Structural Classification of Proteins

Superfamily: Terpenoid synthases

: duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
uperfamily

Lineage:

Root: scop
Class: All alpha proteins [46456]
Fold: Terpenoid synthases [48575]
multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers
Superfamily: Terpenoid synthases [48576]
duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
uperfamily

Families:

Isoprenyl diphosphate synthases [48577] (5)
1. Farnesyl diphosphate synthase (geranyltranstransferase) [48578]
  1. Chicken (Gallus gallus) [TaxId: 9031] [48579] (5)
    1. 1fps
      1. chain a [19436]
    2. 1uby
      complexed with dma, mg; mutant
      1. chain a [19435]
    3. 1ubv
      mutant
      1. chain a [19437]
    4. 1ubw
      complexed with gpp, mg; mutant
      1. chain a [19438]
    5. 1ubx
      complexed with fpp, mg; mutant
      1. chain a [19439]
  2. Escherichia coli [TaxId: 562] [101453] (2)
    1. 1rqj
      complexed with ipr, mg, ris
      1. chain a [97744]
      2. chain b [97745]
    2. 1rqi
      complexed with dpo, dst, ipr, mg
      1. chain a [97742]
      2. chain b [97743]
  3. Staphylococcus aureus [TaxId: 1280] [101454] (1)
    1. 1rtr
      1. chain a [97820]
      2. chain b [97821]
2. Octoprenyl-diphosphate synthase [101455]
  1. Thermotoga maritima [TaxId: 2336] [101456] (10)
    SQ Q9X1M1
    1. 1v4e
      complexed with so4
      1. chain a [100296]
      2. chain b [100297]
    2. 1v4i
      complexed with so4; mutant
      1. chain a [100299]
    3. 1v4k
      complexed with so4; mutant
      1. chain a [100302]
    4. 1vg3
      complexed with so4; mutant
      1. chain a [108601]
    5. 1v4h
      complexed with so4; mutant
      1. chain a [100298]
    6. 1v4j
      complexed with so4; mutant
      1. chain a [100300]
      2. chain b [100301]
    7. 1vg6
      mutant
      1. chain a [108604]
    8. 1vg2
      mutant
      1. chain a [108600]
    9. 1vg7
      mutant
      1. chain a [108605]
    10. 1vg4
      mutant
      1. chain a [108602]
      2. chain b [108603]
3. Geranylgeranyl pyrophosphate synthetase [158813]
  1. Human (Homo sapiens) [TaxId: 9606] [158814] (6)
    SQ O95749 6-296
    1. 2q80
      complexed with grg, mg
      1. region a:6-296 [150112]
    2. 2q80
      automatically matched to 2Q80 A:6-296
      complexed with grg, mg
      1. region b:6-295 [150113]
    3. 2q80
      automatically matched to 2Q80 A:6-296
      complexed with grg, mg
      1. region c:6-295 [150114]
    4. 2q80
      automatically matched to 2Q80 A:6-296
      complexed with grg, mg
      1. region d:6-295 [150115]
    5. 2q80
      automatically matched to 2Q80 A:6-296
      complexed with grg, mg
      1. region e:6-295 [150116]
    6. 2q80
      automatically matched to 2Q80 A:6-296
      complexed with grg, mg
      1. region f:6-295 [150117]
Squalene synthase [48580] (1)
1. Squalene synthase [48581]
  synonym: Farnesyl diphosphate farnesyltransferase
  1. Human (Homo sapiens) [TaxId: 9606] [48582] (1)
    1. 1ezf
      complexed with in0; mutant
      1. chain a [19440]
      2. chain b [19441]
      3. chain c [19442]
Terpenoid cyclase C-terminal domain [48583] (2)
1. 5-Epi-aristolochene synthase [48584]
  1. Tobacco (Nicotiana tabacum) [TaxId: 4097] [48585] (7)
    1. 5eas
      complexed with mg; mutant
      1. region a:221-548 [19444]
    2. 5eau
      complexed with fff, mg; mutant
      1. region a:221-548 [19443]
    3. 1hxa
      complexed with fhp, mg; mutant
      1. region a:221-548 [83642]
    4. 1hxc
      complexed with fhp; mutant
      1. region a:221-548 [83644]
    5. 5eat
      complexed with fhp, mg
      1. region a:221-548 [19445]
    6. 1hxg
      complexed with mg; mutant
      1. region a:221-548 [83646]
    7. 1hx9
      complexed with fhp, mg; mutant
      1. region a:221-548 [83640]
2. (+)-bornyl diphosphate synthase [81920]
  1. Garden sage (Salvia officinalis) [TaxId: 38868] [81921] (7)
    1. 1n1b
      complexed with hg, mg
      1. region a:271-598 [79800]
      2. region b:271-598 [79802]
    2. 1n24
      complexed with bp2, mg
      1. region a:271-598 [79847]
      2. region b:271-598 [79849]
    3. 1n20
      complexed with 3ag, mg
      1. region a:271-598 [79833]
      2. region b:271-598 [79835]
    4. 1n1z
      complexed with btb, mg, pop
      1. region a:271-598 [79829]
      2. region b:271-598 [79831]
    5. 1n23
      complexed with 2bn, mg, pop
      1. region a:271-598 [79843]
      2. region b:271-598 [79845]
    6. 1n22
      complexed with 7a8, mg, pop
      1. region a:271-598 [79839]
      2. region b:271-598 [79841]
    7. 1n21
      complexed with 3ag, mg
      1. region a:271-598 [79837]
Aristolochene/pentalenene synthase [48586] (2)
1. Aristolochene synthase [48587]
  1. Fungus (Penicillium roqueforti) [TaxId: 5082] [48588] (2)
    1. 1di1
      1. chain a [19446]
      2. chain b [19447]
    2. 1dgp
      complexed with foh
      1. chain a [19448]
      2. chain b [19449]
2. Pentalenene synthase [48589]
  1. Streptomyces sp., UC5319 [TaxId: 1931] [48590] (3)
    1. 1ps1
      complexed with pbm
      1. chain a [19450]
      2. chain b [19451]
    2. 1hm7
      mutant
      1. chain a [76719]
      2. chain b [76720]
    3. 1hm4
      mutant
      1. chain a [76715]
      2. chain b [76716]
Trichodiene synthase [69113] (1)
1. Trichodiene synthase [69114]
  1. Fusarium sporotrichioides [TaxId: 5514] [69115] (12)
    1. 1kiy
      complexed with edo; mutant
      1. chain a [72555]
      2. chain b [72556]
    2. 1jfa
      complexed with edo
      1. chain a [66622]
      2. chain b [66623]
    3. 1jfg
      complexed with gol, mo1, mo3, pop
      1. chain a [66636]
      2. chain b [66637]
    4. 1kiz
      complexed with edo, mg, pop; mutant
      1. chain a [72557]
      2. chain b [72558]
    5. 2q9z
      automatically matched to d1jfaa_
      complexed with edo, mg, pop
      1. region a:3-354 [150171]
    6. 2q9z
      automatically matched to d1jfaa_
      complexed with edo, mg, pop
      1. region b:3-354 [150172]
    7. 1yyt
      automatically matched to d1kiya_
      complexed with mg, pop, saz; mutant
      1. region a:1-354 [124250]
    8. 1yyt
      automatically matched to d1kiya_
      complexed with mg, pop, saz; mutant
      1. region b:1-354 [124251]
    9. 2q9y
      automatically matched to d1jfaa_
      complexed with btm, edo, mg, pop
      1. region a:3-354 [150169]
    10. 2q9y
      automatically matched to d1jfaa_
      complexed with btm, edo, mg, pop
      1. region b:3-354 [150170]
    11. 1yyu
      automatically matched to d1kiya_
      complexed with edo, mg, pop, raz, saz; mutant
      1. region a:1-354 [124252]
    12. 1yyu
      automatically matched to d1kiya_
      complexed with edo, mg, pop, raz, saz; mutant
      1. region b:1-354 [124253]