Structural Classification of Proteins
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Family: YlxM/p13-like

Pfam 04297; UPF0122
structural and detectable sequence similarity to Sigma4 domain; contains extra C-terminal all-alpha oligomerization subdomain; forms different, helix-swapped dimers

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA/RNA-binding 3-helical bundle [46688]
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659]
    link to SUPERFAMILY database - Superfamily
  5. Family: YlxM/p13-like [109706]
    Pfam 04297; UPF0122
    structural and detectable sequence similarity to Sigma4 domain; contains extra C-terminal all-alpha oligomerization subdomain; forms different, helix-swapped dimers

Protein Domains:

  1. Hypothetical protein SPy1201 [109707]
    1. Streptococcus pyogenes [TaxId: 1314] [109708] (1)
      SQ P67253
      1. 1s7o picpic
        Structural genomics target
        1. chain a [105354] picpiclink
        2. chain b [105355] picpiclink
        3. chain c [105356] picpiclink
  2. Hypothetical protein SAV1236 [116818]
    1. Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280] [116819] (1)
      SQ P67248
      1. 1xsv picpic
        1. chain a [116003] picpiclink
        2. chain b [116004] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk