Structural Classification of Proteins
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Fold: S15/NS1 RNA-binding domain

3 helices; irregular array

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: S15/NS1 RNA-binding domain [47059]
    3 helices; irregular array

Superfamilies:

  1. S15/NS1 RNA-binding domain [47060] (3)
    link to SUPERFAMILY database - Superfamily
    1. N-terminal, RNA-binding domain of nonstructural protein NS1 [47061] (2)
      1. N-terminal, RNA-binding domain of nonstructural protein NS1 [47062]
        1. Influenza A virus [TaxId: 11320] [47063] (2)
          1. 1ail picpic
            1. chain a [16381] picpiclink
          2. 1ns1 picpic
            1. chain a [16382] picpiclink
            2. chain b [16383] picpiclink
        2. Influenza B virus [TaxId: 11520] [140389] (1)
          SQ P03502 15-103
          1. 1xeq picpic
            complexed with br
            1. region a:15-103 [121915] picpiclink
    2. Ribosomal protein S15 [47064] (3)
      contains additional N-terminal helix that forms a separate unit
      1. Ribosomal protein S15 [47065]
        1. Bacillus stearothermophilus [TaxId: 1422] [47066] (1)
          1. 1a32 picpic
            1. chain a [16384] picpiclink
        2. Thermus thermophilus [TaxId: 274] [47067] (42)
          SQ P80378
          1. 1kuq picpic
            complex with an rRNA fragment
            complexed with so4; mutant
            1. chain a [84470] picpiclink
          2. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 6mz, cm0, k, mg, par, zn
            1. region o:2-89 [139946] picpiclink
          3. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, scm, sry, zn
            1. chain o [16388] picpiclink
          4. 1dk1 picpic
            complex with an rRNA fragment
            complexed with k, mg, na; mutant
            1. chain a [16385] picpiclink
          5. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with unx, zn
            1. chain o [71558] picpiclink
          6. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with k, mg, par, zn
            1. region o:2-89 [140018] picpiclink
          7. 1f7y picpic
            complex with an rRNA fragment
            complexed with k, mg, na
            1. chain a [16386] picpiclink
          8. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 6mz, cm0, k, mg, par, zn
            1. region o:2-89 [139966] picpiclink
          9. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 6mz, cm0, k, mg, par, zn
            1. region o:2-89 [139926] picpiclink
          10. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, t6a, zn
            1. chain o [115544] picpiclink
          11. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, psu, zn
            1. chain o [79884] picpiclink
          12. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 6mz, cm0, k, mg, par, zn
            1. region o:2-89 [139906] picpiclink
          13. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, zn
            1. chain o [115640] picpiclink
          14. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, zn
            1. chain o [115618] picpiclink
          15. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. chain o [16389] picpiclink
          16. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with hyg, mg, zn
            1. chain o [16390] picpiclink
          17. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 5mu, mg, par, zn
            1. region o:2-89 [137880] picpiclink
          18. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 5mu, mg, par, zn
            1. region o:2-89 [137853] picpiclink
          19. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, mnu, par, t6a, zn
            1. chain o [115514] picpiclink
          20. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, tac, zn
            1. chain o [16391] picpiclink
          21. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with zn
            1. region o:2-89 [132039] picpiclink
          22. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, wo2, zn
            1. chain o [62006] picpiclink
          23. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, pcy, zn
            1. chain o [16392] picpiclink
          24. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, psu, zn
            1. chain o [79906] picpiclink
          25. 2fkx picpic
            automatically matched to d1ab3__
            1. region a:1-88 [133685] picpiclink
          26. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with ksg
            1. region o:2-89 [136491] picpiclink
          27. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, wo2, zn
            1. chain o [62050] picpiclink
          28. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with zn
            1. chain o [79928] picpiclink
          29. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, tac, wo2, zn
            1. chain o [62073] picpiclink
          30. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with zn
            1. chain o [79951] picpiclink
          31. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ede, mg, wo2, zn
            1. chain o [62028] picpiclink
          32. 1ab3 picpic
            1. chain a [16395] picpiclink
          33. 2f4v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with ab9, d2c, k, mg, zn
            1. region o:2-89 [132952] picpiclink
          34. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            1. region r:2-89 [136434] picpiclink
          35. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            1. region r:2-89 [136413] picpiclink
          36. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            1. region r:2-89 [136455] picpiclink
          37. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
            1. region p:2-89 [139413] picpiclink
          38. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            1. region r:2-89 [123611] picpiclink
          39. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with psu, yyg
            1. region o:2-89 [127947] picpiclink
          40. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with psu, yyg
            1. region o:2-89 [128177] picpiclink
          41. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ab3__
            complexed with psu, yyg
            1. region o:2-89 [128140] picpiclink
          42. 1g1x picpicxrefxref
            1. chain b [16393] picpiclink
            2. chain g [16394] picpiclink
        3. Escherichia coli [TaxId: 562] [158383] (10)
          SQ Q8X9M2 2-89
          1. 1vs5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with ksg, mg
            1. region o:1-88 [144449] picpiclink
          2. 3df1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with hyg, mg
            1. region o:1-88 [157617] picpiclink
          3. 3df3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with hyg, mg
            1. region o:1-88 [157671] picpiclink
          4. 1vs7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with ksg, mg
            1. region o:1-88 [144490] picpiclink
          5. 2avy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            Representative structure
            complexed with mg
            1. region o:1-88 [144856] picpiclink
          6. 2aw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with mg
            1. region o:1-88 [144899] picpiclink
          7. 2i2p picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with mg
            1. region o:1-88 [145434] picpiclink
          8. 2i2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with mg
            1. region o:1-88 [145476] picpiclink
          9. 2vho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with mg
            1. region o:1-88 [153137] picpiclink
          10. 2vhp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY O:1-88
            complexed with mg
            1. region o:1-88 [153159] picpiclink
    3. a tRNA synthase domain [47068] (3)
      1. Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element [47069]
        1. Chinese hamster (Cricetulus griseus) [TaxId: 10029] [47070] (2)
          1. 1d2d picpic
            1. chain a [16397] picpiclink
          2. 1r1b picpic
            1. chain a [16396] picpiclink
        2. Human (Homo sapiens) [TaxId: 9606] [63499] (1)
          1. 1fyj picpic
            1. chain a [60115] picpiclink
      2. N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) [101103]
        1. Human (Homo sapiens) [TaxId: 9606] [101104] (1)
          1. 1r6t picpicxrefxref
            complexed with gol, tym; mutant
            1. region a:7-60 [97160] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk