Structural Classification of Proteins
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Fold: RPB6/omega subunit-like

core: 2 helices and adjacent loops

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RPB6/omega subunit-like [63561]
    core: 2 helices and adjacent loops

Superfamilies:

  1. RPB6/omega subunit-like [63562] (2)
    the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits
    link to SUPERFAMILY database - Superfamily
    1. RNA polymerase omega subunit [63563] (3)
      4 helices; irregular array
      1. RNA polymerase omega subunit [63564]
        1. Thermus aquaticus [TaxId: 271] [63565] (3)
          1. 1ynj picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1i6ve_
            complexed with srn, zn
            1. region k:1-95 [123741] picpiclink
          2. 1i6v picpicxrefxrefxrefxref
            complexed with mg, rfp, zn
            1. chain e [61858] picpiclink
          3. 1ynn picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1i6ve_
            complexed with rfp, zn
            1. region k:1-95 [123746] picpiclink
        2. Thermus thermophilus [TaxId: 274] [74729] (16)
          SQ Q8RQE7; part of multichain biological unit
          1. 1smy picpicxrefxrefxrefxrefxrefxrefxref
            complexed with g4p, mg, zn
            1. chain e [105780] picpiclink
            2. chain o [105790] picpiclink
          2. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, std, zn
            1. region e:2-96 [126266] picpiclink
          3. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, std, zn
            1. region o:2-96 [126276] picpiclink
          4. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, rpt, zn
            1. region e:2-96 [126217] picpiclink
          5. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, rpt, zn
            1. region o:2-96 [126227] picpiclink
          6. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, rbt, zn
            1. region e:2-96 [126197] picpiclink
          7. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, rbt, zn
            1. region o:2-96 [126207] picpiclink
          8. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, tgt, zn
            1. region e:2-96 [128357] picpiclink
          9. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, tgt, zn
            1. region o:2-96 [128367] picpiclink
          10. 1iw7 picpicxrefxrefxrefxrefxrefxrefxref
            complexed with mg, pb
            1. chain e [71476] picpiclink
            2. chain o [71484] picpiclink
          11. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, zn
            1. region e:2-96 [126246] picpiclink
          12. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, zn
            1. region o:2-96 [126256] picpiclink
          13. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, std, zn
            1. region e:2-96 [125855] picpiclink
          14. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, std, zn
            1. region o:2-96 [125865] picpiclink
          15. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, zn
            1. region e:2-96 [130904] picpiclink
          16. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, zn
            1. region o:2-96 [130914] picpiclink
        3. Thermus thermophilus HB8 [TaxId: 300852] [158241] (2)
          1. 3dxj picpicxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, mpd, ne6, po4, zn
            1. region e:2-96 [157929] picpiclink
          2. 3dxj picpicxrefxrefxrefxref
            automatically matched to d1iw7e_
            complexed with mg, mpd, ne6, po4, zn
            1. region o:2-96 [157932] picpiclink
    2. RPB6 [55294] (2)
      1. RPB6 [55295]
        essential subunit of RNA polymerases I, II and III
        1. Human (Homo sapiens) [TaxId: 9606] [55296] (1)
          1. 1qkl picpic
            1. chain a [39754] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64318] (30)
          SQ P20435; part of multichain biological unit
          1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mn, utp, zn
            1. chain f [112731] picpiclink
          2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mn, zn
            1. chain f [61760] picpiclink
          3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ilx, mn, trx, zn
            1. chain f [68281] picpiclink
          4. 3cqz picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with ilx, trx, zn
            1. region f:72-155 [156931] picpiclink
          5. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. chain f [61613] picpiclink
          6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with dut, mg, zn
            1. region f:72-155 [138640] picpiclink
          7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with gtp, mn, zn
            1. chain f [112717] picpiclink
          8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with atp, mn, zn
            1. chain f [112702] picpiclink
          9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. chain f [61837] picpiclink
          10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with atp, mn, zn
            1. chain f [112757] picpiclink
          11. 2r7z picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with cpt, mg, zn
            1. region f:72-155 [151661] picpiclink
          12. 2r92 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with mg, zn
            1. region f:72-155 [151748] picpiclink
          13. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ctp, mn, zn
            1. chain f [112744] picpiclink
          14. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with mn, zn
            1. region f:72-155 [138686] picpiclink
          15. 2r93 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with mg, zn
            1. region f:72-155 [151757] picpiclink
          16. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with dgt, mg, zn
            1. region f:72-155 [132000] picpiclink
          17. 2vum picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with bru, ilx, mg, trx, zn
            1. region f:72-155 [153551] picpiclink
          18. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with g2p, mg, zn
            1. region f:72-154 [132013] picpiclink
          19. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with 5bu, mg, zn
            1. region f:72-155 [127924] picpiclink
          20. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with bru, mg, tt, zn
            1. region f:72-155 [138197] picpiclink
          21. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with bru, mg, tt, zn
            1. region r:72-155 [138213] picpiclink
          22. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with dut, mg, zn
            1. region f:72-155 [138673] picpiclink
          23. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with g2p, mg, zn
            1. region f:72-155 [138653] picpiclink
          24. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with bru, mg, zn
            1. region f:72-155 [138165] picpiclink
          25. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with bru, mg, tt, zn
            1. region f:72-155 [138229] picpiclink
          26. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with zn
            1. region f:72-155 [128083] picpiclink
          27. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with bru, mg, tt, zn
            1. region f:72-155 [138181] picpiclink
          28. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with mg, utp, zn
            1. region f:72-155 [140070] picpiclink
          29. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with gtp, mg, zn
            1. region f:72-154 [131987] picpiclink
          30. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i3qf_
            complexed with mg, utp, zn
            1. region f:72-154 [138699] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk