Structural Classification of Proteins

Superfamily: Homeodomain-like

: consists only of helices
uperfamily

Lineage:

Root: scop
Class: All alpha proteins [46456]
Fold: DNA/RNA-binding 3-helical bundle [46688]
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily: Homeodomain-like [46689]
consists only of helices
uperfamily

Families:

Homeodomain [46690] (42)
Pfam 00046
1. Engrailed Homeodomain [46691]
  1. Drosophila melanogaster [TaxId: 7227] [46692] (10)
    1. 1p7i
      complexed with nhe; mutant
      1. chain a [94279]
      2. chain b [94280]
      3. chain c [94281]
      4. chain d [94282]
    2. 1p7j
      complexed with nhe; mutant
      1. chain a [94283]
      2. chain b [94284]
      3. chain c [94285]
      4. chain d [94286]
    3. 2hdd
      protein/DNA complex; mutant
      1. chain a [15971]
      2. chain b [15972]
    4. 1enh
      1. chain a [15973]
    5. 1du0
      protein/DNA complex; mutant
      1. chain a [15974]
      2. chain b [15975]
    6. 3hdd
      protein/DNA complex
      1. chain a [15976]
      2. chain b [15977]
    7. 1hdd
      protein/DNA complex
      1. chain c [15978]
      2. chain d [15979]
    8. 2jwt
      automatically matched to d1hddc_
      1. region a:3-59 [148230]
    9. 2p81
      automatically matched to d1hddc_
      mutant
      1. region a:17-59 [139518]
    10. 1ztr
      mutant
      1. region a:0-59 [125655]
2. Mating type protein A1 Homeodomain [46693]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46694] (6)
    1. 1le8
      mutant
      1. chain a [73867]
    2. 1yrn
      protein/DNA complex
      1. chain a [15981]
    3. 1akh
      protein/DNA complex
      1. chain a [15980]
    4. 1f43
      1. chain a [15982]
    5. 1mh3
      chimera with maltose-binding protein
      mutant
      1. region a:472-526 [79112]
    6. 1mh4
      chimera with maltose-binding protein
      mutant
      1. region a:472-523 [79114]
3. mat alpha2 Homeodomain [46695]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46696] (6)
    1. 1k61
      complexed with ido
      1. chain a [77270]
      2. chain b [77271]
      3. chain c [77272]
      4. chain d [77273]
    2. 1mnm
      protein/DNA complex
      1. chain c [15983]
      2. chain d [15984]
    3. 1le8
      mutant
      1. chain b [73868]
    4. 1yrn
      protein/DNA complex
      1. chain b [15986]
    5. 1akh
      protein/DNA complex
      1. chain b [15985]
    6. 1apl
      protein/DNA complex
      1. chain c [15987]
      2. chain d [15988]
4. Hepatocyte nuclear factor 1a (LFB1/HNF1) [46697]
  atypical Homeodomain with a large insertion into HTH motif
  1. Rat (Rattus rattus) [TaxId: 10117] [46698] (2)
    1. 1lfb
      1. chain a [15989]
    2. 2lfb
      mutant
      1. chain a [15990]
  2. Human (Homo sapiens) [TaxId: 9606] [81680] (1)
    1. 1ic8
      1. region a:201-276 [76740]
      2. region b:201-278 [76742]
5. Oct-1 POU Homeodomain [46699]
  1. Human (Homo sapiens) [TaxId: 9606] [46700] (7)
    1. 1e3o
      mutant
      1. region c:104-160 [59197]
    2. 1gt0
      mutant
      1. region c:97-159 [76335]
    3. 1hf0
      mutant
      1. region a:102-159 [65820]
      2. region b:102-159 [65822]
    4. 1oct
      protein/DNA complex
      1. region c:102-161 [15991]
    5. 1o4x
      mutant
      1. region a:110-163 [92470]
    6. 1cqt
      1. region a:102-161 [15992]
      2. region b:602-661 [15993]
    7. 1pog
      mutant
      1. chain a [15994]
6. Pit-1 POU homeodomain [46701]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [46702] (1)
    1. 1au7
      protein/DNA complex; mutant
      1. region a:103-160 [15995]
      2. region b:103-160 [15996]
7. Thyroid transcription factor 1 homeodomain [46703]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [46704] (1)
    1. 1ftt
      1. chain a [15997]
8. Oct-2 POU Homeodomain [46705]
  1. Human (Homo sapiens) [TaxId: 9606] [46706] (1)
    1. 1hdp
      1. chain a [15998]
9. Oct-3 POU Homeodomain [46707]
  1. Mouse (Mus musculus) [TaxId: 10090] [46708] (1)
    1. 1ocp
      1. chain a [15999]
10. Homeobox protein hox-b1 [46709]
  1. Human (Homo sapiens) [TaxId: 9606] [46710] (1)
    1. 1b72
      protein/DNA complex; mutant
      1. chain a [16000]
11. Homeobox protein hox-a9 [100994]
  1. Mouse (Mus musculus) [TaxId: 10090] [100995] (1)
    1. 1puf
      1. chain a [95131]
12. pbx1 [46711]
  1. Human (Homo sapiens) [TaxId: 9606] [46712] (2)
    1. 1puf
      1. chain b [95132]
    2. 1b72
      protein/DNA complex; mutant
      1. chain b [16001]
  2. Mouse (Mus musculus) [TaxId: 10090] [46713] (2)
    1. 1lfu
      mutant
      1. chain p [77939]
    2. 1du6
      1. chain a [16002]
13. Insulin gene enhancer protein isl-1 [46714]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [46715] (1)
    1. 1bw5
      1. chain a [16003]
14. Msx-1 homeodomain [63463]
  1. Mouse (Mus musculus) [TaxId: 10090] [63464] (1)
    1. 1ig7
      1. chain a [62365]
15. Antennapedia Homeodomain [46716]
  1. Drosophila melanogaster [TaxId: 7227] [46717] (5)
    1. 9ant
      protein/DNA complex; complexed with ni; mutant
      1. chain a [16004]
      2. chain b [16005]
    2. 1ahd
      protein/DNA complex; mutant
      1. chain p [16006]
    3. 1san
      mutant
      1. chain a [16008]
    4. 1hom
      1. chain a [16007]
    5. 2hoa
      mutant
      1. chain a [16009]
16. Ultrabithorax (ubx) homeodomain [46718]
  1. Drosophila melanogaster [TaxId: 7227] [46719] (1)
    1. 1b8i
      mutant
      1. chain a [16010]
17. Extradenticle (exd) homeodomain [46720]
  1. Drosophila melanogaster [TaxId: 7227] [46721] (3)
    1. 2r5y
      automatically matched to d1b8ib_
      1. region b:205-259 [151597]
    2. 2r5z
      automatically matched to d1b8ib_
      1. region b:205-259 [151598]
    3. 1b8i
      mutant
      1. chain b [16011]
18. Even-skipped homeodomain [63465]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [63466] (1)
    1. 1jgg
      complexed to AT-rich DNA
      1. chain a [62950]
      2. chain b [62951]
19. Fushi Tarazu protein [46722]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [46723] (1)
    1. 1ftz
      1. chain a [16012]
20. VND/NK-2 protein [46724]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [46725] (4)
    1. 1vnd
      1. chain a [16014]
    2. 1nk3
      protein/DNA complex
      1. chain p [16013]
    3. 1nk2
      protein/DNA complex
      1. chain p [16015]
    4. 1qry
      mutant
      1. chain a [16016]
21. Paired protein [46726]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [46727] (1)
    1. 1fjl
      protein/DNA complex; mutant
      1. chain a [16017]
      2. chain b [16018]
      3. chain c [16019]
22. Homeo-prospero domain of Prospero protein [81681]
  single domain composed of a homeodomain-homology N-terminal region (1245-1295) and the prospero-specific C-terminal region (1296-1396) that forms a 4-helical bundle
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [81682] (2)
    1. 1mij
      complexed with mse
      1. chain a [79150]
    2. 1xpx
      automatically matched to d1mija_
      1. region a:1245-1396 [122230]
23. Homeodomain-only protein, Hop [109647]
  1. Mouse (Mus musculus) [TaxId: 10090] [109648] (2)
    SQ Q8R1H0
    1. 1uhs
      1. chain a [107853]
    2. 2hi3
      automatically matched to d1uhsa_
      1. region a:10-73 [136522]
24. ZF-HD homeobox protein At5g65410 [116772]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116773] (1)
    SQ Q9FKP8 182-248
    1. 1wh5
      Structural genomics target
      1. chain a [114633]
25. ZF-HD homeobox protein At4g24660 [116774]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116775] (1)
    SQ Q9SB61 148-215
    1. 1wh7
      Structural genomics target
      1. chain a [114635]
26. DNA-binding protein SATB2 [116776]
  1. Human (Homo sapiens) [TaxId: 9606] [116777] (1)
    SQ Q9UPW6 615-672 # the structure of the 1st CUT domain (350-437) is also known: 1WIZ
    1. 1wi3
      Structural genomics target
      1. chain a [114660]
27. Homeobox-leucine zipper protein Homez [116778]
  1. Human (Homo sapiens) [TaxId: 9606] [116779] (1)
    SQ Q8IX15 337-399
    Structural genomics target
    1. 2ecc
      automatically matched to d1wjha_
      1. region a:1-76 [132104]
28. Hepatocyte nuclear factor 6 [116780]
  1. Mouse (Mus musculus) [TaxId: 10090] [116781] (1)
    SQ O08755 291-437
    1. 1s7e
      1. region a:103-152 [112044]
29. LAG1 longevity assurance homolog 5, LASS5 [140141]
  1. Mouse (Mus musculus) [TaxId: 10090] [140142] (1)
    SQ Q9D6K9 77-135
    1. 2cqx
      1. region a:8-66 [130731]
30. Paired box protein pax6 [140143]
  1. Human (Homo sapiens) [TaxId: 9606] [140144] (1)
    SQ P26367 211-278
    1. 2cue
      1. region a:7-74 [130808]
31. Transcriptional adaptor 2-like, TADA2L, isoform b [140145]
  1. Human (Homo sapiens) [TaxId: 9606] [140146] (1)
    SQ Q9BVJ0 72-118
    1. 1x41
      1. region a:8-54 [121676]
32. Lag1 longevity assurance homolog 6, LASS6 [140147]
  1. Mouse (Mus musculus) [TaxId: 10090] [140148] (1)
    SQ Q8C172 76-127
    1. 1x2m
      1. region a:8-59 [121645]
33. Homeobox protein prh [140149]
  1. Human (Homo sapiens) [TaxId: 9606] [140150] (1)
    SQ Q03014 138-194
    1. 2e1o
      1. region a:8-64 [131965]
34. Pituitary homeobox 2 [140151]
  1. Human (Homo sapiens) [TaxId: 9606] [140152] (1)
    SQ Q99697 85-144
    1. 1yz8
      mutant
      1. region p:1-60 [124270]
35. Homeobox protein pknox1 [140153]
  1. Human (Homo sapiens) [TaxId: 9606] [140154] (1)
    SQ P55347 257-318
    1. 1x2n
      1. region a:6-67 [121646]
36. Homeotic bicoid protein [140155]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [140156] (1)
    SQ P09081 97-163
    1. 1zq3
      1. region p:2-68 [125499]
37. Hypothetical protein 4930532d21rik [140157]
  1. Mouse (Mus musculus) [TaxId: 10090] [140158] (1)
    SQ Q8C0V1 712-760
    1. 1x58
      1. region a:8-56 [121705]
38. Homeobox-containing protein 1, HMBOX1 (Flj21616) [140159]
  1. Human (Homo sapiens) [TaxId: 9606] [140160] (1)
    SQ Q6NT76 268-350
    1. 2cuf
      1. region a:8-89 [130809]
39. Homeobox protein hox-b13 [140161]
  1. Human (Homo sapiens) [TaxId: 9606] [140162] (1)
    SQ Q92826 216-273
    1. 2cra
      1. region a:7-64 [130736]
40. Zinc fingers and homeoboxes protein 1, ZHX1 [158242]
  1. Human (Homo sapiens) [TaxId: 9606] [158243] (1)
    SQ Q9UKY1 565-640
    1. 2ecb
      1. region a:8-83 [146789]
Recombinase DNA-binding domain [46728] (5)
1. HIN recombinase (DNA-binding domain) [46729]
  1. Synthetic [46730] (8)
    1. 1ijw
      complexed with bro, trs; mutant
      1. chain c [66171]
    2. 1jj6
      complexed with ido, trs; mutant
      1. chain c [66756]
    3. 1jko
      complexed with trs; mutant
      1. chain c [66809]
    4. 1jj8
      complexed with ido; mutant
      1. chain c [66757]
    5. 1jkr
      complexed with trs; mutant
      1. chain c [66812]
    6. 1jkp
      mutant
      1. chain c [66810]
    7. 1jkq
      mutant
      1. chain c [66811]
    8. 1hcr
      protein/DNA complex
      1. chain a [16020]
2. gamma,delta resolvase (C-terminal domain) [46731]
  1. Escherichia coli [TaxId: 562] [46732] (11)
    1. 1gdt
      protein/DNA complex; mutant
      1. region a:141-183 [16021]
      2. region b:141-183 [16022]
    2. 1zr4
      automatically matched to d1gdta1
      mutant
      1. region a:141-183 [125517]
    3. 1zr4
      automatically matched to d1gdta1
      mutant
      1. region b:141-183 [125519]
    4. 1zr4
      automatically matched to d1gdta1
      mutant
      1. region d:141-183 [125521]
    5. 1zr4
      automatically matched to d1gdta1
      mutant
      1. region e:141-183 [125523]
    6. 2gm4
      automatically matched to d1gdta1
      mutant
      1. region a:141-183 [135360]
    7. 2gm4
      automatically matched to d1gdta1
      mutant
      1. region b:141-183 [135362]
    8. 1zr2
      automatically matched to d1gdta1
      mutant
      1. region a:141-183 [125509]
    9. 1zr2
      automatically matched to d1gdta1
      mutant
      1. region b:141-183 [125511]
    10. 1ret
      1. chain a [16024]
    11. 1res
      1. chain a [16023]
3. Transposase tc3a1-65 [46733]
  1. Caenorhabditis elegans [TaxId: 6239] [46734] (2)
    SQ P34257 2-104
    1. 1tc3
      protein/DNA complex; mutant
      1. chain c [16025]
    2. 1u78
      mutant
      1. region a:2-54 [107712]
      2. region a:55-104 [107713]
4. Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase [46735]
  contains additional helix at each terminus
  1. Bacteriophage mu [TaxId: 10677] [46736] (2)
    1. 2ezl
      1. chain a [16026]
    2. 2ezk
      1. chain a [16027]
5. Transposase [46737]
  1. Bacteriophage mu [TaxId: 10677] [46738] (2)
    1. 2ezi
      1. chain a [16028]
    2. 2ezh
      1. chain a [16029]
Myb/SANT domain [46739] (15)
1. c-Myb, DNA-binding domain [46740]
  duplication
  1. Mouse (Mus musculus) [TaxId: 10090] [46742] (16)
    1. 1gvd
      repeat 2
      complexed with nh4, so4; mutant
      1. chain a [83338]
    2. 1gv5
      repeat 2
      complexed with na
      1. chain a [83337]
    3. 1gv2
      repeats 2 & 3
      complexed with na
      1. region a:89-143 [83335]
      2. region a:144-190 [83336]
    4. 1guu
      repeat 1
      complexed with na
      1. chain a [83332]
    5. 1h88
      complexed with nh4; mutant
      1. region c:39-88 [65721]
      2. region c:89-143 [65722]
      3. region c:144-190 [65723]
    6. 1mbj
      repeat 3
      complexed with nh2
      1. chain a [16035]
    7. 1mbk
      repeat 3
      complexed with nh2
      1. chain a [16031]
    8. 1mbh
      repeat 2
      complexed with nh2
      1. chain a [16036]
    9. 1mbf
      repeat 1
      complexed with nh2
      1. chain a [16037]
    10. 1mbe
      repeat 1
      complexed with nh2
      1. chain a [16038]
    11. 1mbg
      repeat 2
      complexed with nh2
      1. chain a [16033]
    12. 1idz
      repeat 3
      mutant
      1. chain a [16032]
    13. 1idy
      repeat 3
      mutant
      1. chain a [16034]
    14. 1msf
      repeats 2 & 3
      protein/DNA complex
      1. region c:89-143 [16041]
      2. region c:144-193 [16042]
    15. 1mse
      repeats 2 & 3
      protein/DNA complex
      1. region c:89-143 [16039]
      2. region c:144-193 [16040]
    16. 1h89
      repeat 1 is partly disordered
      complexed with k; mutant
      1. region c:77-88 [65726]
      2. region c:89-143 [65727]
      3. region c:144-191 [65728]
2. b-Myb DNA binding domain [46743]
  1. Chicken (Gallus gallus) [TaxId: 9031] [46744] (1)
    1. 1a5j
      repeats 2 & 3
      1. region a:1-55 [16043]
      2. region a:56-110 [16044]
3. v-Myb [68960]
  1. Avian myeloblastosis virus [TaxId: 11866] [68961] (1)
    1. 1h8a
      repeats 2 & 3
      1. region c:87-143 [65731]
      2. region c:144-191 [65732]
4. Rap1 [63467]
  1. Human (Homo sapiens) [TaxId: 9606] [63468] (1)
    1. 1fex
      mutant
      1. chain a [59803]
5. SANT domain of the nucleosome remodeling ATPase ISWI [100996]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [100997] (1)
    1. 1ofc
      complexed with g4d, glc, gol
      1. region x:799-850 [92826]
6. 2610100b20rik gene product [109649]
  1. Mouse (Mus musculus) [TaxId: 10090] [109650] (1)
    SQ Q80TB4 1951-2032
    1. 1ug2
      Structural genomics target
      1. chain a [107823]
7. Hypothetical protein C14orf106 (KIAA1903) [116782]
  1. Human (Homo sapiens) [TaxId: 9606] [116783] (1)
    SQ Q6P0N0 877-936
    1. 1wgx
      Structural genomics target
      1. chain a [114626]
8. Metastasis associated protein MTA3 [140163]
  1. Mouse (Mus musculus) [TaxId: 10090] [140164] (1)
    SQ Q924K8 267-323
    1. 2crg
      1. region a:8-64 [130739]
9. REST corepressor 1, CoREST [140165]
  1. Human (Homo sapiens) [TaxId: 9606] [140166] (2)
    SQ Q9UKL0 376-440
    1. 2iw5
      2nd SANT domain; in the PDB chain, also there is a coil coiled region N-terminally to this domain
      complexed with cl, fad, gol, nh4
      1. region b:376-440 [137739]
    2. 2uxn
      automatically matched to 2IW5 B:376-440
      complexed with cl, fda, gol, lyp
      1. region b:376-440 [140024]
10. Radialis [140167]
  stand-alone Myb/SANT domain
  1. Garden snapdragon (Antirrhinum majus) [TaxId: 4151] [140168] (1)
    SQ Q58FS3 8-70
    1. 2cjj
      1. region a:8-70 [130540]
11. DnaJ homolog subfamily C member 1 [140169]
  1. Human (Homo sapiens) [TaxId: 9606] [140170] (2)
    SQ Q96KC8 327-385! SQ Q96KC8 484-543
    1. 2cqq
      1st Myb domain
      1. region a:8-66 [130728]
    2. 2cqr
      2nd Myb domain
      1. region a:7-66 [130729]
12. Nuclear receptor corepressor 2 [140171]
  1. Human (Homo sapiens) [TaxId: 9606] [140172] (1)
    SQ Q9Y618 413-480
    1. 1xc5
      1. region a:413-480 [121850]
13. MYSM1 (KIAA1915) [140173]
  1. Human (Homo sapiens) [TaxId: 9606] [140174] (1)
    SQ Q5VVJ2 117-181
    1. 2cu7
      1. region a:8-72 [130805]
14. Telomere binding protein TBP1 [158244]
  1. Tobacco (Nicotiana tabacum) [TaxId: 4097] [158245] (3)
    SQ Q84ZU4 578-660
    1. 2ckx
      1. region a:578-660 [146411]
    2. 2qhb
      automatically matched to 2CKX A:578-660
      1. region a:578-659 [150786]
    3. 2qhb
      automatically matched to 2CKX A:578-660
      1. region b:578-659 [150787]
15. Telomere repeat-binding protein [158246]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [158247] (1)
    SQ Q9LTI6 464-560
    1. 2aje
      1. region a:9-105 [146056]
SLIDE domain [100998] (1)
myb-related probable DNA-binding motif
1. SLIDE domain of the nucleosome remodeling ATPase ISWI [100999]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [101000] (1)
    1. 1ofc
      includes alpha-helical spacer, residues 851-891, separating SANT and SLIDE domains
      complexed with g4d, glc, gol
      1. region x:851-978 [92827]
GARP response regulators [81683] (1)
plant myb-related DNA-binding motif
1. Arr10-B [81684]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [81685] (1)
    1. 1irz
      1. chain a [76772]
DNA-binding domain of telomeric protein [46745] (2)
part of Pfam 00249 (Myb/SANT domain)
1. DNA-binding domain of human telomeric protein, hTRF1 [46746]
  1. Human (Homo sapiens) [TaxId: 9606] [46747] (4)
    SQ P54274 379-430 # structure of dimerisation domain (62-265) is also known (scop_sp 63603)
    1. 1w0t
      1. chain a [114070]
      2. chain b [114071]
    2. 1ity
      1. chain a [71427]
    3. 1iv6
      1. chain a [71441]
    4. 1ba5
      1. chain a [16045]
2. Telomeric repeat binding factor 2, TRF2 [116784]
  1. Human (Homo sapiens) [TaxId: 9606] [116785] (4)
    SQ Q15554 446-500 # structure of dimerisation domain (43-245) is also known (scop_sp 63605)
    1. 1w0u
      1. chain a [114072]
      2. chain b [114073]
    2. 1xg1
      1. region a:5-67 [121973]
    3. 1vf9
      automatically matched to 1XG1 A:5-67
      1. region a:438-500 [120031]
    4. 1vfc
      automatically matched to 1XG1 A:5-67
      1. region a:438-500 [120032]
Paired domain [46748] (3)
duplication: consists of two domains of this fold
1. Pax-5 [68962]
  1. Human (Homo sapiens) [TaxId: 9606] [68963] (2)
    1. 1k78
      1. region a:19-81 [68255]
      2. region a:82-142 [68256]
      3. region e:19-81 [68258]
      4. region e:82-142 [68259]
      5. region i:84-141 [68261]
    2. 1mdm
      1. region a:19-81 [79010]
      2. region a:82-142 [79011]
2. Pax-6 [68936]
  1. Human (Homo sapiens) [TaxId: 9606] [46750] (1)
    1. 6pax
      1. region a:1-68 [64758]
      2. region a:69-133 [64759]
3. Paired protein (prd) [46751]
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [46752] (1)
    1. 1pdn
      protein/DNA complex
      1. chain c [16047]
DNA-binding domain of rap1 [46753] (1)
duplication: consist of two domains of this fold
1. DNA-binding domain of rap1 [46754]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46755] (1)
    1. 1ign
      protein/DNA complex
      1. region a:360-445 [16048]
      2. region a:446-594 [16049]
      3. region b:360-445 [16050]
      4. region b:446-594 [16051]
Centromere-binding [46756] (2)
duplication: tandem repeat of two similar domains
1. DNA-binding domain of centromere binding protein B (CENP-B) [46757]
  1. Human (Homo sapiens) [TaxId: 9606] [46758] (2)
    1. 1hlv
      1. region a:1-66 [65854]
      2. region a:67-131 [65855]
    2. 1bw6
      the N-terminal domain only
      1. chain a [16052]
2. Ars-binding protein 1, ABP1 [74670]
  1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [74671] (1)
    1. 1iuf
      low resolution solution structure
      1. region a:-2-75 [71439]
      2. region a:76-141 [71440]
FIS-like [100918] (4)
1. FIS protein [48285]
  includes N-terminal dimerisation subdomain
  1. Escherichia coli [TaxId: 562] [48286] (12)
    1. 1etx
      mutant
      1. chain a [18978]
      2. chain b [18979]
    2. 1etv
      mutant
      1. chain a [18986]
      2. chain b [18987]
    3. 1fip
      mutant
      1. chain a [18980]
      2. chain b [18981]
    4. 1eto
      mutant
      1. chain a [18982]
      2. chain b [18983]
    5. 1etw
      mutant
      1. chain a [18988]
      2. chain b [18989]
    6. 1fia
      1. chain a [18984]
      2. chain b [18985]
    7. 1ety
      1. chain a [18990]
      2. chain b [18991]
    8. 1etk
      mutant
      1. chain a [18992]
      2. chain b [18993]
    9. 3fis
      1. chain a [18994]
      2. chain b [18995]
    10. 4fis
      mutant
      1. chain a [18996]
      2. chain b [18997]
    11. 1f36
      mutant
      1. chain a [18998]
      2. chain b [18999]
    12. 1etq
      mutant
      1. chain a [19000]
      2. chain b [19001]
      3. chain c [19002]
      4. chain d [19003]
2. DNA-binding domain of NTRC [48287]
  includes N-terminal dimerisation subdomain
  1. Salmonella typhimurium [TaxId: 90371] [48288] (1)
    1. 1ntc
      mutant
      1. chain a [19004]
      2. chain b [19005]
3. Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain [101001]
  1. Rhodobacter sphaeroides [TaxId: 1063] [101002] (1)
    1. 1umq
      1. chain a [99625]
4. Transcriptional regulator TyrR, C-terminal domain [63470]
  1. Haemophilus influenzae [TaxId: 727] [63471] (1)
    1. 1g2h
      1. chain a [60224]
AraC type transcriptional activator [46759] (2)
duplication: consists of two structural repeats bipartite HTH protein
1. MarA [46760]
  1. Escherichia coli [TaxId: 562] [46761] (1)
    1. 1bl0
      CASP3
      1. region a:9-62 [16053]
      2. region a:63-124 [16054]
2. Rob transcription factor, N-terminal domain [46762]
  1. Escherichia coli [TaxId: 562] [46763] (1)
    1. 1d5y
      protein/DNA complex
      1. region a:3-56 [16055]
      2. region a:57-121 [16056]
      3. region b:3-56 [16057]
      4. region b:57-121 [16058]
      5. region c:3-56 [16059]
      6. region c:57-121 [16060]
      7. region d:3-56 [16061]
      8. region d:57-121 [16062]
Tetracyclin repressor-like, N-terminal domain [46764] (34)
1. Tetracyclin repressor (Tet-repressor, TetR) [46765]
  1. Escherichia coli [TaxId: 562] [46766] (13)
    1. 2vkv
      automatically matched to d1a6ia1
      complexed with mg, tdc; mutant
      1. region a:6-67 [153230]
    2. 2vke
      automatically matched to d1a6ia1
      complexed with cl, co, tac
      1. region a:2-67 [153221]
    3. 2o7o
      automatically matched to d1a6i_1
      complexed with cl, dxt, mg, so4; mutant
      1. region a:2-67 [138930]
    4. 2fj1
      automatically matched to d1a6i_1
      complexed with cl, ctc, ni; mutant
      1. region a:2-67 [133541]
    5. 2tct
      complexed with ctc, mg
      1. region a:2-67 [16063]
    6. 1bjz
      mutant
      1. region a:2-67 [16065]
    7. 1a6i
      class d variant
      mutant
      1. region a:2-67 [16066]
    8. 1ork
      class d variant
      complexed with atc, mg; mutant
      1. region a:2-67 [16067]
    9. 1du7
      class d; complex with 4-epi-tetracycline
      complexed with ctc; mutant
      1. region a:2-67 [16071]
    10. 1bj0
      complexed with ctc; mutant
      1. region a:2-67 [16068]
    11. 2trt
      complexed with mg, tac
      1. region a:2-67 [16064]
    12. 1bjy
      complexed with ctc, mg; mutant
      1. region a:2-67 [16069]
      2. region b:2-67 [16070]
    13. 1qpi
      complexed with imd
      1. region a:4-67 [16072]
2. Multidrug binding protein QacR [68964]
  1. Staphylococcus aureus [TaxId: 1280] [68965] (47)
    SQ P23217
    1. 1jt6
      complexed with deq, so4; mutant
      1. region b:2-72 [67249]
      2. region d:2-72 [67251]
      3. region a:2-72 [67247]
      4. region e:2-72 [67253]
    2. 1rkw
      complexed with pnt, so4; mutant
      1. region a:2-72 [104967]
      2. region b:2-72 [104969]
      3. region d:2-72 [104971]
      4. region e:2-72 [104973]
    3. 2hq5
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region a:2-72 [147329]
    4. 2hq5
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region b:2-72 [147331]
    5. 2hq5
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region d:2-72 [147333]
    6. 2hq5
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region e:2-72 [147335]
    7. 1jus
      complexed with rhq, so4; mutant
      1. region b:2-72 [67328]
      2. region d:2-72 [67330]
      3. region a:2-72 [67326]
      4. region e:2-72 [67332]
    8. 2dtz
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region a:2-72 [146578]
    9. 3bt9
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region a:2-72 [155550]
    10. 3bti
      automatically matched to d1jt0a1
      complexed with ber, so4; mutant
      1. region a:2-72 [155566]
    11. 2dtz
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region b:2-72 [146580]
    12. 2dtz
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region d:2-72 [146582]
    13. 2dtz
      automatically matched to d1jt0a1
      complexed with so4; mutant
      1. region e:2-72 [146584]
    14. 3bt9
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region b:2-72 [155552]
    15. 3bt9
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region d:2-72 [155554]
    16. 3bt9
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region e:2-72 [155556]
    17. 3bti
      automatically matched to d1jt0a1
      complexed with ber, so4; mutant
      1. region b:2-72 [155568]
    18. 3bti
      automatically matched to d1jt0a1
      complexed with ber, so4; mutant
      1. region d:2-72 [155570]
    19. 3bti
      automatically matched to d1jt0a1
      complexed with ber, so4; mutant
      1. region e:2-72 [155572]
    20. 3btl
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region a:2-72 [155582]
    21. 3btl
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region b:2-72 [155584]
    22. 3btl
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region d:2-72 [155586]
    23. 3btl
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region e:2-72 [155588]
    24. 1rpw
      complexed with did, so4; mutant
      1. region a:2-72 [105036]
      2. region b:2-72 [105038]
      3. region c:2-72 [105040]
      4. region d:2-72 [105042]
    25. 3btj
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region a:2-72 [155574]
    26. 3btj
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region b:2-72 [155576]
    27. 3btj
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region d:2-72 [155578]
    28. 3btj
      automatically matched to d1jt0a1
      complexed with deq, so4; mutant
      1. region e:2-72 [155580]
    29. 1jtx
      complexed with cvi, so4; mutant
      1. region b:2-72 [67286]
      2. region d:2-72 [67288]
      3. region a:2-72 [67284]
      4. region e:2-72 [67290]
    30. 2g0e
      automatically matched to d1jt0a1
      complexed with cgq, so4
      1. region a:2-72 [147058]
    31. 2g0e
      automatically matched to d1jt0a1
      complexed with cgq, so4
      1. region b:2-72 [147060]
    32. 2g0e
      automatically matched to d1jt0a1
      complexed with cgq, so4
      1. region d:2-72 [147062]
    33. 2g0e
      automatically matched to d1jt0a1
      complexed with cgq, so4
      1. region e:2-72 [147064]
    34. 1qvt
      complexed with pf, so4
      1. region a:2-72 [104602]
      2. region b:2-72 [104604]
      3. region d:2-72 [104606]
      4. region e:2-72 [104608]
    35. 2gby
      automatically matched to d1jt0a1
      complexed with brn, so4
      1. region a:2-72 [147102]
    36. 2gby
      automatically matched to d1jt0a1
      complexed with brn, so4
      1. region b:2-72 [147104]
    37. 2gby
      automatically matched to d1jt0a1
      complexed with brn, so4
      1. region d:2-72 [147106]
    38. 2gby
      automatically matched to d1jt0a1
      complexed with brn, so4
      1. region e:2-72 [147108]
    39. 3btc
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region a:2-72 [155558]
    40. 3btc
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region b:2-72 [155560]
    41. 3btc
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region d:2-72 [155562]
    42. 3btc
      automatically matched to d1jt0a1
      complexed with mgr, so4; mutant
      1. region e:2-72 [155564]
    43. 1qvu
      complexed with et, pf
      1. region a:2-72 [104610]
      2. region b:2-72 [104612]
      3. region d:2-72 [104614]
      4. region e:2-72 [104616]
    44. 1jt0
      complexed with so4; mutant
      1. region a:2-72 [71850]
      2. region b:2-72 [71852]
      3. region c:2-72 [71854]
      4. region d:2-72 [71856]
    45. 1jum
      complexed with ber, so4; mutant
      1. region b:2-72 [67306]
      2. region d:2-72 [67308]
      3. region a:2-72 [67304]
      4. region e:2-72 [67310]
    46. 1jup
      complexed with mgr, so4; mutant
      1. region b:2-72 [67316]
      2. region d:2-72 [67318]
      3. region a:2-72 [67314]
      4. region e:2-72 [67320]
    47. 1jty
      complexed with et, so4; mutant
      1. region b:2-72 [67294]
      2. region d:2-72 [67296]
      3. region a:2-72 [67292]
      4. region e:2-72 [67298]
3. Hypothetical transcriptional regulator YcdC [88973]
  1. Escherichia coli [TaxId: 562] [88974] (1)
    1. 1pb6
      1. region a:14-85 [88017]
      2. region b:14-85 [88019]
      3. region c:14-85 [88021]
      4. region d:14-85 [88023]
4. Hypothetical transcriptional regulator YsiA [101003]
  1. Bacillus subtilis [TaxId: 1423] [101004] (1)
    1. 1vi0
      structural genomics
      complexed with dcc
      1. region a:6-77 [100720]
      2. region b:6-77 [100722]
5. Hypothetical transcriptional regulator YfiR [101005]
  1. Bacillus subtilis [TaxId: 1423] [101006] (1)
    1. 1rkt
      structural genomics
      complexed with unx
      1. region a:2-82 [97623]
      2. region b:6-82 [97625]
6. Ethr repressor [109651]
  1. Mycobacterium tuberculosis [TaxId: 1773] [109652] (3)
    SQ P96222 22-215
    1. 1t56
      complexed with dox, gol
      1. region a:22-94 [106428]
    2. 1u9n
      complexed with cns
      1. region a:22-94 [113246]
    3. 1u9o
      complexed with cns
      1. region a:22-94 [113248]
7. A-factor receptor homolog CprB [109653]
  gamma-butyrolactone receptor
  1. Streptomyces coelicolor [TaxId: 1902] [109654] (2)
    SQ O66122
    1. 1ui5
      1. region a:5-75 [107856]
      2. region b:5-75 [107858]
    2. 1ui6
      1. region a:5-75 [107860]
      2. region b:6-75 [107862]
8. Putative transcriptional repressor YbiH [109655]
  1. Salmonella typhimurium [TaxId: 90371] [109656] (1)
    SQ Q8ZQN9
    1. 1t33
      Structural genomics target
      1. region a:1-88 [106295]
      2. region b:7-88 [106297]
9. Putative transcriptional regulator YxaF [109657]
  1. Bacillus subtilis [TaxId: 1423] [109658] (1)
    SQ P42105
    1. 1sgm
      1. region a:5-77 [105537]
      2. region b:5-77 [105539]
10. Transcriptional regulator BC3163 [140175]
  1. Bacillus cereus [TaxId: 1396] [140176] (1)
    SQ Q81BJ4 9-77
    1. 2fq4
      1. region a:9-77 [133937]
11. Putative transcriptional regulator [140177]
  1. Rhodococcus sp. rha1 [TaxId: 101510] [140178] (2)
    1. 2g3b
      complexed with gol
      1. region a:2-73 [134558]
    2. 2g3b
      automatically matched to 2G3B A:2-73
      complexed with gol
      1. region b:2-73 [134560]
12. Putative transcriptional regulator SCO5951 [140179]
  1. Streptomyces coelicolor [TaxId: 1902] [140180] (2)
    SQ O54180 13-80
    1. 2id3
      complexed with ca, cl
      1. region a:13-80 [137261]
    2. 2id3
      automatically matched to 2ID3 A:13-80
      complexed with ca, cl
      1. region b:14-80 [137263]
13. Transcriptional regulator Cgl2612 [140181]
  1. Corynebacterium glutamicum [TaxId: 1718] [140182] (4)
    SQ Q8NMG3 1-174
    1. 1v7b
      1. region a:1-74 [119861]
    2. 1v7b
      automatically matched to 1V7B A:1-74
      1. region b:3-74 [119863]
    3. 2zoz
      complexed with et, gol, so4
      1. region a:3-73 [154740]
    4. 2zoz
      automatically matched to 2ZOZ A:3-73
      complexed with et, gol, so4
      1. region b:3-73 [154742]
14. Transcriptional regulator EF0787 [140183]
  1. Enterococcus faecalis [TaxId: 1351] [140184] (2)
    SQ Q837P6 4-71
    1. 1z0x
      complexed with cl
      1. region a:4-71 [124334]
    2. 1z0x
      automatically matched to 1Z0X A:4-71
      complexed with cl
      1. region b:4-71 [124336]
15. Putative transcriptional regulator RHA1_ro09068 [140185]
  1. Rhodococcus sp. [TaxId: 1831] [140186] (2)
    SQ Q0RX74 10-78
    1. 2i10
      complexed with npo, pge
      1. region a:10-78 [136960]
    2. 2i10
      automatically matched to 2I10 A:10-78
      complexed with npo, pge
      1. region b:11-78 [136962]
16. Probable transcriptional regulator PA3133 [140187]
  1. Pseudomonas aeruginosa [TaxId: 287] [140188] (1)
    SQ Q9HZ91 1-76
    1. 2fd5
      1. region a:1-76 [133291]
17. Transcriptional regulator RHA1_ro04179 [140189]
  1. Rhodococcus sp. [TaxId: 1831] [140190] (4)
    SQ Q0S914 9-77
    1. 2np5
      complexed with lmt, nds
      1. region a:9-77 [138424]
    2. 2np5
      automatically matched to 2NP5 A:9-77
      complexed with lmt, nds
      1. region b:9-77 [138426]
    3. 2np5
      automatically matched to 2NP5 A:9-77
      complexed with lmt, nds
      1. region c:10-77 [138428]
    4. 2np5
      automatically matched to 2NP5 A:9-77
      complexed with lmt, nds
      1. region d:10-77 [138430]
18. Transcriptional regulator BC5000 [140191]
  1. Bacillus cereus [TaxId: 1396] [140192] (2)
    SQ Q815X4 6-77
    1. 1zk8
      1. region a:6-77 [125177]
    2. 1zk8
      automatically matched to 1ZK8 A:6-77
      1. region b:8-77 [125179]
19. Probable transcriptional regulator RHA1_ro04631 [140193]
  1. Rhodococcus sp. rha1 [TaxId: 101510] [140194] (2)
    SQ Q0S7R9 4-80
    1. 2gfn
      complexed with cl
      1. region a:4-80 [135101]
    2. 2gfn
      automatically matched to 2GFN A:4-80
      complexed with cl
      1. region b:7-80 [135103]
20. Putative transcriptional regulator Rha04620 [140195]
  1. Rhodococcus sp. rha1 [TaxId: 101510] [140196] (1)
    1. 2g7g
      complexed with acy
      1. region a:9-73 [134732]
21. Hemolysin II regulatory protein, HlyIIR [140197]
  1. Bacillus cereus [TaxId: 1396] [140198] (1)
    SQ Q7X506 4-76
    1. 2fx0
      1. region a:4-76 [134269]
22. Putative transcriptional regulator SCO7704 [140199]
  1. Streptomyces coelicolor [TaxId: 1902] [140200] (1)
    SQ Q93JG8 16-83
    1. 2g7l
      1. region a:16-83 [134734]
23. Probable transcriptional regulator PA1836 [140201]
  1. Pseudomonas aeruginosa [TaxId: 287] [140202] (1)
    SQ Q9I2Q9 6-75
    1. 2gen
      1. region a:6-75 [135062]
24. Putative regulator SCO4008 [140203]
  1. Streptomyces coelicolor [TaxId: 1902] [140204] (2)
    SQ Q9ADP7 7-74
    1. 2d6y
      complexed with tla
      1. region a:7-74 [131313]
    2. 2d6y
      automatically matched to 2D6Y A:7-74
      complexed with tla
      1. region b:7-74 [131315]
25. Transcriptional regulator PsrA [140205]
  1. Pseudomonas aeruginosa [TaxId: 287] [140206] (1)
    SQ Q9HZJ9 2-80
    1. 2fbq
      1. region a:2-80 [133256]
26. Putative transcriptional regulator SCO0857 [140207]
  1. Streptomyces coelicolor [TaxId: 1902] [140208] (2)
    SQ Q9RCV4 35-99
    1. 2np3
      1. region a:35-99 [138420]
    2. 2np3
      automatically matched to 2NP3 A:35-99
      1. region b:35-99 [138422]
27. Transcriptional regulator TM1030 [140209]
  1. Thermotoga maritima [TaxId: 2336] [140210] (5)
    SQ Q9X0C0 1-75! SQ Q9X0C0 2-75
    1. 2id6
      automatically matched to d1z77a1
      complexed with edo
      1. region a:1-75 [147624]
    2. 2iek
      automatically matched to d1z77a1
      complexed with p2k
      1. region a:2-75 [147647]
    3. 1z77
      complexed with edo
      1. region a:1-75 [124588]
    4. 1zkg
      complexed with unl
      1. region a:2-75 [125194]
    5. 1zkg
      automatically matched to 1ZKG A:2-75
      complexed with unl
      1. region b:2-75 [125196]
28. Putative transcriptional regulator Atu0279 [140211]
  1. Agrobacterium tumefaciens [TaxId: 358] [140212] (1)
    SQ Q8UIL4 3-76
    1. 2g7s
      1. region a:3-76 [134737]
29. Transcriptional activator DhaS [158248]
  1. Lactococcus lactis [TaxId: 1358] [158249] (2)
    SQ Q9CIV9 8-78
    1. 2iu5
      mutant
      1. region a:1-71 [147801]
    2. 2iu5
      automatically matched to 2IU5 A:1-71
      mutant
      1. region b:4-71 [147803]
30. Putative transcriptional regulator SCO4940 [158250]
  1. Streptomyces coelicolor [TaxId: 1902] [158251] (1)
    SQ Q8CJS4 8-82
    1. 2hyj
      complexed with ca, so4
      1. region a:8-82 [147456]
31. Putative transcriptional regulator RHA1_ro03468 [158252]
  1. Rhodococcus sp. RHA1 [TaxId: 101510] [158253] (2)
    SQ Q0SB15 18-87
    1. 2hku
      complexed with edo, pg4
      1. region a:18-87 [147302]
    2. 2hku
      automatically matched to 2HKU A:18-87
      complexed with edo, pg4
      1. region b:19-87 [147304]
32. Putative regulatory protein Sco4313 [158254]
  1. Streptomyces coelicolor [TaxId: 1902] [158255] (1)
    SQ Q9KXS8 8-86
    1. 2oi8
      1. region a:8-86 [148778]
33. Transcriptional regulator Cgl1640/Cg1846 [158256]
  1. Corynebacterium glutamicum [TaxId: 1718] [158257] (1)
    SQ Q8NQ14 1-78
    1. 2o7t
      complexed with unl
      1. region a:1-78 [148670]
34. Putative transcriptional regulator SCO4850 [158258]
  1. Streptomyces coelicolor [TaxId: 1902] [158259] (1)
    SQ Q9KZ96 15-89
    1. 3c07
      complexed with so4
      1. region a:15-89 [155807]
Middle operon regulator, Mor [109659] (1)
contains extra N-terminal dimerisation subdomain: alpha-hairpin (27-72) dimer is a four-helical bundle with right-handed twist
1. Middle operon regulator, Mor [109660]
  1. Bacteriophage Mu [TaxId: 10677] [109661] (1)
    SQ P23848 27-120
    1. 1rr7
      complexed with pt
      1. chain a [105075]
Psq domain [140213] (1)
Pfam 05225
1. Ligand-dependent corepressor (LCoR) [140214]
  1. Human (Homo sapiens) [TaxId: 9606] [140215] (1)
    SQ Q96JN0 343-405
    1. 2cob
      1. region a:8-70 [130673]
Alr1493-like [140216] (1)
Pfam 04255; DUF433; contains extra C-terminal helix and N-terminal dimerisation interlock subdomain (scop_cf 47405)
1. Hypothetical protein Ava_0674 (Alr1493 orthologue) [140217]
  1. Anabaena variabilis [TaxId: 1172] [140218] (2)
    SQ Q3MFD8 1-102
    1. 2ga1
      complexed with gol
      1. region a:1-102 [134850]
    2. 2ga1
      automatically matched to 2GA1 A:1-102
      complexed with gol
      1. region b:1-101 [134851]
Nanomeric phage protein-like [140219] (1)
contains additional N and C-terminal helices and the C-terminal beta-strand forming an intersubunit beta-barrel with a channel
1. Phage protein BC1890 [140220]
  1. Bacillus cereus [TaxId: 1396] [140221] (6)
    SQ Q81ES4 13-132
    host bacterium
    1. 2ao9
      1. region a:13-132 [127069]
    2. 2ao9
      automatically matched to 2AO9 A:13-132
      1. region b:14-131 [127070]
    3. 2ao9
      automatically matched to 2AO9 A:13-132
      1. region c:14-132 [127071]
    4. 2ao9
      automatically matched to 2AO9 A:13-132
      1. region e:14-132 [127072]
    5. 2ao9
      automatically matched to 2AO9 A:13-132
      1. region f:16-131 [127073]
    6. 2ao9
      automatically matched to 2AO9 A:13-132
      1. region h:15-130 [127074]
SWIRM domain [140222] (3)
Pfam 04433; contains extra N-terminal helix
1. Transcription regulatory protein swi3 [140223]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140224] (1)
    SQ P32591 311-395
    1. 2fq3
      1. region a:311-395 [133936]
2. Transcriptional adaptor 2-like, TADA2L [140225]
  1. Mouse (Mus musculus) [TaxId: 10090] [140226] (3)
    SQ Q8CHV6 343-443! SQ Q8CHV6 355-443
    1. 2cuj
      1. region a:8-108 [130812]
    2. 2aqe
      1. region a:2-90 [127179]
    3. 2aqf
      automatically matched to 2AQE A:2-90
      1. region a:2-90 [127180]
3. Lysine-specific histone demethylase 1, LSD1 [140227]
  1. Human (Homo sapiens) [TaxId: 9606] [140228] (9)
    SQ O60341 169-279
    1. 2dw4
      automatically matched to 2IW5 A:171-273
      complexed with fad
      1. region a:172-273 [146594]
    2. 2z3y
      automatically matched to 2IW5 A:171-273
      complexed with f2n
      1. region a:172-273 [154024]
    3. 2z5u
      automatically matched to 2IW5 A:171-273
      complexed with fa9
      1. region a:172-273 [154167]
    4. 2iw5
      complexed with cl, fad, gol, nh4
      1. region a:171-273 [145539]
    5. 2ejr
      automatically matched to 2IW5 A:171-273
      complexed with f2n
      1. region a:172-273 [146877]
    6. 2uxx
      automatically matched to 2IW5 A:171-273
      complexed with cl, fa9, gol
      1. region a:171-273 [152310]
    7. 2uxn
      automatically matched to 2IW5 A:171-273
      complexed with cl, fda, gol, lyp
      1. region a:173-273 [145760]
    8. 2h94
      automatically matched to 2IW5 A:171-273
      complexed with fad, hg
      1. region a:172-273 [147245]
    9. 2com
      1. region a:8-118 [130679]
Cgl2762-like [158260] (1)
Pfam 01527; Transposase 8
1. Uncharacterized protein Cgl2762 [158261]
  1. Corynebacterium glutamicum [TaxId: 1718] [158262] (1)
    SQ Q8NM20 1-89
    1. 2jn6
      1. region a:1-89 [148144]
RpiR-like [158263] (1)
Pfam 01418; contains two extra helices, one at each termini; overall arrangment of five helices is similar to the helical core of the lambda integrase-like catalytic domain (scop_fa 56350)
1. Putative transcriptional regulator YbbH [158264]
  1. Bacillus subtilis [TaxId: 1423] [158265] (3)
    SQ Q45581 1-83
    1. 2o3f
      complexed with mly, so4
      1. region a:1-83 [148573]
    2. 2o3f
      automatically matched to 2O3F A:1-83
      complexed with mly, so4
      1. region b:2-83 [148574]
    3. 2o3f
      automatically matched to 2O3F A:1-83
      complexed with mly, so4
      1. region c:1-83 [148575]