Structural Classification of Proteins
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Family: RNA polymerase omega subunit

4 helices; irregular array

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RPB6/omega subunit-like [63561]
    core: 2 helices and adjacent loops
  4. Superfamily: RPB6/omega subunit-like [63562]
    the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits
    link to SUPERFAMILY database - Superfamily
  5. Family: RNA polymerase omega subunit [63563]
    4 helices; irregular array

Protein Domains:

  1. RNA polymerase omega subunit [63564]
    1. Thermus aquaticus [TaxId: 271] [63565] (3)
      1. 1ynj picpicxrefxrefxrefxrefxrefxref
        automatically matched to d1i6ve_
        complexed with srn, zn
        1. region k:1-95 [123741] picpiclink
      2. 1i6v picpicxrefxrefxrefxref
        complexed with mg, rfp, zn
        1. chain e [61858] picpiclink
      3. 1ynn picpicxrefxrefxrefxrefxrefxref
        automatically matched to d1i6ve_
        complexed with rfp, zn
        1. region k:1-95 [123746] picpiclink
    2. Thermus thermophilus [TaxId: 274] [74729] (16)
      SQ Q8RQE7; part of multichain biological unit
      1. 1smy picpicxrefxrefxrefxrefxrefxrefxref
        complexed with g4p, mg, zn
        1. chain e [105780] picpiclink
        2. chain o [105790] picpiclink
      2. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, std, zn
        1. region e:2-96 [126266] picpiclink
      3. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, std, zn
        1. region o:2-96 [126276] picpiclink
      4. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, rpt, zn
        1. region e:2-96 [126217] picpiclink
      5. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, rpt, zn
        1. region o:2-96 [126227] picpiclink
      6. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, rbt, zn
        1. region e:2-96 [126197] picpiclink
      7. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, rbt, zn
        1. region o:2-96 [126207] picpiclink
      8. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, tgt, zn
        1. region e:2-96 [128357] picpiclink
      9. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, tgt, zn
        1. region o:2-96 [128367] picpiclink
      10. 1iw7 picpicxrefxrefxrefxrefxrefxrefxref
        complexed with mg, pb
        1. chain e [71476] picpiclink
        2. chain o [71484] picpiclink
      11. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, zn
        1. region e:2-96 [126246] picpiclink
      12. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, zn
        1. region o:2-96 [126256] picpiclink
      13. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, std, zn
        1. region e:2-96 [125855] picpiclink
      14. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, std, zn
        1. region o:2-96 [125865] picpiclink
      15. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, zn
        1. region e:2-96 [130904] picpiclink
      16. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, zn
        1. region o:2-96 [130914] picpiclink
    3. Thermus thermophilus HB8 [TaxId: 300852] [158241] (2)
      1. 3dxj picpicxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, mpd, ne6, po4, zn
        1. region e:2-96 [157929] picpiclink
      2. 3dxj picpicxrefxrefxrefxref
        automatically matched to d1iw7e_
        complexed with mg, mpd, ne6, po4, zn
        1. region o:2-96 [157932] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk