Structural Classification of Proteins
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Family: HMG-box

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: HMG-box [47094]
    3 helices; irregular array
  4. Superfamily: HMG-box [47095]
    link to SUPERFAMILY database - Superfamily
  5. Family: HMG-box [47096]

Protein Domains:

  1. High mobility group protein 1, HMG1 [47097]
    duplication: contains HMG-box domains
    1. Rat (Rattus norvegicus) [TaxId: 10116] [47098] (4)
      1. 1ckt picpic
        domain A
        protein/DNA complex; complexed with cpt, ido
        1. chain a [16417] picpiclink
      2. 1hmf picpic
        domain B
        1. chain a [16419] picpiclink
      3. 1aab picpic
        domain A
        mutant
        1. chain a [16420] picpiclink
      4. 1hme picpic
        domain B
        1. chain a [16418] picpiclink
    2. Hamster (Cricetulus griseus) [TaxId: 10029] [47099] (5)
      1. 1hsm picpic
        domain B
        complexed with bme
        1. chain a [16421] picpiclink
      2. 1nhm picpic
        domain B
        1. chain a [16422] picpiclink
      3. 2gzk picpicxref
        automatically matched to d1hsm__
        1. region a:87-159 [135907] picpiclink
      4. 1nhn picpic
        domain B
        1. chain a [16423] picpiclink
      5. 1hsn picpic
        domain B
        complexed with bme
        1. chain a [16424] picpiclink
  2. High mobility group protein 2, HMG2 [109762]
    1. Pig (Sus scrofa) [TaxId: 9823] [109763] (3)
      SQ P17741 1-77, 89-163
      1. 1j3d picpic
        domain B
        1. chain a [103833] picpiclink
      2. 1j3x picpic
        domain A
        mutant
        1. chain a [103840] picpiclink
      3. 1j3c picpic
        domain B
        mutant
        1. chain a [103832] picpiclink
  3. HMG-D [47100]
    1. Drosophila melanogaster [TaxId: 7227] [47101] (3)
      1. 1qrv picpic
        1. chain a [16425] picpiclink
        2. chain b [16426] picpiclink
      2. 1e7j picpic
        1. chain a [59344] picpiclink
      3. 1hma picpic
        1. chain a [16427] picpiclink
  4. NHP6a [47102]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47103] (3)
      1. 1lwm picpic
        1. chain a [78274] picpiclink
      2. 1cg7 picpic
        1. chain a [16428] picpiclink
      3. 1j5n picpic
        1. chain a [77083] picpiclink
  5. SRY [47104]
    1. Human (Homo sapiens) [TaxId: 9606] [47105] (5)
      1. 1j46 picpic
        1. chain a [66372] picpiclink
      2. 1j47 picpic
        mutant
        1. chain a [66373] picpiclink
      3. 2gzk picpicxref
        automatically matched to d1hrya_
        1. region a:3-75 [135908] picpiclink
      4. 1hry picpic
        protein/DNA complex
        1. chain a [16429] picpiclink
      5. 1hrz picpic
        protein/DNA complex
        1. chain a [16430] picpiclink
  6. Sox-5 [47106]
    1. Mouse (Mus musculus) [TaxId: 10090] [47107] (1)
      1. 1i11 picpic
        1. chain a [16431] picpiclink
  7. Sox-2 [81718]
    1. Mouse (Mus musculus) [TaxId: 10090] [81719] (1)
      1. 1gt0 picpicxrefxref
        mutant
        1. chain d [76337] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [101105] (1)
      1. 1o4x picpicxrefxref
        mutant
        1. chain b [92472] picpiclink
  8. Lymphoid enhancer-binding factor, LEF1 [47110]
    1. Mouse (Mus musculus) [TaxId: 10090] [47111] (1)
      1. 2lef picpic
        protein/DNA complex; mutant
        1. chain a [16433] picpiclink
  9. Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) [68982]
    Contains 6 HMG-box domains
    1. Human (Homo sapiens) [TaxId: 9606] [68983] (3)
      1. 1k99 picpic
        HMG box 1
        1. chain a [68341] picpiclink
      2. 1l8y picpic
        HMG box 5
        1. chain a [73708] picpiclink
      3. 1l8z picpic
        HMG box 5
        1. chain a [73709] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [109764] (3)
      SQ P25976 388-383, 392-470, 567-655
      1. 1v64 picpic
        Structural genomics target, HMG box 3
        1. chain a [108392] picpiclink
      2. 1v63 picpic
        Structural genomics target, HMG-box 5
        1. chain a [108391] picpiclink
      3. 1wgf picpic
        Structural genomics target; HMG-box 4
        1. chain a [114611] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk