Structural Classification of Proteins
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Superfamily: RPB6/omega subunit-like

the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RPB6/omega subunit-like [63561]
    core: 2 helices and adjacent loops
  4. Superfamily: RPB6/omega subunit-like [63562]
    the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits
    link to SUPERFAMILY database - Superfamily

Families:

  1. RNA polymerase omega subunit [63563] (3)
    4 helices; irregular array
    1. RNA polymerase omega subunit [63564]
      1. Thermus aquaticus [TaxId: 271] [63565] (3)
        1. 1ynj picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1i6ve_
          complexed with srn, zn
          1. region k:1-95 [123741] picpiclink
        2. 1i6v picpicxrefxrefxrefxref
          complexed with mg, rfp, zn
          1. chain e [61858] picpiclink
        3. 1ynn picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1i6ve_
          complexed with rfp, zn
          1. region k:1-95 [123746] picpiclink
      2. Thermus thermophilus [TaxId: 274] [74729] (16)
        SQ Q8RQE7; part of multichain biological unit
        1. 1smy picpicxrefxrefxrefxrefxrefxrefxref
          complexed with g4p, mg, zn
          1. chain e [105780] picpiclink
          2. chain o [105790] picpiclink
        2. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, std, zn
          1. region e:2-96 [126266] picpiclink
        3. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, std, zn
          1. region o:2-96 [126276] picpiclink
        4. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, rpt, zn
          1. region e:2-96 [126217] picpiclink
        5. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, rpt, zn
          1. region o:2-96 [126227] picpiclink
        6. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, rbt, zn
          1. region e:2-96 [126197] picpiclink
        7. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, rbt, zn
          1. region o:2-96 [126207] picpiclink
        8. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, tgt, zn
          1. region e:2-96 [128357] picpiclink
        9. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, tgt, zn
          1. region o:2-96 [128367] picpiclink
        10. 1iw7 picpicxrefxrefxrefxrefxrefxrefxref
          complexed with mg, pb
          1. chain e [71476] picpiclink
          2. chain o [71484] picpiclink
        11. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, zn
          1. region e:2-96 [126246] picpiclink
        12. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, zn
          1. region o:2-96 [126256] picpiclink
        13. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, std, zn
          1. region e:2-96 [125855] picpiclink
        14. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, std, zn
          1. region o:2-96 [125865] picpiclink
        15. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, zn
          1. region e:2-96 [130904] picpiclink
        16. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, zn
          1. region o:2-96 [130914] picpiclink
      3. Thermus thermophilus HB8 [TaxId: 300852] [158241] (2)
        1. 3dxj picpicxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, mpd, ne6, po4, zn
          1. region e:2-96 [157929] picpiclink
        2. 3dxj picpicxrefxrefxrefxref
          automatically matched to d1iw7e_
          complexed with mg, mpd, ne6, po4, zn
          1. region o:2-96 [157932] picpiclink
  2. RPB6 [55294] (2)
    1. RPB6 [55295]
      essential subunit of RNA polymerases I, II and III
      1. Human (Homo sapiens) [TaxId: 9606] [55296] (1)
        1. 1qkl picpic
          1. chain a [39754] picpiclink
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64318] (30)
        SQ P20435; part of multichain biological unit
        1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mn, utp, zn
          1. chain f [112731] picpiclink
        2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mn, zn
          1. chain f [61760] picpiclink
        3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with ilx, mn, trx, zn
          1. chain f [68281] picpiclink
        4. 3cqz picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with ilx, trx, zn
          1. region f:72-155 [156931] picpiclink
        5. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, zn
          1. chain f [61613] picpiclink
        6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with dut, mg, zn
          1. region f:72-155 [138640] picpiclink
        7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with gtp, mn, zn
          1. chain f [112717] picpiclink
        8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with atp, mn, zn
          1. chain f [112702] picpiclink
        9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, zn
          1. chain f [61837] picpiclink
        10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with atp, mn, zn
          1. chain f [112757] picpiclink
        11. 2r7z picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with cpt, mg, zn
          1. region f:72-155 [151661] picpiclink
        12. 2r92 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with mg, zn
          1. region f:72-155 [151748] picpiclink
        13. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with ctp, mn, zn
          1. chain f [112744] picpiclink
        14. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with mn, zn
          1. region f:72-155 [138686] picpiclink
        15. 2r93 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with mg, zn
          1. region f:72-155 [151757] picpiclink
        16. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with dgt, mg, zn
          1. region f:72-155 [132000] picpiclink
        17. 2vum picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with bru, ilx, mg, trx, zn
          1. region f:72-155 [153551] picpiclink
        18. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with g2p, mg, zn
          1. region f:72-154 [132013] picpiclink
        19. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with 5bu, mg, zn
          1. region f:72-155 [127924] picpiclink
        20. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with bru, mg, tt, zn
          1. region f:72-155 [138197] picpiclink
        21. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with bru, mg, tt, zn
          1. region r:72-155 [138213] picpiclink
        22. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with dut, mg, zn
          1. region f:72-155 [138673] picpiclink
        23. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with g2p, mg, zn
          1. region f:72-155 [138653] picpiclink
        24. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with bru, mg, zn
          1. region f:72-155 [138165] picpiclink
        25. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with bru, mg, tt, zn
          1. region f:72-155 [138229] picpiclink
        26. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with zn
          1. region f:72-155 [128083] picpiclink
        27. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with bru, mg, tt, zn
          1. region f:72-155 [138181] picpiclink
        28. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with mg, utp, zn
          1. region f:72-155 [140070] picpiclink
        29. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with gtp, mg, zn
          1. region f:72-154 [131987] picpiclink
        30. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1i3qf_
          complexed with mg, utp, zn
          1. region f:72-154 [138699] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk