Structural Classification of Proteins
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Fold: PGBD-like

core: 3 helices; bundle, closed, left-handed twist; parallel

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: PGBD-like [47089]
    core: 3 helices; bundle, closed, left-handed twist; parallel

Superfamilies:

  1. PGBD-like [47090] (2)
    link to SUPERFAMILY database - Superfamily
    1. Peptidoglycan binding domain, PGBD [47091] (2)
      1. Zn2+ DD-carboxypeptidase, N-terminal domain [47092]
        probable peptidoglycan-binding domain
        1. Streptomyces albus G [TaxId: 1962] [47093] (1)
          1. 1lbu picpicxref
            complexed with zn
            1. region a:1-83 [16416] picpiclink
      2. Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain [140390]
        1. Escherichia coli [TaxId: 562] [140391] (2)
          SQ P75820 195-275
          1. 2bgx picpicxref
            complexed with zn
            1. region a:180-260 [128504] picpiclink
          2. 2bh7 picpicxref
            automatically matched to 2BGX A:180-260
            complexed with so4, zn
            1. region a:180-260 [128516] picpiclink
    2. MMP N-terminal domain [63427] (4)
      1. Fibroblast collagenase (MMP-1) [116864]
        1. Human (Homo sapiens) [TaxId: 9606] [116865] (1)
          SQ P03956 32-466
          1. 1su3 picpicxrefxref
            complexed with ca, cl, epe, na, so4, zn
            1. region a:32-98 [112117] picpiclink
            2. region b:32-98 [112120] picpiclink
      2. Gelatinase A (MMP-2) [63428]
        1. Human (Homo sapiens) [TaxId: 9606] [63430] (3)
          1. 1eak picpicxrefxref
            complexed with ca, so4, zn; mutant
            1. region a:32-107 [70093] picpiclink
            2. region b:32-107 [70098] picpiclink
            3. region c:32-107 [70103] picpiclink
            4. region d:32-107 [70108] picpiclink
          2. 1ck7 picpicxrefxrefxref
            complexed with ca, cl, na, so4, zn; mutant
            1. region a:31-107 [58969] picpiclink
          3. 1gxd picpicxrefxrefxrefxref
            complexed with ca, so4, zn; mutant
            1. region a:1-78 [70691] picpiclink
            2. region b:2-78 [70697] picpiclink
      3. Stromelysin-1 (MMP-3) [63429]
        1. Human (Homo sapiens), fibroblast [TaxId: 9606] [63431] (1)
          1. 1slm picpicxref
            complexed with ca, zn
            1. region a:16-80 [59042] picpiclink
      4. Gelatinase B (MMP-9) [74703]
        1. Human (Homo sapiens) [TaxId: 9606] [74704] (1)
          1. 1l6j picpicxrefxref
            complexed with ca, zn
            1. region a:29-105 [73619] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk