Class: Peptides

Peptides and fragments. Not a true class

Lineage:

1. Root: scop
2. Class: Peptides [58231]
   Peptides and fragments. Not a true class

Folds:

1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1)
   1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58233] (2)
      uperfamily
2. Lantibiotic peptides [58243] (1)
   peptide antibiotic
   1. Lantibiotic peptides [58244] (3)
      uperfamily
3. Leucocin-like bacteriocin [100898] (1)
   consists of a conserved, disulfide-containing N-terminal region (forming a beta-sheet) and a C-terminal helix
   1. Leucocin-like bacteriocin [100899] (1)
      uperfamily
4. Antimicrobial beta-hairpin [58251] (1)
   contains beta-hairpin crosslinked by disulfide bridge(s)
   1. Antimicrobial beta-hairpin [58252] (8)
      not a true superfamily
      uperfamily
5. Antimicrobial helix [58268] (1)
   antibiotic peptide
   1. Antimicrobial helix [58269] (5)
      not a true superfamily
      uperfamily
6. Macrocyclic bacteriocins [58278] (1)
   macrocyclic antimicrobial peptide; bacteriocin
   1. Macrocyclic bacteriocins [58279] (2)
      uperfamily
7. Peptide hormones [58283] (1)
   contains one alpha-helix
   1. Peptide hormones [58284] (1)
      this is not a true superfamily
      uperfamily
8. Angiotensin [90269] (1)
   1. Angiotensin [90270] (1)
      uperfamily
9. delta toxin-like [58307] (3)
   single alpha helix
   1. delta-Toxin [58308] (1)
      uperfamily
   2. Antimicrobial peptide HP(2-20) [90276] (1)
      uperfamily
   3. Anticancer peptides [118391] (1)
      uperfamily
10. PSP1-like [58312] (1)
    1. PSP1-like [58313] (1)
       uperfamily
11. Arg-rich RNA binding peptides [58321] (7)
    1. 30S ribosomal protein THX [58322] (1)
       uperfamily
    2. HIV-1 REV fragments [58326] (1)
       uperfamily
    3. RSG-1.2 peptide [58330] (1)
       uperfamily
    4. TAT peptides [58334] (1)
       uperfamily
    5. Box B RNA-binding N peptide [58339] (1)
       uperfamily
    6. HTLV-1 peptide [58344] (1)
       uperfamily
    7. Ilarvirus coat protein N-terminal fragment [118396] (1)
       uperfamily
12. DNA-binding domains of HMG-I(Y) [58348] (1)
    1. DNA-binding domains of HMG-I(Y) [58349] (1)
       uperfamily
13. VPR protein fragments [58353] (1)
    1. VPR protein fragments [58354] (1)
       uperfamily
14. Inactivation gate of potassium and sodium channels [58358] (1)
    1. Inactivation gate of potassium and sodium channels [58359] (1)
       uperfamily
15. Coagulation factor VIII, membrane-binding peptide [58368] (1)
    1. Coagulation factor VIII, membrane-binding peptide [58369] (1)
       uperfamily
16. Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1)
    1. Phosphocholine cytidylyltransferase membrane-binding peptides [58374] (1)
       uperfamily
17. Parathyroid hormone fragments (residues between 1 and 39) [58378] (1)
    1. Parathyroid hormone fragments (residues between 1 and 39) [58379] (1)
       uperfamily
18. Corticotropin releasing hormone [58384] (1)
    1. Corticotropin releasing hormone [58385] (1)
       uperfamily
19. Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1)
    1. Liposaccharide-binding protein CAP18 (residues 106-137) [58390] (1)
       uperfamily
20. Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1)
    1. Polymorphic antigen SPAM-H1 (residues 90-127) [58395] (1)
       uperfamily
21. Insect toxins [58399] (1)
    1. Insect toxins [58400] (2)
       uperfamily
22. Tertiapin [58404] (1)
    small disulfide-rich peptide
    1. Tertiapin [58405] (1)
       uperfamily
23. Antifreeze polypeptide HPLC-6 [58409] (1)
    1. Antifreeze polypeptide HPLC-6 [58410] (1)
       uperfamily
24. Troponin I fragments [58414] (1)
    1. Troponin I fragments [58415] (1)
       uperfamily
25. Pilin fragments [58420] (1)
    1. Pilin fragments [58421] (1)
       uperfamily
26. RP71935 [58427] (1)
    1. RP71935 [58428] (1)
       uperfamily
27. Atrial natriuretic peptide [58432] (1)
    1. Atrial natriuretic peptide [58433] (1)
       uperfamily
28. Compstatin [58437] (1)
    1. Compstatin [58438] (1)
       uperfamily
29. Membrane-bound antimicrobial peptides [58442] (1)
    1. Membrane-bound antimicrobial peptides [58443] (1)
       uperfamily
30. Endothelin-like [58449] (1)
    small disulfide-rich
    1. Endothelin-like [58450] (1)
       uperfamily
31. Heat-stable enterotoxin (HSE) [58457] (1)
    1. Heat-stable enterotoxin (HSE) [58458] (1)
       uperfamily
32. Conotoxins [58464] (1)
    disulfide-rich fold
    1. Conotoxins [58465] (7)
       all apart omega class; it is not a true superfamily
       uperfamily
33. Conantokin [58494] (1)
    1. Conantokin [58495] (2)
       gamma-carboxyglutamic acid (GLA)-rich peptide; active conformation may be stabilized by metal ions
       uperfamily
34. Contryphan-R [58502] (1)
    1. Contryphan-R [58503] (1)
       uperfamily
35. Kappa-hefutoxin-like [58507] (2)
    hairpin of two short helices crosslinked with two disulfides
    1. Immunodominant region of protein G of BRSV [58508] (1)
       uperfamily
    2. Potassium channel toxins [75739] (1)
       uperfamily
36. Penaeidin-3a [103726] (1)
    1. Penaeidin-3a [103727] (1)
       uperfamily
37. Bradykinin [58512] (1)
    1. Bradykinin [58513] (1)
       uperfamily
38. Transmembrane helical fragments [58517] (1)
    1. Transmembrane helical fragments [58518] (1)
       uperfamily
39. Topogenic peptides [58555] (4)
    1. Ferredoxin chloroplastic transit peptide [58556] (1)
       uperfamily
    2. Vacuolar targeting peptide from NA-PROPI (residues 29-54) [58560] (1)
       uperfamily
    3. Microcin leader peptide [58564] (1)
       uperfamily
    4. ATP synthase beta chain, mitochondrial prepeptide [103737] (1)
       uperfamily
40. Phospholamban fragments [58568] (1)
    1. Phospholamban fragments [58569] (1)
       uperfamily
41. Influenza hemagglutinin fragments [64631] (1)
    1. Influenza hemagglutinin fragments [64632] (1)
       uperfamily
42. Fragments of bowman-birk inhibitor [58574] (1)
    1. Fragments of bowman-birk inhibitor [58575] (1)
       uperfamily
43. Fragments of apolipoproteins [58579] (1)
    1. Fragments of apolipoproteins [58580] (1)
       uperfamily
44. Transactivation protein TAT [58593] (1)
    1. Transactivation protein TAT [58594] (1)
       uperfamily
45. Proline pipe [58599] (1)
    1. Proline pipe [58600] (1)
       uperfamily
46. Amyloid peptides [58604] (1)
    1. Amyloid peptides [58605] (1)
       uperfamily
47. Gelsolin fragment (residues 150-169) [58609] (1)
    1. Gelsolin fragment (residues 150-169) [58610] (1)
       uperfamily
48. Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1)
    1. Acetylcholine receptor fragment (residues alpha 67-76) [58615] (1)
       uperfamily
49. Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1)
    1. Thrombomodulin EGF domain fragment (residues 409-426) [58620] (1)
       uperfamily
50. C-terminal fragment of thermolysin [63387] (1)
    1. C-terminal fragment of thermolysin [63388] (1)
       uperfamily
51. Capsid protein major homology region peptide analog [58629] (1)
    1. Capsid protein major homology region peptide analog [58630] (1)
       uperfamily
52. CD4 and CD8 receptor regions [58635] (1)
    1. CD4 and CD8 receptor regions [58636] (1)
       uperfamily
53. Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103748] (1)
    1. Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103749] (1)
       uperfamily
54. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1)
    1. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58641] (1)
       uperfamily
55. GroES fragments [58645] (1)
    1. GroES fragments [58646] (1)
       uperfamily
56. cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1)
    1. cAMP and cGMP phosphodiesterase (PDE) fragments [58651] (1)
       uperfamily
57. HIV-1 Nef protein fragments [58657] (1)
    1. HIV-1 Nef protein fragments [58658] (1)
       uperfamily
58. HIV-1 envelope gp120 protein fragments [58662] (1)
    1. HIV-1 envelope gp120 protein fragments [58663] (1)
       uperfamily
59. HIV-1 gp41 fragments [70010] (1)
    1. HIV-1 gp41 fragments [70011] (1)
       uperfamily
60. Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1)
    1. Hepatitis C virus N-terminal capsid protein fragment 2-45 [58668] (1)
       uperfamily
61. P27(KIP1) fragment 22-106 [58672] (1)
    1. P27(KIP1) fragment 22-106 [58673] (1)
       uperfamily
62. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1)
    1. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58678] (1)
       uperfamily
63. Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90290] (1)
    1. Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90291] (1)
       uperfamily
64. alpha-lactalbumin peptide model [58682] (1)
    1. alpha-lactalbumin peptide model [58683] (1)
       uperfamily
65. Coat protein-binding domain of bacteriophage P22 scaffolding protein [58687] (1)
    1. Coat protein-binding domain of bacteriophage P22 scaffolding protein [58688] (1)
       uperfamily
66. Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1)
    1. Immunoreceptor tyrosine kinase activation motif, ITAM [58693] (1)
       uperfamily
67. Integrin fragments [58697] (1)
    1. Integrin fragments [58698] (1)
       uperfamily
68. Human glutathione reductase (HGR) inhibitor [58702] (1)
    1. Human glutathione reductase (HGR) inhibitor [58703] (1)
       uperfamily
69. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1)
    1. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58708] (1)
       uperfamily
70. Histone H3 C-terminal fragment 130-135 [58712] (1)
    1. Histone H3 C-terminal fragment 130-135 [58713] (1)
       uperfamily
71. Smad-binding domain of Sara [58717] (1)
    1. Smad-binding domain of Sara [58718] (1)
       uperfamily
72. Transactivation domain [81275] (1)
    1. Transactivation domain [74800] (1)
       uperfamily
73. Nuclear receptor coactivator Src-1 [100901] (1)
    1. Nuclear receptor coactivator Src-1 [48682] (1)
       uperfamily
74. TBP-binding domain of the transcription factor IIIb Brf1 subunit [90297] (1)
    1. TBP-binding domain of the transcription factor IIIb Brf1 subunit [90298] (1)
       uperfamily
75. BRCA2 BRC4 repeat [82985] (1)
    1. BRCA2 BRC4 repeat [82986] (1)
       uperfamily
76. Peptide derived from p-21 activated kinase [58722] (1)
    1. Peptide derived from p-21 activated kinase [58723] (1)
       uperfamily
77. pak1 autoregulatory domain [58728] (1)
    1. pak1 autoregulatory domain [58729] (1)
       uperfamily
78. Translocated intimin receptor (tir) intimin-binding domain [58733] (1)
    1. Translocated intimin receptor (tir) intimin-binding domain [58734] (1)
       uperfamily
79. Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58738] (1)
    1. Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58739] (1)
       uperfamily
80. Tumor suppressor p53 fragments [58743] (1)
    1. Tumor suppressor p53 fragments [58744] (1)
       uperfamily
81. FxFG nucleoporin repeats [58748] (1)
    1. FxFG nucleoporin repeats [58749] (1)
       uperfamily
82. beta-Catenine bound non-globular protein regions [58753] (1)
    1. beta-Catenine bound non-globular protein regions [58754] (1)
       uperfamily
83. Synaptobrevin-II fragments [58758] (1)
    1. Synaptobrevin-II fragments [58759] (1)
       uperfamily
84. VMIP-II fragment [58763] (1)
    1. VMIP-II fragment [58764] (1)
       uperfamily
85. Papillomavirus e6-interacting peptide of e6ap [58768] (1)
    1. Papillomavirus e6-interacting peptide of e6ap [58769] (1)
       uperfamily
86. Isolated insulin B-chain [58773] (1)
    1. Isolated insulin B-chain [58774] (1)
       uperfamily
87. N-terminal hairpin of ubiquitin (residues 1-17) [58778] (1)
    1. N-terminal hairpin of ubiquitin (residues 1-17) [58779] (1)
       uperfamily
88. alpha-helical hairpin of p8mtcp1 [58783] (1)
    1. alpha-helical hairpin of p8mtcp1 [58784] (1)
       uperfamily
89. Syndecan-4 cytoplasmic domain [64638] (1)
    1. Syndecan-4 cytoplasmic domain [64639] (1)
       uperfamily
90. Actin-binding peptides [70017] (1)
    1. Actin-binding peptides [70018] (1)
       uperfamily
91. Pituitary adenylate cyclase activating polypeptide, pacap21 [64643] (1)
    1. Pituitary adenylate cyclase activating polypeptide, pacap21 [64644] (1)
       uperfamily
92. Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70022] (1)
    1. Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70023] (1)
       uperfamily
93. Prepeptide of 5-ALAS [70027] (1)
    1. Prepeptide of 5-ALAS [70028] (1)
       uperfamily
94. Cholecystokinin receptor fragments [64648] (1)
    1. Cholecystokinin receptor fragments [64649] (1)
       uperfamily
95. the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70032] (1)
    1. the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70033] (1)
       uperfamily
96. Trypsin inhibitor SFTIf-1 [64653] (1)
    1. Trypsin inhibitor SFTIf-1 [64654] (1)
       uperfamily
97. Prion protein fragments [70037] (1)
    1. Prion protein fragments [70038] (1)
       uperfamily
98. Tumor suppressor protein p19-ARF fragment [70042] (1)
    1. Tumor suppressor protein p19-ARF fragment [70043] (1)
       uperfamily
99. Antennapedia homeodomain fragments [70047] (1)
    1. Antennapedia homeodomain fragments [70048] (1)
       uperfamily
100. Sheep myeloid antimicrobial peptide SMAP29 based peptides [75751] (1)
     1. Sheep myeloid antimicrobial peptide SMAP29 based peptides [75752] (1)
        uperfamily
101. alpha-2a adrenergic receptor pepride t3-i2 [75756] (1)
     1. alpha-2a adrenergic receptor pepride t3-i2 [75757] (1)
        uperfamily
102. Catestatin fragment from chromogranin A [75761] (1)
     1. Catestatin fragment from chromogranin A [75762] (1)
        uperfamily
103. Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82992] (1)
     1. Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82993] (1)
        uperfamily
104. N-terminal fragment of gastric H/K-ATPase [82997] (1)
     1. N-terminal fragment of gastric H/K-ATPase [82998] (1)
        uperfamily
105. Barstar fragment [83002] (1)
     1. Barstar fragment [83003] (1)
        uperfamily
106. Cannabinoid receptor 1 (CB1) fragment [83007] (1)
     1. Cannabinoid receptor 1 (CB1) fragment [83008] (1)
        uperfamily
107. Ribosomal protein L10 [64658] (1)
     1. Ribosomal protein L10 [64659] (1)
        uperfamily
108. Ubiquitin interacting motif (UIM) [90302] (1)
     1. Ubiquitin interacting motif (UIM) [90303] (1)
        uperfamily
109. Metal-binding peptide from MerP [103758] (1)
     1. Metal-binding peptide from MerP [103759] (1)
        uperfamily
110. Marinostatin, MstI [103763] (1)
     1. Marinostatin, MstI [103764] (1)
        uperfamily
111. Cross-reactive peptides from 60S acidic ribosomal protein p2 [103768] (1)
     1. Cross-reactive peptides from 60S acidic ribosomal protein p2 [103769] (1)
        uperfamily
112. NTR, cyclotide processing element [111516] (1)
     1. NTR, cyclotide processing element [111517] (1)
        uperfamily
113. HMG-box transcription factor 1 fragments [111523] (1)
     1. HMG-box transcription factor 1 fragments [111524] (1)
        uperfamily
114. MAD protein fragments [111528] (1)
     1. MAD protein fragments [111529] (1)
        uperfamily
115. Fragments of TNF receptors [111533] (1)
     1. Fragments of TNF receptors [111534] (1)
        uperfamily
116. Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111538] (1)
     1. Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111539] (1)
        uperfamily
117. Ribosomal protein L34p [144320] (1)
     non-globular, mainly alpha-helical
     1. Ribosomal protein L34p [144321] (1)
        uperfamily
118. Ribosomal protein S21p [161307] (1)
     non-globular, mainly alpha-helical
     1. Ribosomal protein S21p [161308] (1)
119. Retinoblastoma-associated protein RB1 fragments [144325] (1)
     1. Retinoblastoma-associated protein RB1 fragments [144326] (1)
        uperfamily
120. Genome linked protein vpg [144330] (1)
     1. Genome linked protein vpg [144331] (1)
        uperfamily
121. Programmed cell death protein 5 fragments [144335] (1)
     1. Programmed cell death protein 5 fragments [144336] (1)
        uperfamily

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk