Structural Classification of Proteins
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Fold: Bromodomain-like

4 helices; bundle; minor mirror variant of up-and-down topology

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Bromodomain-like [47363]
    4 helices; bundle; minor mirror variant of up-and-down topology

Superfamilies:

  1. Bromodomain [47370] (1)
    link to SUPERFAMILY database - Superfamily
    1. Bromodomain [47371] (5) picpic
  2. alpha-ketoacid dehydrogenase kinase, N-terminal domain [69012] (1)
    link to SUPERFAMILY database - Superfamily
    1. alpha-ketoacid dehydrogenase kinase, N-terminal domain [69013] (3) picpic
  3. Acyl-CoA dehydrogenase C-terminal domain-like [47203] (2)
    multidomain flavoprotein; N-terminal domain is all-alpha; the middle domain is open (5,8) barrel
    link to SUPERFAMILY database - Superfamily
    1. Medium chain acyl-CoA dehydrogenase-like, C-terminal domain [47204] (12) picpic
    2. acyl-CoA oxidase C-terminal domains [74714] (2) picpic
      duplication: tandem repeat of this fold
  4. Plant invertase/pectin methylesterase inhibitor [101148] (1)
    contains a short alpha-hairpin at the N-terminal extension
    link to SUPERFAMILY database - Superfamily
    1. Plant invertase/pectin methylesterase inhibitor [101149] (2) picpic
      Pfam 04043
  5. Mob1/phocein [101152] (1)
    common fold is elaborated with additional short helices; contains a zinc-binding site
    link to SUPERFAMILY database - Superfamily
    1. Mob1/phocein [101153] (2) picpic
  6. Bacteriocin immunity protein-like [109797] (2)
    link to SUPERFAMILY database - Superfamily
    1. Carnobacteriocin B2 immunity protein [109798] (1) picpic
    2. EntA-Im [140475] (1) picpic
  7. LemA-like [140478] (1)
    helices 2 and 3 are shorther than helices 1 and 4
    link to SUPERFAMILY database - Superfamily
    1. LemA-like [140479] (1) picpic
      Pfam 04011
  8. MAST3 pre-PK domain-like [140482] (1)
    this domain precedes the Protein Kinase domain in Microtubule-associated serine/threonine-protein kinase 3 (MAST3)
    link to SUPERFAMILY database - Superfamily
    1. MAST3 pre-PK domain-like [140483] (1) picpic
  9. PA2201 N-terminal domain-like [140486] (1)
    link to SUPERFAMILY database - Superfamily
    1. PA2201 N-terminal domain-like [140487] (1) picpic
      trimerisation domain
  10. Nqo1C-terminal domain-like [140490] (1)
    contains extra C-terminal helix that caps the bundle at one end and Fe4-S4 cluster at the other end
    link to SUPERFAMILY database - Superfamily
    1. Nqo1C-terminal domain-like [140491] (1) picpic
      PfamB 000336; sequence similarity to the Fe4-S4 ferredoxins in the cluser-binding site
  11. Bacillus cereus metalloprotein-like [158430] (1)
    Duplication: tandem repeat of two domains of this fold with similar sequences; binds a dimetal ion cluster between the repeats
    1. Bacillus cereus metalloprotein-like [158431] (2) picpic
  12. Ta0600-like [158436] (1)
    1. Ta0600-like [158437] (2) picpic
      Pfam 03685; UPF0147
  13. DsbB-like [158442] (1)
    contains an extra helix in a long loop between helices 3 and 4
    1. DsbB-like [158443] (1) picpic
      Pfam 02600
  14. IVS-encoded protein-like [158446] (1)
    IVS: Intervening sequence with conserved ORF in eubacterial 23S rRNA genes; forms a homopentamer with a toroid-shaped structure containing a tapered central channel
    1. IVS-encoded protein-like [158447] (2) picpic
      Pfam 05635
  15. YqcC-like [158452] (1)
    1. YqcC-like [158453] (1) picpic
      Pfam 04287; DUF446
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk