Structural Classification of Proteins
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Superfamily: Nucleotidyltransferase substrate binding subunit/domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Four-helical up-and-down bundle [47161]
    core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down
  4. Superfamily: Nucleotidyltransferase substrate binding subunit/domain [81593]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Family 1 bi-partite nucleotidyltransferase subunit [81740] (2)
    1. Hypothetical protein HI0074 [81741]
      function unknown; form complex with putative catalytic subunit HI0073 (see 1no5)
      1. Haemophilus influenzae [TaxId: 727] [81742] (1)
        1. 1jog picpic
          structural genomics
          complexed with mse
          1. chain a [77142] picpiclink
          2. chain b [77143] picpiclink
          3. chain c [77144] picpiclink
          4. chain d [77145] picpiclink
    2. Probable nucleotidyltransferase subunit TTHA0048 [116876]
      1. Thermus thermophilus [TaxId: 274] [116877] (5)
        SQ Q5SM95
        Structural genomics target
        1. 1wty picpic
          Structural genomics target
          1. chain a [114880] picpiclink
          2. chain b [114881] picpiclink
          3. chain c [114882] picpiclink
          4. chain d [114883] picpiclink
        2. 2ywa picpic
          automatically matched to d1wtya_
          1. region a:2-116 [153807] picpiclink
        3. 2ywa picpic
          automatically matched to d1wtya_
          1. region b:2-116 [153808] picpiclink
        4. 2ywa picpic
          automatically matched to d1wtya_
          1. region c:3-116 [153809] picpiclink
        5. 2ywa picpic
          automatically matched to d1wtya_
          1. region d:2-116 [153810] picpiclink
  2. HEPN domain [89022] (2)
    1. Hypothetical protein TM0613 [89023]
      Family 5 probable bi-partite nucleotidyltransferase subunit; predicted partner is putative catalytic subunit TM0614
      1. Thermotoga maritima [TaxId: 2336] [89024] (1)
        1. 1o3u picpic
          structural genomics
          complexed with mse
          1. chain a [86615] picpiclink
    2. Hypothetical protein TT1696 [101123]
      1. Thermus thermophilus [TaxId: 274] [101124] (1)
        1. 1ufb picpic
          structural genomics; dimeric structure is more similar to that of HI0074 (1jog) than more closely related TM0613 (1ou3)
          1. chain a [99331] picpiclink
          2. chain b [99332] picpiclink
          3. chain c [99333] picpiclink
          4. chain d [99334] picpiclink
  3. Kanamycin nucleotidyltransferase (KNTase), C-terminal domain [81592] (1)
    N-terminal catalytic domain is followed by an all-alpha domain
    1. Kanamycin nucleotidyltransferase (KNTase), C-terminal domain [81591]
      1. Staphylococcus aureus [TaxId: 1280] [81590] (2)
        1. 1kny picpicxref
          complexed with apc, kan, mg; mutant
          1. region a:126-253 [75896] picpiclink
          2. region b:126-253 [75898] picpiclink
        2. 1kan picpicxref
          CA-atoms only, mutant protein sequence
          1. region a:126-253 [75878] picpiclink
          2. region b:126-253 [75880] picpiclink
  4. Glutamine synthase adenylyltransferase GlnE, domain 2 [109767] (1)
    1. Glutamine synthase adenylyltransferase GlnE, domain 2 [109768]
      1. Escherichia coli [TaxId: 562] [109769] (1)
        SQ P30870 1-437
        1. 1v4a picpicxref
          1. region a:287-437 [108350] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk