Structural Classification of Proteins
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Family: Vacuolar sorting protein domain

duplication: tandem repeat of two "winged-helix" domains

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA/RNA-binding 3-helical bundle [46688]
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily: "Winged helix" DNA-binding domain [46785]
    contains a small beta-sheet (wing)
    link to SUPERFAMILY database - Superfamily
  5. Family: Vacuolar sorting protein domain [109692]
    duplication: tandem repeat of two "winged-helix" domains

Protein Domains:

  1. Vacuolar sorting protein SNF8 [109693]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109694] (2)
      SQ Q12483 20-232
      1. 1u5t picpicxrefxref
        1. region a:20-164 [107684] picpiclink
        2. region a:165-232 [107685] picpiclink
      2. 1w7p picpicxrefxref
        1. region a:20-164 [114319] picpiclink
        2. region a:165-232 [114320] picpiclink
  2. Vacuolar protein sorting-associated protein VPS36 [109695]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109696] (2)
      SQ Q06696 396-566
      1. 1u5t picpicxrefxref
        1. region b:396-489 [107686] picpiclink
        2. region b:490-564 [107687] picpiclink
      2. 1w7p picpicxrefxref
        1. region d:396-449 [114325] picpiclink
        2. region d:450-566 [114326] picpiclink
  3. Vacuolar protein sorting-associated protein VPS25 [109697]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109698] (10)
      SQ P47142
      1. 1xb4 picpic
        automatically matched to d1u5tc1
        1. region a:2-125 [121832] picpiclink
      2. 1xb4 picpic
        automatically matched to d1u5tc2
        1. region a:126-199 [121833] picpiclink
      3. 1xb4 picpic
        automatically matched to d1u5tc1
        1. region b:2-125 [121834] picpiclink
      4. 1xb4 picpic
        automatically matched to d1u5tc2
        1. region b:126-199 [121835] picpiclink
      5. 1xb4 picpic
        automatically matched to d1u5tc1
        1. region c:3-125 [121836] picpiclink
      6. 1xb4 picpic
        automatically matched to d1u5tc2
        1. region c:126-199 [121837] picpiclink
      7. 1xb4 picpic
        automatically matched to d1u5tc1
        1. region d:2-125 [121838] picpiclink
      8. 1xb4 picpic
        automatically matched to d1u5tc2
        1. region d:126-199 [121839] picpiclink
      9. 1u5t picpicxrefxref
        1. region c:2-125 [107688] picpiclink
        2. region c:126-199 [107689] picpiclink
        3. region d:2-125 [107690] picpiclink
        4. region d:126-199 [107691] picpiclink
      10. 1w7p picpicxrefxref
        1. region b:1-125 [114321] picpiclink
        2. region b:126-199 [114322] picpiclink
        3. region c:1-125 [114323] picpiclink
        4. region c:126-199 [114324] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk