Superfamily: RNA polymerase subunit RPB10

uperfamily

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: DNA/RNA-binding 3-helical bundle [46688]
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
4. Superfamily: RNA polymerase subunit RPB10 [46924]
   uperfamily

Families:

1. RNA polymerase subunit RPB10 [46925] (2)
   Zn-binding site is near the N-terminus
   1. RNA polymerase subunit RPB10 [46926]
      1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [46927] (1)
         1. 1ef4
            complexed with zn
            1. chain a [16272]
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [63490] (30)
         SQ P22139; part of multichain biological unit
         1. 1twf
            complexed with mn, utp, zn
            1. chain j [112735]
         2. 1i50
            complexed with mn, zn
            1. chain j [61764]
         3. 1k83
            complexed with ilx, mn, trx, zn
            1. chain j [68285]
         4. 3cqz
            automatically matched to d1i3qj_
            complexed with ilx, trx, zn
            1. region j:1-65 [156933]
         5. 1i3q
            complexed with mg, zn
            1. chain j [61617]
         6. 2nvq
            automatically matched to d1i3qj_
            complexed with dut, mg, zn
            1. region j:1-65 [138644]
         7. 1twc
            complexed with gtp, mn, zn
            1. chain j [112721]
         8. 1twa
            complexed with atp, mn, zn
            1. chain j [112706]
         9. 1i6h
            complexed with mg, zn
            1. chain j [61841]
         10. 1twh
             complexed with atp, mn, zn
             1. chain j [112761]
         11. 2r7z
             automatically matched to d1i3qj_
             complexed with cpt, mg, zn
             1. region j:1-65 [151664]
         12. 2r92
             automatically matched to d1i3qj_
             complexed with mg, zn
             1. region j:1-65 [151751]
         13. 1twg
             complexed with ctp, mn, zn
             1. chain j [112748]
         14. 2nvy
             automatically matched to d1i3qj_
             complexed with mn, zn
             1. region j:1-65 [138690]
         15. 2r93
             automatically matched to d1i3qj_
             complexed with mg, zn
             1. region j:1-65 [151760]
         16. 2e2i
             automatically matched to d1i3qj_
             complexed with dgt, mg, zn
             1. region j:1-65 [132004]
         17. 2vum
             automatically matched to d1i3qj_
             complexed with bru, ilx, mg, trx, zn
             1. region j:1-65 [153554]
         18. 2e2j
             automatically matched to d1i3qj_
             complexed with g2p, mg, zn
             1. region j:1-65 [132017]
         19. 2b63
             automatically matched to d1i3qj_
             complexed with 5bu, mg, zn
             1. region j:1-65 [127929]
         20. 2ja7
             automatically matched to d1i3qj_
             complexed with bru, mg, tt, zn
             1. region j:1-65 [138203]
         21. 2ja7
             automatically matched to d1i3qj_
             complexed with bru, mg, tt, zn
             1. region v:1-65 [138219]
         22. 2nvx
             automatically matched to d1i3qj_
             complexed with dut, mg, zn
             1. region j:1-65 [138677]
         23. 2nvt
             automatically matched to d1i3qj_
             complexed with g2p, mg, zn
             1. region j:1-65 [138657]
         24. 2ja5
             automatically matched to d1i3qj_
             complexed with bru, mg, zn
             1. region j:1-65 [138171]
         25. 2ja8
             automatically matched to d1i3qj_
             complexed with bru, mg, tt, zn
             1. region j:1-65 [138235]
         26. 2b8k
             automatically matched to d1i3qj_
             complexed with zn
             1. region j:1-65 [128089]
         27. 2ja6
             automatically matched to d1i3qj_
             complexed with bru, mg, tt, zn
             1. region j:1-65 [138187]
         28. 2yu9
             automatically matched to d1i3qj_
             complexed with mg, utp, zn
             1. region j:1-65 [140074]
         29. 2e2h
             automatically matched to d1i3qj_
             complexed with gtp, mg, zn
             1. region j:1-65 [131991]
         30. 2nvz
             automatically matched to d1i3qj_
             complexed with mg, utp, zn
             1. region j:1-65 [138703]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk