Structural Classification of Proteins
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Superfamily: PGBD-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: PGBD-like [47089]
    core: 3 helices; bundle, closed, left-handed twist; parallel
  4. Superfamily: PGBD-like [47090]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Peptidoglycan binding domain, PGBD [47091] (2)
    1. Zn2+ DD-carboxypeptidase, N-terminal domain [47092]
      probable peptidoglycan-binding domain
      1. Streptomyces albus G [TaxId: 1962] [47093] (1)
        1. 1lbu picpicxref
          complexed with zn
          1. region a:1-83 [16416] picpiclink
    2. Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain [140390]
      1. Escherichia coli [TaxId: 562] [140391] (2)
        SQ P75820 195-275
        1. 2bgx picpicxref
          complexed with zn
          1. region a:180-260 [128504] picpiclink
        2. 2bh7 picpicxref
          automatically matched to 2BGX A:180-260
          complexed with so4, zn
          1. region a:180-260 [128516] picpiclink
  2. MMP N-terminal domain [63427] (4)
    1. Fibroblast collagenase (MMP-1) [116864]
      1. Human (Homo sapiens) [TaxId: 9606] [116865] (1)
        SQ P03956 32-466
        1. 1su3 picpicxrefxref
          complexed with ca, cl, epe, na, so4, zn
          1. region a:32-98 [112117] picpiclink
          2. region b:32-98 [112120] picpiclink
    2. Gelatinase A (MMP-2) [63428]
      1. Human (Homo sapiens) [TaxId: 9606] [63430] (3)
        1. 1eak picpicxrefxref
          complexed with ca, so4, zn; mutant
          1. region a:32-107 [70093] picpiclink
          2. region b:32-107 [70098] picpiclink
          3. region c:32-107 [70103] picpiclink
          4. region d:32-107 [70108] picpiclink
        2. 1ck7 picpicxrefxrefxref
          complexed with ca, cl, na, so4, zn; mutant
          1. region a:31-107 [58969] picpiclink
        3. 1gxd picpicxrefxrefxrefxref
          complexed with ca, so4, zn; mutant
          1. region a:1-78 [70691] picpiclink
          2. region b:2-78 [70697] picpiclink
    3. Stromelysin-1 (MMP-3) [63429]
      1. Human (Homo sapiens), fibroblast [TaxId: 9606] [63431] (1)
        1. 1slm picpicxref
          complexed with ca, zn
          1. region a:16-80 [59042] picpiclink
    4. Gelatinase B (MMP-9) [74703]
      1. Human (Homo sapiens) [TaxId: 9606] [74704] (1)
        1. 1l6j picpicxrefxref
          complexed with ca, zn
          1. region a:29-105 [73619] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk