Structural Classification of Proteins
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Family: Recombinase DNA-binding domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA/RNA-binding 3-helical bundle [46688]
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily: Homeodomain-like [46689]
    consists only of helices
    link to SUPERFAMILY database - Superfamily
  5. Family: Recombinase DNA-binding domain [46728]

Protein Domains:

  1. HIN recombinase (DNA-binding domain) [46729]
    1. Synthetic [46730] (8)
      1. 1ijw picpic
        complexed with bro, trs; mutant
        1. chain c [66171] picpiclink
      2. 1jj6 picpic
        complexed with ido, trs; mutant
        1. chain c [66756] picpiclink
      3. 1jko picpic
        complexed with trs; mutant
        1. chain c [66809] picpiclink
      4. 1jj8 picpic
        complexed with ido; mutant
        1. chain c [66757] picpiclink
      5. 1jkr picpic
        complexed with trs; mutant
        1. chain c [66812] picpiclink
      6. 1jkp picpic
        mutant
        1. chain c [66810] picpiclink
      7. 1jkq picpic
        mutant
        1. chain c [66811] picpiclink
      8. 1hcr picpic
        protein/DNA complex
        1. chain a [16020] picpiclink
  2. gamma,delta resolvase (C-terminal domain) [46731]
    1. Escherichia coli [TaxId: 562] [46732] (11)
      1. 1gdt picpicxref
        protein/DNA complex; mutant
        1. region a:141-183 [16021] picpiclink
        2. region b:141-183 [16022] picpiclink
      2. 1zr4 picpicxrefxrefxrefxref
        automatically matched to d1gdta1
        mutant
        1. region a:141-183 [125517] picpiclink
      3. 1zr4 picpicxrefxrefxrefxref
        automatically matched to d1gdta1
        mutant
        1. region b:141-183 [125519] picpiclink
      4. 1zr4 picpicxrefxrefxrefxref
        automatically matched to d1gdta1
        mutant
        1. region d:141-183 [125521] picpiclink
      5. 1zr4 picpicxrefxrefxrefxref
        automatically matched to d1gdta1
        mutant
        1. region e:141-183 [125523] picpiclink
      6. 2gm4 picpicxrefxref
        automatically matched to d1gdta1
        mutant
        1. region a:141-183 [135360] picpiclink
      7. 2gm4 picpicxrefxref
        automatically matched to d1gdta1
        mutant
        1. region b:141-183 [135362] picpiclink
      8. 1zr2 picpicxrefxref
        automatically matched to d1gdta1
        mutant
        1. region a:141-183 [125509] picpiclink
      9. 1zr2 picpicxrefxref
        automatically matched to d1gdta1
        mutant
        1. region b:141-183 [125511] picpiclink
      10. 1ret picpic
        1. chain a [16024] picpiclink
      11. 1res picpic
        1. chain a [16023] picpiclink
  3. Transposase tc3a1-65 [46733]
    1. Caenorhabditis elegans [TaxId: 6239] [46734] (2)
      SQ P34257 2-104
      1. 1tc3 picpic
        protein/DNA complex; mutant
        1. chain c [16025] picpiclink
      2. 1u78 picpic
        mutant
        1. region a:2-54 [107712] picpiclink
        2. region a:55-104 [107713] picpiclink
  4. Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase [46735]
    contains additional helix at each terminus
    1. Bacteriophage mu [TaxId: 10677] [46736] (2)
      1. 2ezl picpic
        1. chain a [16026] picpiclink
      2. 2ezk picpic
        1. chain a [16027] picpiclink
  5. Transposase [46737]
    1. Bacteriophage mu [TaxId: 10677] [46738] (2)
      1. 2ezi picpic
        1. chain a [16028] picpiclink
      2. 2ezh picpic
        1. chain a [16029] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk