Structural Classification of Proteins
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Fold: Arg-rich RNA binding peptides

Lineage:

  1. Root: scop
  2. Class: Peptides [58231]
    Peptides and fragments. Not a true class
  3. Fold: Arg-rich RNA binding peptides [58321]

Superfamilies:

  1. 30S ribosomal protein THX [58322] (1)
    link to SUPERFAMILY database - Superfamily
    1. 30S ribosomal protein THX [58323] (1)
      1. 30S ribosomal protein THX [58324]
        1. Thermus thermophilus [TaxId: 274] [58325] (44)
          SQ P62612
          1. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 6mz, cm0, k, mg, par, zn
            1. region u:2-25 [145756] picpiclink
          2. 2vqe picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with k, mg, par, tm2, zn
            1. region u:2-25 [153445] picpiclink
          3. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, scm, sry, zn
            1. chain v [46116] picpiclink
          4. 2vqf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with k, mg, par, tm2, zn
            1. region u:2-25 [153464] picpiclink
          5. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with unx, zn
            1. chain v [71564] picpiclink
          6. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with k, mg, par, zn
            1. region u:2-25 [145759] picpiclink
          7. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, t6a, zn
            1. chain v [115550] picpiclink
          8. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 6mz, cm0, k, mg, par, zn
            1. region u:2-25 [145755] picpiclink
          9. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 6mz, cm0, k, mg, par, zn
            1. region u:2-25 [145757] picpiclink
          10. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, psu, zn
            1. chain v [79890] picpiclink
          11. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 6mz, cm0, k, mg, par, zn
            1. region u:2-25 [145754] picpiclink
          12. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, zn
            1. chain v [115624] picpiclink
          13. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, zn
            1. chain v [115646] picpiclink
          14. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. chain v [46117] picpiclink
          15. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with hyg, mg, zn
            1. chain v [46118] picpiclink
          16. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 5mu, mg, par, zn
            1. region u:2-25 [145557] picpiclink
          17. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 5mu, mg, par, zn
            1. region u:2-25 [145583] picpiclink
          18. 2uxd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with k, mg, par, zn
            1. region v:2-25 [152301] picpiclink
          19. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, mnu, par, t6a, zn
            1. chain v [115520] picpiclink
          20. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, tac, zn
            1. chain v [46119] picpiclink
          21. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with zn
            1. region v:2-25 [145110] picpiclink
          22. 3d5a picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with mg, zn
            1. region u:2-25 [157354] picpiclink
          23. 3d5c picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with mg, zn
            1. region u:2-25 [157384] picpiclink
          24. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, wo2, zn
            1. chain u [62012] picpiclink
          25. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, pcy, zn
            1. chain v [46120] picpiclink
          26. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, psu, zn
            1. chain v [79912] picpiclink
          27. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with ksg
            1. region u:2-25 [145392] picpiclink
          28. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, wo2, zn
            1. chain u [62056] picpiclink
          29. 2uxb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with k, mg, par, zn
            1. region u:2-25 [152282] picpiclink
          30. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with zn
            1. chain v [79934] picpiclink
          31. 2v46 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 5mu, mg, zn
            1. region u:2-25 [152503] picpiclink
          32. 2v48 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 5mu, mg, zn
            1. region u:2-25 [152539] picpiclink
          33. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, tac, wo2, zn
            1. chain u [62079] picpiclink
          34. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with zn
            1. chain v [79957] picpiclink
          35. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ede, mg, wo2, zn
            1. chain u [62034] picpiclink
          36. 2qnh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
            1. region v:2-25 [150945] picpiclink
          37. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            1. region x:2-25 [145328] picpiclink
          38. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            1. region x:2-25 [145296] picpiclink
          39. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            1. region x:2-25 [145360] picpiclink
          40. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
            1. region v:2-25 [145737] picpiclink
          41. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            1. region x:2-25 [144699] picpiclink
          42. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with psu, yyg
            1. region u:2-25 [144954] picpiclink
          43. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with psu, yyg
            1. region u:2-25 [144976] picpiclink
          44. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1YL4 X:2-25
            complexed with psu, yyg
            1. region u:2-25 [144967] picpiclink
  2. HIV-1 REV fragments [58326] (1)
    link to SUPERFAMILY database - Superfamily
    1. HIV-1 REV fragments [58327] (1)
      1. HIV-1 REV fragments [58328]
        1. Human immunodeficiency virus type 1 [TaxId: 11676] [58329] (6)
          1. 1etg picpic
            residues 33-55
            1. chain b [46123] picpiclink
          2. 1etf picpic
            residues 33-55
            1. chain b [46124] picpiclink
          3. 484d picpic
            residues 34-50; bound to RNA
            1. chain a [46122] picpiclink
          4. 1rpv picpic
            residues 34-50
            1. chain a [46121] picpiclink
          5. 1ull picpic
            residues 34-50; bound to RNA
            1. chain b [46125] picpiclink
          6. 1i9f picpic
            bound to RNA
            1. chain b [62089] picpiclink
  3. RSG-1.2 peptide [58330] (1)
    link to SUPERFAMILY database - Superfamily
    1. RSG-1.2 peptide [58331] (1)
      1. RSG-1.2 peptide [58332]
        1. Human immunodeficiency virus type 1 [TaxId: 11676] [58333] (1)
          1. 1g70 picpic
            1. chain b [90353] picpiclink
  4. TAT peptides [58334] (1)
    link to SUPERFAMILY database - Superfamily
    1. TAT peptides [58335] (2)
      1. TAT peptides [58336]
        1. Human immunodeficiency virus type 1 [TaxId: 11676] [58337] (1)
          1. 1jfw picpic
            1. chain a [62942] picpiclink
        2. Bovine immunodeficiency virus [TaxId: 11657] [58338] (2)
          1. 1mnb picpic
            residues 68-81; bound to TAR RNA
            1. chain a [46128] picpiclink
          2. 1biv picpic
            residues 65-81; bound to TAR RNA
            1. chain b [46129] picpiclink
  5. Box B RNA-binding N peptide [58339] (1)
    link to SUPERFAMILY database - Superfamily
    1. Box B RNA-binding N peptide [58340] (4)
      1. Box B RNA-binding N peptide [58341]
        1. Salmonella bacteriophage P22 [TaxId: 10754] [58342] (1)
          1. 1a4t picpic
            1. chain b [46130] picpiclink
        2. Bacteriophage lambda [TaxId: 10710] [58343] (1)
          1. 1qfq picpic
            1. chain b [46131] picpiclink
        3. Bacteriophage HK022 [TaxId: 10742] [70007] (1)
          1. 1hji picpic
            1. chain b [65847] picpiclink
        4. Bacteriophage phi-21 [TaxId: 10737] [90280] (1)
          1. 1nyb picpic
            1. chain a [86402] picpiclink
  6. HTLV-1 peptide [58344] (1)
    link to SUPERFAMILY database - Superfamily
    1. HTLV-1 peptide [58345] (1)
      1. HTLV-1 peptide [58346]
        bound to its RNA aptamer target
        1. Synthetic [58347] (1)
          1. 1exy picpic
            1. chain b [46132] picpiclink
  7. Ilarvirus coat protein N-terminal fragment [118396] (1)
    link to SUPERFAMILY database - Superfamily
    1. Ilarvirus coat protein N-terminal fragment [118397] (1)
      N-terminal part of Pfam 01787; RNA-binding helix
      1. Ilarvirus coat protein N-terminal fragment [118398]
        1. Alfalfa mosaic virus (strain YSMV) [TaxId: 12325] [118399] (1)
          SQ P24264 1-26
          1. 1xok picpic
            1. chain c [115702] picpiclink
            2. chain d [115703] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk