Structural Classification of Proteins
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Family: CAP C-terminal domain-like

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA/RNA-binding 3-helical bundle [46688]
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily: "Winged helix" DNA-binding domain [46785]
    contains a small beta-sheet (wing)
    link to SUPERFAMILY database - Superfamily
  5. Family: CAP C-terminal domain-like [46796]

Protein Domains:

  1. Catabolite gene activator protein (CAP), C-terminal domain [46797]
    N-terminal domain has double beta-helix fold
    1. Escherichia coli [TaxId: 562] [46798] (26)
      1. 1i5z picpicxref
        complexed with cmp, trs
        1. region a:138-206 [83669] picpiclink
        2. region b:138-207 [83671] picpiclink
      2. 1zrf picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp, dio
        1. region a:138-207 [125543] picpiclink
      3. 1zrf picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp, dio
        1. region b:138-207 [125545] picpiclink
      4. 1g6n picpicxref
        complexed with cmp
        1. region a:138-206 [16100] picpiclink
        2. region b:438-507 [16101] picpiclink
      5. 1hw5 picpicxref
        complexed with cmp; mutant
        1. region a:138-208 [16098] picpiclink
        2. region b:138-205 [16099] picpiclink
      6. 1i6x picpicxref
        complexed with cmp, trs; mutant
        1. region a:138-206 [83673] picpiclink
        2. region b:138-207 [83675] picpiclink
      7. 2cgp picpicxref
        protein/DNA complex; complexed with cmp
        1. region a:138-207 [16102] picpiclink
      8. 2gzw picpicxrefxrefxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region a:138-206 [135917] picpiclink
      9. 2gzw picpicxrefxrefxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region b:138-203 [135919] picpiclink
      10. 2gzw picpicxrefxrefxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region c:138-206 [135921] picpiclink
      11. 2gzw picpicxrefxrefxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region d:138-207 [135923] picpiclink
      12. 1j59 picpicxref
        complexed with cmp
        1. region a:138-207 [71532] picpiclink
        2. region b:138-205 [71534] picpiclink
      13. 1zre picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region a:138-207 [125539] picpiclink
      14. 1zre picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region b:138-207 [125541] picpiclink
      15. 1zrc picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region a:138-207 [125531] picpiclink
      16. 1zrc picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region b:138-207 [125533] picpiclink
      17. 1zrd picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region a:138-207 [125535] picpiclink
      18. 1zrd picpicxrefxref
        automatically matched to d1lb2a1
        complexed with cmp
        1. region b:138-207 [125537] picpiclink
      19. 1o3r picpicxref
        complexed with cmp
        1. region a:138-207 [86607] picpiclink
      20. 1run picpicxref
        protein/DNA complex; complexed with cmp
        1. region a:138-209 [16103] picpiclink
        2. region b:138-205 [16104] picpiclink
      21. 1lb2 picpicxrefxref
        complexed with cmp
        1. region a:138-209 [77869] picpiclink
      22. 1o3q picpicxref
        complexed with cmp
        1. region a:138-207 [86605] picpiclink
      23. 1o3s picpicxref
        complexed with cmp; mutant
        1. region a:138-207 [86609] picpiclink
      24. 1ruo picpicxref
        protein/DNA complex; complexed with cmp; mutant
        1. region a:138-206 [16105] picpiclink
        2. region b:138-209 [16106] picpiclink
      25. 1cgp picpicxref
        protein/DNA complex; complexed with cmp
        1. region a:138-205 [16096] picpiclink
        2. region b:138-205 [16097] picpiclink
      26. 1o3t picpicxref
        complexed with cmp
        1. region a:138-207 [86611] picpiclink
        2. region b:138-205 [86613] picpiclink
  2. CO-sensing protein CooA, C-terminal domain [46799]
    1. Rhodospirillum rubrum [TaxId: 1085] [46800] (1)
      1. 1ft9 picpicxref
        complexed with hem
        1. region a:134-213 [16107] picpiclink
        2. region b:134-213 [16108] picpiclink
  3. Listeriolysin regulatory protein PrfA, C-terminal domain [88975]
    1. Bacteria (Listeria monocytogenes) [TaxId: 1639] [88976] (11)
      1. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region a:138-237 [128458] picpiclink
      2. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region b:138-237 [128460] picpiclink
      3. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region d:138-237 [128462] picpiclink
      4. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region e:138-237 [128464] picpiclink
      5. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region f:138-237 [128466] picpiclink
      6. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region g:138-237 [128468] picpiclink
      7. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region h:138-235 [128470] picpiclink
      8. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1omia2
        complexed with dtt, dtu; mutant
        1. region i:138-237 [128472] picpiclink
      9. 2beo picpicxrefxref
        automatically matched to d1omia2
        complexed with acm, cl, gln, pg4
        1. region a:138-237 [128381] picpiclink
      10. 2beo picpicxrefxref
        automatically matched to d1omia2
        complexed with acm, cl, gln, pg4
        1. region b:138-237 [128383] picpiclink
      11. 1omi picpicxref
        complexed with gol
        1. region a:1138-1237 [87080] picpiclink
        2. region b:2138-2237 [87082] picpiclink
  4. Transcriptional regulator PG0396, C-terminal domain [140229]
    1. Porphyromonas gingivalis [TaxId: 837] [140230] (1)
      SQ Q7MAW7 152-232
      1. 2gau picpicxref
        1. region a:152-232 [134894] picpiclink
  5. Probable transcription regulator BT4300, C-terminal domain [140231]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [140232] (1)
      SQ Q89ZS6 148-220
      1. 1zyb picpicxref
        complexed with gol
        1. region a:148-220 [125815] picpiclink
  6. Transcriptional regulator TTHA1359, C-terminal domain [140233]
    1. Thermus thermophilus [TaxId: 274] [140234] (1)
      SQ Q5SIL0 118-199
      1. 2coh picpicxref
        complexed with mpd
        1. region a:118-199 [130677] picpiclink
  7. Cyclic AMP receptor-like protein Vfr [158266]
    1. Pseudomonas aeruginosa [TaxId: 287] [158267] (1)
      SQ P55222 143-213
      1. 2oz6 picpicxref
        complexed with cmp
        1. region a:143-213 [149103] picpiclink
  8. Chlorophenol reduction protein CprK [158268]
    1. Desulfitobacterium dehalogenans [TaxId: 36854] [158269] (2)
      SQ Q9LAS2 148-226
      1. 2h6c picpicxrefxref
        1. region a:148-226 [147232] picpiclink
      2. 2h6c picpicxrefxref
        automatically matched to 2H6C A:148-226
        1. region b:148-226 [147234] picpiclink
    2. Desulfitobacterium hafniense [TaxId: 49338] [158270] (7)
      SQ Q18R04 148-227! SQ Q18R04 148-229
      1. 3e5u picpicxrefxrefxrefxref
        complexed with 3c4, na, po4; mutant
        1. region a:148-227 [158022] picpiclink
      2. 3e5u picpicxrefxrefxrefxref
        automatically matched to 3E5U A:148-227
        complexed with 3c4, na, po4; mutant
        1. region b:148-226 [158024] picpiclink
      3. 3e5u picpicxrefxrefxrefxref
        automatically matched to 3E5U A:148-227
        complexed with 3c4, na, po4; mutant
        1. region c:148-227 [158026] picpiclink
      4. 3e5u picpicxrefxrefxrefxref
        automatically matched to 3E5U A:148-227
        complexed with 3c4, na, po4; mutant
        1. region d:148-227 [158028] picpiclink
      5. 3e6c picpicxref
        automatically matched to 3E5U A:148-227
        complexed with 3c4; mutant
        1. region c:148-227 [158038] picpiclink
      6. 2h6b picpicxrefxref
        complexed with 3c4, so4
        1. region a:148-229 [147228] picpiclink
      7. 2h6b picpicxrefxref
        automatically matched to 2H6B A:148-229
        complexed with 3c4, so4
        1. region b:148-229 [147230] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk