Structural Classification of Proteins
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Fold: PGBD-like

core: 3 helices; bundle, closed, left-handed twist; parallel

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: PGBD-like [47089]
    core: 3 helices; bundle, closed, left-handed twist; parallel

Superfamilies:

  1. PGBD-like [47090] (2)
    link to SUPERFAMILY database - Superfamily
    1. Peptidoglycan binding domain, PGBD [47091] (2)
      1. Zn2+ DD-carboxypeptidase, N-terminal domain [47092]
        probable peptidoglycan-binding domain
        1. Streptomyces albus G [TaxId: 1962] [47093] (1) picpic
      2. Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain [140390]
        1. Escherichia coli [TaxId: 562] [140391] (2) picpic
          SQ P75820 195-275
    2. MMP N-terminal domain [63427] (4)
      1. Fibroblast collagenase (MMP-1) [116864]
        1. Human (Homo sapiens) [TaxId: 9606] [116865] (1) picpic
          SQ P03956 32-466
      2. Gelatinase A (MMP-2) [63428]
        1. Human (Homo sapiens) [TaxId: 9606] [63430] (3) picpic
      3. Stromelysin-1 (MMP-3) [63429]
        1. Human (Homo sapiens), fibroblast [TaxId: 9606] [63431] (1) picpic
      4. Gelatinase B (MMP-9) [74703]
        1. Human (Homo sapiens) [TaxId: 9606] [74704] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk