Structural Classification of Proteins

Fold: Bromodomain-like

: 4 helices; bundle; minor mirror variant of up-and-down topology

Lineage:

Root: scop
Class: All alpha proteins [46456]
Fold: Bromodomain-like [47363]
4 helices; bundle; minor mirror variant of up-and-down topology

Superfamilies:

Bromodomain [47370] (1)
uperfamily
1. Bromodomain [47371] (5)
  1. GCN5 [47372]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47373] (1)
    2. Human (Homo sapiens) [TaxId: 9606] [47374] (3)
  2. P300/CAF histone acetyltransferase bromodomain [47375]
    1. Human (Homo sapiens) [TaxId: 9606] [47376] (7)
  3. TAFII250 double bromodomain module [47377]
    1. Human (Homo sapiens) [TaxId: 9606] [47378] (1)
  4. CREB-binding protein, CBP [74712]
    1. Human (Homo sapiens) [TaxId: 9606] [74713] (5)
alpha-ketoacid dehydrogenase kinase, N-terminal domain [69012] (1)
uperfamily
1. alpha-ketoacid dehydrogenase kinase, N-terminal domain [69013] (3)
  1. Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) [69014]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [69015] (3)
  2. Pyruvate dehydrogenase kinase [69016]
    1. Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116] [69017] (1)
    2. Human (Homo sapiens) [TaxId: 9606] [158429] (8)
      SQ Q15120 13-176
Acyl-CoA dehydrogenase C-terminal domain-like [47203] (2)
multidomain flavoprotein; N-terminal domain is all-alpha; the middle domain is open (5,8) barrel
uperfamily
1. Medium chain acyl-CoA dehydrogenase-like, C-terminal domain [47204] (12)
  1. Butyryl-CoA dehydrogenase, C-domain [47205]
    1. Megasphaera elsdenii [TaxId: 907] [47206] (1)
    2. Rat (Rattus norvegicus) [TaxId: 10116] [69018] (1)
  2. Medium chain acyl-CoA dehydrogenase, C-domain [47207]
    1. Pig (Sus scrofa) [TaxId: 9823] [47208] (3)
    2. Human (Homo sapiens) [TaxId: 9606] [47209] (8)
      SQ P11310 34-421
    3. Thermus thermophilus [TaxId: 274] [116882] (1)
      SQ Q5SJ70 32-409
  3. Isovaleryl-CoA dehydrogenase, C-domain [47210]
    1. Human (Homo sapiens) [TaxId: 9606] [47211] (1)
  4. Isobutyryl-CoA dehydrogenase [101144]
    1. Human (Homo sapiens) [TaxId: 9606] [101145] (1)
  5. Protein FkbI [101146]
    involved in biosynthesis of methoxymalonyl extender unit of fk520 polyketide immunosuppressant
    1. Streptomyces hygroscopicus [TaxId: 1912] [101147] (1)
  6. Glutaryl-CoA dehydrogenase GCDH [109794]
    1. Human (Homo sapiens) [TaxId: 9606] [109795] (4)
      SQ Q92947
  7. 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain [116883]
    1. Clostridium aminobutyricum [TaxId: 33953] [116884] (1)
      SQ P55792
  8. Nitroalkane oxidase [140471]
    1. Fusarium oxysporum [TaxId: 5507] [140472] (18)
      SQ Q8X1D8 261-430
  9. Acyl-CoA dehydrogenase [140473]
    1. Thermus thermophilus [TaxId: 274] [140474] (8)
      SQ Q5SGZ2 235-387
2. acyl-CoA oxidase C-terminal domains [74714] (2)
  duplication: tandem repeat of this fold
  1. Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 [74715]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [74716] (3)
  2. Acyl-coenzyme A oxidase 1, domains 3 and 4 [116885]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116886] (1)
      SQ O65202
Plant invertase/pectin methylesterase inhibitor [101148] (1)
contains a short alpha-hairpin at the N-terminal extension
uperfamily
1. Plant invertase/pectin methylesterase inhibitor [101149] (2)
  Pfam 04043
  1. Invertase inhibitor [101150]
    1. Common tobacco (Nicotiana tabacum) [TaxId: 4097] [101151] (9)
  2. Pectin methylesterase inhibitor 1, PMEI1 [116887]
    forms dimers and trimers by swapping the extra N-terminal hairpins
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116888] (3)
      SQ Q9LNF2 28-176
Mob1/phocein [101152] (1)
common fold is elaborated with additional short helices; contains a zinc-binding site
uperfamily
1. Mob1/phocein [101153] (2)
  1. Mob1a [101154]
    1. Human (Homo sapiens) [TaxId: 9606] [101155] (1)
    2. African clawed frog (Xenopus laevis) [TaxId: 8355] [109796] (1)
      SQ Q7T1M9 33-215
Bacteriocin immunity protein-like [109797] (2)
uperfamily
1. Carnobacteriocin B2 immunity protein [109798] (1)
  1. Carnobacteriocin B2 immunity protein [109799]
    1. Carnobacterium piscicola [TaxId: 2751] [109800] (1)
      SQ P38582
2. EntA-Im [140475] (1)
  1. Enterocine A immunity protein, EntA-Im [140476]
    1. Enterococcus faecium [TaxId: 1352] [140477] (3)
      SQ Q47785 3-82
LemA-like [140478] (1)
helices 2 and 3 are shorther than helices 1 and 4
uperfamily
1. LemA-like [140479] (1)
  Pfam 04011
  1. Hypothetical protein TM0961 [140480]
    1. Thermotoga maritima [TaxId: 2336] [140481] (1)
      SQ Q9X056 35-183
MAST3 pre-PK domain-like [140482] (1)
this domain precedes the Protein Kinase domain in Microtubule-associated serine/threonine-protein kinase 3 (MAST3)
uperfamily
1. MAST3 pre-PK domain-like [140483] (1)
  1. Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) [140484]
    1. Human (Homo sapiens) [TaxId: 9606] [140485] (1)
      SQ O60307 181-281
PA2201 N-terminal domain-like [140486] (1)
uperfamily
1. PA2201 N-terminal domain-like [140487] (1)
  trimerisation domain
  1. Hypothetical protein PA2201 [140488]
    1. Pseudomonas aeruginosa [TaxId: 287] [140489] (3)
      SQ Q9I1R6 6-129
Nqo1C-terminal domain-like [140490] (1)
contains extra C-terminal helix that caps the bundle at one end and Fe4-S4 cluster at the other end
uperfamily
1. Nqo1C-terminal domain-like [140491] (1)
  PfamB 000336; sequence similarity to the Fe4-S4 ferredoxins in the cluser-binding site
  1. NADH-quinone oxidoreductase chain 1, Nqo1 [140492]
    1. Thermus thermophilus [TaxId: 274] [140493] (4)
      SQ Q56222 334-438
Bacillus cereus metalloprotein-like [158430] (1)
Duplication: tandem repeat of two domains of this fold with similar sequences; binds a dimetal ion cluster between the repeats
1. Bacillus cereus metalloprotein-like [158431] (2)
  1. Uncharacterized protein BCE_G9241_1042 [158432]
    1. Bacillus cereus [TaxId: 1396] [158433] (12)
      SQ Q4MW04 11-144! SQ Q4MW04 145-274
  2. Uncharacterized protein BCE_G9241_0798 [158434]
    1. Bacillus cereus [TaxId: 1396] [158435] (40)
      SQ Q4MWP8 125-259! SQ Q4MWP8 4-124
Ta0600-like [158436] (1)
1. Ta0600-like [158437] (2)
  Pfam 03685; UPF0147
  1. Uncharacterized protein MMP1188 [158438]
    1. Methanococcus maripaludis [TaxId: 39152] [158439] (4)
      SQ Q6LY05 4-91
  2. Uncharacterized protein Ta0600 [158440]
    1. Thermoplasma acidophilum [TaxId: 2303] [158441] (1)
      SQ Q9HKJ8 2-86
DsbB-like [158442] (1)
contains an extra helix in a long loop between helices 3 and 4
1. DsbB-like [158443] (1)
  Pfam 02600
  1. Disulfide bond formation protein DsbB [158444]
    1. Escherichia coli [TaxId: 562] [158445] (1)
      SQ P0A6M2 14-162
IVS-encoded protein-like [158446] (1)
IVS: Intervening sequence with conserved ORF in eubacterial 23S rRNA genes; forms a homopentamer with a toroid-shaped structure containing a tapered central channel
1. IVS-encoded protein-like [158447] (2)
  Pfam 05635
  1. Uncharacterized protein XCC0516 [158448]
    1. Xanthomonas campestris pv. campestris [TaxId: 340] [158449] (5)
      SQ Q8PD29 9-125
  2. Uncharacterized protein BT0352 [158450]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [158451] (5)
      SQ Q8AAW0 1-115
YqcC-like [158452] (1)
1. YqcC-like [158453] (1)
  Pfam 04287; DUF446
  1. Hypothetical protein YqcC [158454]
    1. Escherichia coli [TaxId: 562] [158455] (1)
      SQ Q46919 1-109