Structural Classification of Proteins
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Fold: HMG-box

3 helices; irregular array

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: HMG-box [47094]
    3 helices; irregular array

Superfamilies:

  1. HMG-box [47095] (1)
    link to SUPERFAMILY database - Superfamily
    1. HMG-box [47096] (12)
      1. High mobility group protein 1, HMG1 [47097]
        duplication: contains HMG-box domains
        1. Rat (Rattus norvegicus) [TaxId: 10116] [47098] (4)
          1. 1ckt picpic
            domain A
            protein/DNA complex; complexed with cpt, ido
            1. chain a [16417] picpiclink
          2. 1hmf picpic
            domain B
            1. chain a [16419] picpiclink
          3. 1aab picpic
            domain A
            mutant
            1. chain a [16420] picpiclink
          4. 1hme picpic
            domain B
            1. chain a [16418] picpiclink
        2. Hamster (Cricetulus griseus) [TaxId: 10029] [47099] (5)
          1. 1hsm picpic
            domain B
            complexed with bme
            1. chain a [16421] picpiclink
          2. 1nhm picpic
            domain B
            1. chain a [16422] picpiclink
          3. 2gzk picpicxref
            automatically matched to d1hsm__
            1. region a:87-159 [135907] picpiclink
          4. 1nhn picpic
            domain B
            1. chain a [16423] picpiclink
          5. 1hsn picpic
            domain B
            complexed with bme
            1. chain a [16424] picpiclink
      2. High mobility group protein 2, HMG2 [109762]
        1. Pig (Sus scrofa) [TaxId: 9823] [109763] (3)
          SQ P17741 1-77, 89-163
          1. 1j3d picpic
            domain B
            1. chain a [103833] picpiclink
          2. 1j3x picpic
            domain A
            mutant
            1. chain a [103840] picpiclink
          3. 1j3c picpic
            domain B
            mutant
            1. chain a [103832] picpiclink
      3. HMG-D [47100]
        1. Drosophila melanogaster [TaxId: 7227] [47101] (3)
          1. 1qrv picpic
            1. chain a [16425] picpiclink
            2. chain b [16426] picpiclink
          2. 1e7j picpic
            1. chain a [59344] picpiclink
          3. 1hma picpic
            1. chain a [16427] picpiclink
      4. NHP6a [47102]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47103] (3)
          1. 1lwm picpic
            1. chain a [78274] picpiclink
          2. 1cg7 picpic
            1. chain a [16428] picpiclink
          3. 1j5n picpic
            1. chain a [77083] picpiclink
      5. SRY [47104]
        1. Human (Homo sapiens) [TaxId: 9606] [47105] (5)
          1. 1j46 picpic
            1. chain a [66372] picpiclink
          2. 1j47 picpic
            mutant
            1. chain a [66373] picpiclink
          3. 2gzk picpicxref
            automatically matched to d1hrya_
            1. region a:3-75 [135908] picpiclink
          4. 1hry picpic
            protein/DNA complex
            1. chain a [16429] picpiclink
          5. 1hrz picpic
            protein/DNA complex
            1. chain a [16430] picpiclink
      6. Sox-5 [47106]
        1. Mouse (Mus musculus) [TaxId: 10090] [47107] (1)
          1. 1i11 picpic
            1. chain a [16431] picpiclink
      7. Sox-2 [81718]
        1. Mouse (Mus musculus) [TaxId: 10090] [81719] (1)
          1. 1gt0 picpicxrefxref
            mutant
            1. chain d [76337] picpiclink
        2. Human (Homo sapiens) [TaxId: 9606] [101105] (1)
          1. 1o4x picpicxrefxref
            mutant
            1. chain b [92472] picpiclink
      8. Lymphoid enhancer-binding factor, LEF1 [47110]
        1. Mouse (Mus musculus) [TaxId: 10090] [47111] (1)
          1. 2lef picpic
            protein/DNA complex; mutant
            1. chain a [16433] picpiclink
      9. Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) [68982]
        Contains 6 HMG-box domains
        1. Human (Homo sapiens) [TaxId: 9606] [68983] (3)
          1. 1k99 picpic
            HMG box 1
            1. chain a [68341] picpiclink
          2. 1l8y picpic
            HMG box 5
            1. chain a [73708] picpiclink
          3. 1l8z picpic
            HMG box 5
            1. chain a [73709] picpiclink
        2. Mouse (Mus musculus) [TaxId: 10090] [109764] (3)
          SQ P25976 388-383, 392-470, 567-655
          1. 1v64 picpic
            Structural genomics target, HMG box 3
            1. chain a [108392] picpiclink
          2. 1v63 picpic
            Structural genomics target, HMG-box 5
            1. chain a [108391] picpiclink
          3. 1wgf picpic
            Structural genomics target; HMG-box 4
            1. chain a [114611] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk