT-like repeat [101410] (2)
       Pfam 03130
   15. BC3264-like [109965] (2)
       Pfam 06352; DUF1061
   16. Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain [109968] (1)
       N-terminal part of Pfam 06272
   17. Exportin HEAT-like repeat [117002] (1)
   18. B56-like [140819] (1)
       Pfam 01603; Protein phosphatase 2A regulatory B subunit family
   19. HspBP1 domain [140822] (1)
   20. GUN4-associated domain [140825] (2)
       PfamB 089177
   21. Diap1 N-terninal region-like [140830] (1)
       contains two consequitive Pfam domains in one superhelical segment: Pfam 06371 and Pfam 06367
   22. Plakophilin 1 helical region [140833] (1)
   23. RPA1889-like [158764] (1)
       Pfam 09450; DUF2019; similar to the BC3264-like family
2. IP3 receptor type 1 binding core, domain 2 [100909] (1)
   uperfamily
   1. IP3 receptor type 1 binding core, domain 2 [81895] (1)
3. Chemosensory protein Csp2 [100910] (1)
   uperfamily
   1. Chemosensory protein Csp2 [81898] (1)
4. Sec7 domain [48425] (1)
   uperfamily
   1. Sec7 domain [48426] (6)
      Pfam 01369
5. Lipovitellin-phosvitin complex, superhelical domain [48431] (1)
   uperfamily
   1. Lipovitellin-phosvitin complex, superhelical domain [48432] (1)
6. Bacterial muramidases [48435] (1)
   uperfamily
   1. Bacterial muramidases [48436] (1)
7. Aconitase B, N-terminal domain [74778] (1)
   uperfamily
   1. Aconitase B, N-terminal domain [74779] (1)
8. HCP-like [81901] (1)
   uperfamily
   1. HCP-like [81902] (2)
      Helicobacter Cysteine-rich Protein
9. Protein prenylyltransferase [48439] (1)
   uperfamily
   1. Protein prenylyltransferase [48440] (3)
10. 14-3-3 protein [48445] (1)
    uperfamily
    1. 14-3-3 protein [48446] (5)
11. TPR-like [48452] (8)
    uperfamily
    1. Tetratricopeptide repeat (TPR) [48453] (20)
    2. Transcription factor MalT domain III [69094] (1)
    3. BTAD-like [140845] (1)
       Pfam 03704; Bacterial transcriptional activator domain
    4. PrgX C-terminal domain-like [140848] (1)
    5. Atu0120-like [158772] (1)
       Pfam 06041; DUF924
    6. SusD-like [158775] (3)
       TPR-like structure resides in the N-terminal part; the C-terminal part is structurally unique and is covered by Pfam 07980
    7. HAT/Suf repeat [158782] (1)
       includes Pfam 05843
    8. CT2138-like [158785] (1)
       probable biological unit is a homohexamer
12. ENTH/VHS domain [48464] (4)
    uperfamily
    1. ENTH domain [48465] (2)
    2. VHS domain [48468] (5)
    3. Phosphoinositide-binding clathrin adaptor, N-terminal domain [100911] (2)
    4. RPR domain (SMART 00582 ) [109975] (1)
       found in proteins involved in regulation of nuclear pre-mRNA; some sequence similarity to VHS domain
13. Translin [74784] (1)
    uperfamily
    1. Translin [74785] (2)
14. Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain [69099] (1)
    uperfamily
    1. Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain [69100] (2)
15. Arp2/3 complex 16 kDa subunit ARPC5 [69103] (1)
    uperfamily
    1. Arp2/3 complex 16 kDa subunit ARPC5 [69104] (1)
16. FliG [48029] (1)
    fragmented superhelix; consist of 3/4-helical motifs and connecting helices
    uperfamily
    1. FliG [48030] (1)
17. Cullin repeat-like [74788] (2)
    uperfamily
    1. Cullin repeat [74789] (2)
    2. Exocyst complex component [140851] (2)
       includes Pfam 03081
18. C-terminal domain of Ku80 [101420] (1)
    uperfamily
    1. C-terminal domain of Ku80 [101421] (1)
19. Hypothetical protein ST1625 [101424] (1)
    uperfamily
    1. Hypothetical protein ST1625 [101425] (1)
20. Cytochrome c oxidase subunit E [48479] (1)
    uperfamily
    1. Cytochrome c oxidase subunit E [48480] (1)
21. USP8 N-terminal domain-like [140856] (1)
    uperfamily
    1. USP8 N-terminal domain-like [140857] (1)
       PfamB 029795
22. Pseudo ankyrin repeat-like [140860] (1)
    contains three helices per turn of the superhelix
    uperfamily
    1. Pseudo ankyrin repeat [140861] (1)
       one repeat consist of 3 helices; there are similarities in the repeat sequence and assembly with the ankyrin repeat (scop_fa 48404)
23. TROVE domain-like [140864] (1)
    consist of two superhelical sections arranged like a horse-shoe
    uperfamily
    1. TROVE domain-like [140865] (1)
       Pfam 05731
24. MgtE N-terminal domain-like [158791] (1)
    made of short helices; approximately 2.5 helices per turn of superhelix
    1. MgtE N-terminal domain-like [158792] (2)
       Pfam 03448

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk