Structural Classification of Proteins
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Fold: LEM/SAP HeH motif

helix-extended loop-helix; parallel helices

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: LEM/SAP HeH motif [63450]
    helix-extended loop-helix; parallel helices

Superfamilies:

  1. LEM domain [63451] (1)
    link to SUPERFAMILY database - Superfamily
    1. LEM domain [63452] (2)
      1. Thymopoietin, LAP2 [63453]
        1. Human (Homo sapiens) [TaxId: 9606] [63454] (3)
          1. 1gjj picpic
            the two domain structures are superimposed on each other
            1. region a:1-50 [83291] picpiclink
            2. region a:111-153 [83292] picpiclink
          2. 1h9e picpic
            LEM-like domain; res. 2-57
            1. chain a [60825] picpiclink
          3. 1h9f picpic
            LEM domain; res. 103-159
            1. chain a [60826] picpiclink
      2. Inner nuclear membrane protein emerin [63455]
        1. Human (Homo sapiens) [TaxId: 9606] [63456] (3)
          1. 2odg picpicxrefxref
            automatically matched to d1jeia_
            1. region c:2-47 [139029] picpiclink
          2. 2odc picpic
            automatically matched to d1jeia_
            1. region i:2-47 [139026] picpiclink
          3. 1jei picpic
            1. chain a [62918] picpiclink
  2. SAP domain [68906] (1)
    link to SUPERFAMILY database - Superfamily
    1. SAP domain [68907] (7)
      Pfam 02037
      1. DNA binding C-terminal domain of ku70 [68908]
        1. Human (Homo sapiens) [TaxId: 9606] [68909] (2)
          1. 1jeq picpicxrefxrefxrefxref
            1. region a:559-609 [64748] picpiclink
          2. 1jjr picpic
            1. chain a [66772] picpiclink
      2. Mitochondrial resolvase ydc2 N-terminal domain [68945]
        1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [68946] (1)
          1. 1kcf picpicxref
            complexed with so4
            1. region a:3-38 [68434] picpiclink
            2. region b:5-38 [68436] picpiclink
      3. S/mar DNA-binding protein Tho1 [74667]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [74668] (1)
          1. 1h1j picpic
            1. chain s [70850] picpiclink
      4. p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 [116764]
        1. Human (Homo sapiens) [TaxId: 9606] [116765] (1)
          SQ O75925 1-65
          1. 1v66 picpic
            1. chain a [113543] picpiclink
      5. Rififylin (FYVE-RING finger protein Sakura) [116766]
        1. Human (Homo sapiens) [TaxId: 9606] [116767] (1)
          SQ Q8WZ73 45-139
          1. 1y02 picpicxref
            complexed with zn
            1. region a:71-114 [116278] picpiclink
      6. Nuclear protein hcc-1 [140137]
        1. Human (Homo sapiens) [TaxId: 9606] [140138] (1)
          SQ P82979 5-46
          1. 2do1 picpic
            1. region a:5-46 [131595] picpiclink
      7. Heterogeneous nuclear ribonucleoprotein U-like protein 1 [140139]
        1. Human (Homo sapiens) [TaxId: 9606] [140140] (1)
          SQ Q9BUJ2 1-37
          1. 1zrj picpic
            1. region a:1-37 [125548] picpiclink
  3. Rho N-terminal domain-like [68912] (2)
    link to SUPERFAMILY database - Superfamily
    1. Rho termination factor, N-terminal domain [68913] (1)
      1. Rho termination factor, N-terminal domain [68914]
        1. Escherichia coli [TaxId: 562] [50295] (14)
          SQ P03002
          1. 1a62 picpicxref
            1. region a:1-47 [64708] picpiclink
          2. 1a8v picpicxref
            complexed with cu
            1. region a:-1-47 [64712] picpiclink
            2. region b:-1-47 [64714] picpiclink
          3. 2a8v picpicxref
            protein/RNA complex
            1. region a:1-47 [64752] picpiclink
            2. region b:1-47 [64754] picpiclink
            3. region c:1-47 [64756] picpiclink
          4. 1xpu picpicxrefxref
            complexed with ags, fpd, mg
            1. region a:1-47 [115790] picpiclink
            2. region b:1-47 [115793] picpiclink
            3. region c:1-47 [115796] picpiclink
            4. region d:1-47 [115799] picpiclink
            5. region e:1-47 [115802] picpiclink
            6. region f:1-47 [115805] picpiclink
          5. 1xpr picpicxrefxref
            complexed with ags, fb, mg
            1. region a:1-47 [115772] picpiclink
            2. region b:1-47 [115775] picpiclink
            3. region c:1-47 [115778] picpiclink
            4. region d:1-47 [115781] picpiclink
            5. region e:1-47 [115784] picpiclink
            6. region f:1-47 [115787] picpiclink
          6. 1pvo picpicxrefxref
            complexed with anp
            1. region a:1-47 [88316] picpiclink
            2. region c:1-47 [88321] picpiclink
            3. region d:1-47 [88324] picpiclink
            4. region e:1-47 [88327] picpiclink
            5. region f:1-47 [88330] picpiclink
          7. 1pv4 picpicxrefxref
            complexed with mse
            1. region a:1-47 [88295] picpiclink
            2. region c:1-47 [88300] picpiclink
            3. region d:1-47 [88303] picpiclink
            4. region e:1-47 [88306] picpiclink
            5. region f:1-47 [88309] picpiclink
          8. 1xpo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a8va1
            complexed with ags, bcm, mg
            1. region a:1-47 [122212] picpiclink
          9. 1xpo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a8va1
            complexed with ags, bcm, mg
            1. region b:1-47 [122215] picpiclink
          10. 1xpo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a8va1
            complexed with ags, bcm, mg
            1. region c:1-47 [122218] picpiclink
          11. 1xpo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a8va1
            complexed with ags, bcm, mg
            1. region d:1-47 [122221] picpiclink
          12. 1xpo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a8va1
            complexed with ags, bcm, mg
            1. region e:1-47 [122224] picpiclink
          13. 1xpo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a8va1
            complexed with ags, bcm, mg
            1. region f:1-47 [122227] picpiclink
          14. 1a63 picpicxref
            1. region a:1-47 [64710] picpiclink
    2. YqbF C-terminal domain-like [158225] (2)
      1. Hypothetical protein YqbF [158226]
        1. Bacillus subtilis [TaxId: 1423] [158227] (1)
          SQ P45922 50-103
          1. 2hjq picpicxref
            1. region a:50-103 [147296] picpiclink
      2. Uncharacterized protein HI1507 in Mu-like prophage FluMu region [158228]
        1. Haemophilus influenzae [TaxId: 727] [158229] (1)
          SQ P44229 1-38
          1. 2out picpicxref
            1. region a:94-131 [149027] picpiclink
  4. Recombination endonuclease VII, C-terminal and dimerization domains [68918] (1)
    link to SUPERFAMILY database - Superfamily
    1. Recombination endonuclease VII, C-terminal and dimerization domains [68919] (1)
      1. Recombination endonuclease VII, C-terminal and dimerization domains [68920]
        1. Bacteriophage T4 [TaxId: 10665] [54074] (7)
          1. 1e7l picpicxref
            complexed with so4, zn; mutant
            1. region a:104-157 [64728] picpiclink
            2. region b:104-157 [64730] picpiclink
          2. 1en7 picpicxref
            1. region a:104-157 [64733] picpiclink
            2. region b:104-157 [64735] picpiclink
          3. 2qnf picpicxrefxref
            automatically matched to d1e7da1
            complexed with zn; mutant
            1. region a:104-157 [150923] picpiclink
          4. 2qnf picpicxrefxref
            automatically matched to d1e7da1
            complexed with zn; mutant
            1. region b:104-157 [150925] picpiclink
          5. 1e7d picpicxref
            complexed with ca, cl, zn
            1. region a:104-157 [64724] picpiclink
            2. region b:104-157 [64726] picpiclink
          6. 2qnc picpicxrefxref
            automatically matched to d1e7da1
            complexed with edo, mg, zn; mutant
            1. region a:104-157 [150919] picpiclink
          7. 2qnc picpicxrefxref
            automatically matched to d1e7da1
            complexed with edo, mg, zn; mutant
            1. region b:104-157 [150921] picpiclink
  5. DNA-binding domain of EIN3-like [116768] (1)
    decorated with additional structures
    link to SUPERFAMILY database - Superfamily
    1. DNA-binding domain of EIN3-like [116769] (1)
      middle part of Pfam 04873
      1. Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 [116770]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116771] (1)
          SQ O23116 162-288
          1. 1wij picpic
            Structural genomics target
            1. chain a [114674] picpiclink
  6. PRP4-like [158230] (1)
    1. PRP4-like [158231] (1)
      Pfam 08799; pre-mRNA processing factor 4 (PRP4) like
      1. Pre-mRNA-splicing factor 18 [158232]
        1. Human (Homo sapiens) [TaxId: 9606] [158233] (1)
          SQ Q99633 60-122
          1. 2dk4 picpic
            1. region a:8-70 [146533] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk