Structural Classification of Proteins
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Superfamily: HMG-box

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: HMG-box [47094]
    3 helices; irregular array
  4. Superfamily: HMG-box [47095]
    link to SUPERFAMILY database - Superfamily

Families:

  1. HMG-box [47096] (12)
    1. High mobility group protein 1, HMG1 [47097]
      duplication: contains HMG-box domains
      1. Rat (Rattus norvegicus) [TaxId: 10116] [47098] (4)
        1. 1ckt picpic
          domain A
          protein/DNA complex; complexed with cpt, ido
          1. chain a [16417] picpiclink
        2. 1hmf picpic
          domain B
          1. chain a [16419] picpiclink
        3. 1aab picpic
          domain A
          mutant
          1. chain a [16420] picpiclink
        4. 1hme picpic
          domain B
          1. chain a [16418] picpiclink
      2. Hamster (Cricetulus griseus) [TaxId: 10029] [47099] (5)
        1. 1hsm picpic
          domain B
          complexed with bme
          1. chain a [16421] picpiclink
        2. 1nhm picpic
          domain B
          1. chain a [16422] picpiclink
        3. 2gzk picpicxref
          automatically matched to d1hsm__
          1. region a:87-159 [135907] picpiclink
        4. 1nhn picpic
          domain B
          1. chain a [16423] picpiclink
        5. 1hsn picpic
          domain B
          complexed with bme
          1. chain a [16424] picpiclink
    2. High mobility group protein 2, HMG2 [109762]
      1. Pig (Sus scrofa) [TaxId: 9823] [109763] (3)
        SQ P17741 1-77, 89-163
        1. 1j3d picpic
          domain B
          1. chain a [103833] picpiclink
        2. 1j3x picpic
          domain A
          mutant
          1. chain a [103840] picpiclink
        3. 1j3c picpic
          domain B
          mutant
          1. chain a [103832] picpiclink
    3. HMG-D [47100]
      1. Drosophila melanogaster [TaxId: 7227] [47101] (3)
        1. 1qrv picpic
          1. chain a [16425] picpiclink
          2. chain b [16426] picpiclink
        2. 1e7j picpic
          1. chain a [59344] picpiclink
        3. 1hma picpic
          1. chain a [16427] picpiclink
    4. NHP6a [47102]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47103] (3)
        1. 1lwm picpic
          1. chain a [78274] picpiclink
        2. 1cg7 picpic
          1. chain a [16428] picpiclink
        3. 1j5n picpic
          1. chain a [77083] picpiclink
    5. SRY [47104]
      1. Human (Homo sapiens) [TaxId: 9606] [47105] (5)
        1. 1j46 picpic
          1. chain a [66372] picpiclink
        2. 1j47 picpic
          mutant
          1. chain a [66373] picpiclink
        3. 2gzk picpicxref
          automatically matched to d1hrya_
          1. region a:3-75 [135908] picpiclink
        4. 1hry picpic
          protein/DNA complex
          1. chain a [16429] picpiclink
        5. 1hrz picpic
          protein/DNA complex
          1. chain a [16430] picpiclink
    6. Sox-5 [47106]
      1. Mouse (Mus musculus) [TaxId: 10090] [47107] (1)
        1. 1i11 picpic
          1. chain a [16431] picpiclink
    7. Sox-2 [81718]
      1. Mouse (Mus musculus) [TaxId: 10090] [81719] (1)
        1. 1gt0 picpicxrefxref
          mutant
          1. chain d [76337] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [101105] (1)
        1. 1o4x picpicxrefxref
          mutant
          1. chain b [92472] picpiclink
    8. Lymphoid enhancer-binding factor, LEF1 [47110]
      1. Mouse (Mus musculus) [TaxId: 10090] [47111] (1)
        1. 2lef picpic
          protein/DNA complex; mutant
          1. chain a [16433] picpiclink
    9. Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) [68982]
      Contains 6 HMG-box domains
      1. Human (Homo sapiens) [TaxId: 9606] [68983] (3)
        1. 1k99 picpic
          HMG box 1
          1. chain a [68341] picpiclink
        2. 1l8y picpic
          HMG box 5
          1. chain a [73708] picpiclink
        3. 1l8z picpic
          HMG box 5
          1. chain a [73709] picpiclink
      2. Mouse (Mus musculus) [TaxId: 10090] [109764] (3)
        SQ P25976 388-383, 392-470, 567-655
        1. 1v64 picpic
          Structural genomics target, HMG box 3
          1. chain a [108392] picpiclink
        2. 1v63 picpic
          Structural genomics target, HMG-box 5
          1. chain a [108391] picpiclink
        3. 1wgf picpic
          Structural genomics target; HMG-box 4
          1. chain a [114611] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk