Family: Domain of the SRP/SRP receptor G-proteins

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: Four-helical up-and-down bundle [47161]
   core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down
4. Superfamily: Domain of the SRP/SRP receptor G-proteins [47364]
   uperfamily
5. Family: Domain of the SRP/SRP receptor G-proteins [47365]

Protein Domains:

1. Signal sequence recognition protein Ffh [47366]
   1. Thermus aquaticus [TaxId: 271] [47367] (25)
      1. 1ls1
         complexed with mo5, oxy
         1. region a:1-88 [78170]
      2. 2j45
         automatically matched to d2ffha1
         complexed with ca, edo, mes, mrd, na
         1. region a:1-88 [137983]
      3. 2j45
         automatically matched to d2ffha1
         complexed with ca, edo, mes, mrd, na
         1. region b:1-88 [137985]
      4. 2j46
         automatically matched to d2ffha1
         complexed with act, cl, mn, mrd
         1. region a:1-88 [137987]
      5. 2j46
         automatically matched to d2ffha1
         complexed with act, cl, mn, mrd
         1. region b:1-88 [137989]
      6. 2c04
         automatically matched to d2ffha1
         complexed with ca, gcp
         1. region a:1-88 [129570]
      7. 2c04
         automatically matched to d2ffha1
         complexed with ca, gcp
         1. region b:1-88 [129572]
      8. 2c03
         automatically matched to d2ffha1
         complexed with dio, edo, gdp
         1. region a:1-88 [129566]
      9. 2c03
         automatically matched to d2ffha1
         complexed with dio, edo, gdp
         1. region b:1-88 [129568]
      10. 1okk
          complexed with bzp, edo, gcp, mo3, so4
          1. region a:4-88 [93259]
      11. 1rj9
          complexed with gcp, mg
          1. region b:14-88 [97555]
      12. 1ffh
          complexed with mo5
          1. region a:2-88 [16960]
      13. 2j7p
          automatically matched to d2ffha1
          complexed with edo, gnp, iod, k, mg
          1. region a:3-88 [138119]
      14. 2j7p
          automatically matched to d2ffha1
          complexed with edo, gnp, iod, k, mg
          1. region b:4-88 [138121]
      15. 1jpn
          complexed with acy, gnp, oc3, oc4
          1. region a:1-88 [67039]
          2. region b:1-88 [67041]
      16. 1ng1
          complexed with acy, cd, edo, gdp, mo4, mo6
          1. region a:1-88 [16961]
      17. 1o87
          complexed with cl, fmt, gdp, mo4, mo5
          1. region a:1-88 [92640]
          2. region b:1-88 [92642]
      18. 2ng1
          complexed with dox, edo, gdp; mutant
          1. region a:2-88 [16962]
      19. 3ng1
          complexed with cd, edo, so4
          1. region a:1-88 [16963]
          2. region b:1-88 [16964]
      20. 2cnw
          automatically matched to d2ffha1
          complexed with 5gp, alf, gdp, mg
          1. region a:4-88 [130649]
      21. 2cnw
          automatically matched to d2ffha1
          complexed with 5gp, alf, gdp, mg
          1. region b:4-88 [130651]
      22. 2cnw
          automatically matched to d2ffha1
          complexed with 5gp, alf, gdp, mg
          1. region c:4-88 [130653]
      23. 1jpj
          complexed with gnp
          1. region a:1-88 [67024]
      24. 2ffh
          complexed with cd, so4; mutant
          1. region a:1-88 [16965]
          2. region b:1-88 [16966]
          3. region c:1-88 [16967]
      25. 2iy3
          automatically matched to d2ffha1
          1. region a:1-88 [137790]
   2. Archaeon Acidianus ambivalens [TaxId: 2283] [63538] (2)
      1. 1j8y
         mutant
         1. region f:3-86 [62747]
      2. 1j8m
         1. region f:3-86 [62742]
   3. Archaeon Sulfolobus solfataricus [TaxId: 2287] [101121] (2)
      1. 1qzx
         1. region a:1-87 [96711]
         2. region b:1-87 [96714]
      2. 1qzw
         complexed with ccc, gtp
         1. region a:1-87 [96699]
         2. region c:1-87 [96702]
         3. region e:1-87 [96705]
         4. region g:1-87 [96708]
2. Signal recognition particle receptor, FtsY [47368]
   1. Escherichia coli [TaxId: 562] [47369] (2)
      1. 2qy9
         automatically matched to d1ftsa1
         1. region a:201-284 [151469]
      2. 1fts
         1. region a:201-284 [16968]
   2. Thermus aquaticus [TaxId: 271] [101122] (8)
      1. 1okk
         complexed with bzp, edo, gcp, mo3, so4
         1. region d:21-78 [93261]
      2. 1rj9
         complexed with gcp, mg
         1. region a:27-95 [97553]
      3. 2j7p
         automatically matched to d1okkd1
         complexed with edo, gnp, iod, k, mg
         1. region d:22-78 [138123]
      4. 2j7p
         automatically matched to d1okkd1
         complexed with edo, gnp, iod, k, mg
         1. region e:27-78 [138125]
      5. 2iyl
         automatically matched to d1okkd1
         complexed with gdp, so4
         1. region d:21-78 [137801]
      6. 2cnw
         automatically matched to d1okkd1
         complexed with 5gp, alf, gdp, mg
         1. region d:21-78 [130655]
      7. 2cnw
         automatically matched to d1okkd1
         complexed with 5gp, alf, gdp, mg
         1. region e:23-78 [130657]
      8. 2cnw
         automatically matched to d1okkd1
         complexed with 5gp, alf, gdp, mg
         1. region f:26-78 [130659]
   3. Thermotoga maritima [TaxId: 2336] [109766] (1)
      SQ Q9WZ40
      1. 1vma
         Structural genomics target
         complexed with cit, mg
         1. region a:1-81 [108887]
         2. region b:1-81 [108889]
3. Signal recognition particle 54 kDa protein, SRP54 [116874]
   1. Mouse (Mus musculus) [TaxId: 10090] [116875] (1)
      SQ P14576 4-85
      1. 1wgw
         Structural genomics target
         1. chain a [114625]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk