Structural Classification of Proteins
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Class: Designed proteins

Experimental structures of proteins with essentially non-natural sequences. Not a true class

Lineage:

  1. Root: scop
  2. Class: Designed proteins [58788]
    Experimental structures of proteins with essentially non-natural sequences. Not a true class

Folds:

  1. New fold designs [103774] (1)
    1. New fold designs [103775] (1)
      link to SUPERFAMILY database - Superfamily
      1. alpha+beta folds [103776] (2)
        1. Top7 [103777]
          beta(2)-alpha-beta-alpha-beta(2); 2 layers: a/b; antiparallel beta-sheet: order 21354
          1. Synthetic, computationally designed sequence [103778] (1) picpic
          2. unidentified [TaxId: 32644] [161312] (1) picpic
  2. In vitro evolution products [103779] (1)
    1. In vitro evolution products [103780] (1)
      link to SUPERFAMILY database - Superfamily
      1. Function-directed selections [103781] (1)
        1. Artificial nucleotide binding protein (ANBP) [103782]
          binds ADP; contains zinc-binding site similar to that of the transcription factor GATA-1
          1. Synthetic [103783] (1) picpic
  3. Hybrid and chimeric proteins [58789] (1)
    1. Hybrid and chimeric proteins [58790] (1)
      link to SUPERFAMILY database - Superfamily
      1. Hybrid and chimeric proteins [58791] (3)
        1. Hybrid protein between chymotrypsin inhibitor CI-2 and helix E from subtilisin Carlsberg [58792]
          1. Barley (Hordeum vulgare), hiproly strain [TaxId: 4513] [58793] (1) picpic
        2. Tmzip: a chimeric peptide model of the n-terminus of alpha tropomyosin [58794]
          dimeric coiled coil
          1. Synthetic, based on Rattus rattus sequence [58795] (1) picpic
        3. Genetically engineered molecular motor [58796]
          myosin II heavy chain fused to alpha-actinin spectrin-like repeats 1 and 2
          1. Dictyostelium discoideum [TaxId: 44689] [58797] (1) picpic
  4. Amphiphilic (amphipathic) alpha helix [58798] (1)
    1. Amphiphilic (amphipathic) alpha helix [58799] (1)
      link to SUPERFAMILY database - Superfamily
      1. Amphiphilic (amphipathic) alpha helix [58800] (3)
        1. Designed sequence 'Alpha 1' [58801]
          1. Synthetic [58802] (3) picpic
        2. Model helical basic peptides [58803]
          1. Synthetic, based on human platelet factor 4 [58804] (3) picpic
        3. Octameric de novo designed peptide [83012]
          packing of helices in octamer is similar to that of the Uteroglobin-like dimer (see 2utg)
          1. Synthetic [83013] (1) picpic
  5. Collagen-like peptides [58805] (1)
    1. Collagen-like peptides [58806] (1)
      link to SUPERFAMILY database - Superfamily
      1. Collagen-like peptides [58807] (8)
        1. Collagen-like peptides [58808]
          1. Synthetic, (pro-pro-gly)9 [83014] (1) picpic
          2. Synthetic (pro-pro-gly)n [58809] (4) picpic
          3. Synthetic [(pro-hyp-gly)4-glu-lys-gly(pro-hyp-gly)5] [58810] (1) picpic
          4. Synthetic [(pro-hyp-gly)4-pg-(pro-hyp-gly)5] [103784] (1) picpic
            contains a discontinuity in the repeating tripeptide sequence
          5. Synthetic (contains biological sequence) [100902] (1) picpic
          6. Synthetic (contains integrin-binding sequence) [64663] (2) picpic
          7. Synthetic, [(pro-pro-gly)10]3 triple helix model [70052] (2) picpic
          8. Synthetic, (pro-hyp-gly)n [111543] (3) picpic
  6. Coiled serine [58812] (1)
    1. Coiled serine [58813] (1)
      link to SUPERFAMILY database - Superfamily
      1. Coiled serine [58814] (2)
        1. Coiled serine [58815]
          1. Synthetic [58816] (1) picpic
          2. synthetic construct [161313] (1) picpic
  7. Designed trimeric coiled-coil [100903] (1)
    1. Designed trimeric coiled-coil [100904] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed trimeric coiled-coil [100905] (4)
        not a true family
        1. Amyloidogenic design-1 [103785]
          1. synthetic [103786] (1) picpic
        2. VaLd trimeric coiled-coil [58820]
          1. Synthetic [58821] (1) picpic
        3. Unnamed design-1 [100906]
          1. Synthetic [64668] (1) picpic
        4. Unnamed design-2 [100907]
          1. Synthetic [75766] (1) picpic
  8. Designed heterodimeric coiled-coil [58822] (1)
    1. Designed heterodimeric coiled-coil [58823] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed heterodimeric coiled-coil [58824] (2)
        1. Designed heterodimeric leucine zipper [58825]
          1. Synthetic, GCN4-based [58826] (2) picpic
        2. iaal-e3/k3 heterodimer [118404]
          1. synthetic [118405] (1) picpic
  9. Thermostable heterotrimeric coiled coil [58827] (1)
    1. Thermostable heterotrimeric coiled coil [58828] (1)
      link to SUPERFAMILY database - Superfamily
      1. Thermostable heterotrimeric coiled coil [58829] (1)
        1. Thermostable heterotrimeric coiled coil [58830]
          1. Synthetic [58831] (1) picpic
  10. Designed four-helix bundle protein [58832] (1)
    1. Designed four-helix bundle protein [58833] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed four-helix bundle protein [58834] (5)
        this is not a true family
        1. De novo designed protein s-824 [103787]
          single-chain four-helical protein
          1. Synthetic [103788] (1) picpic
          2. unidentified [TaxId: 32644] [161314] (1) picpic
        2. DHP1 [58835]
          1. Synthetic non-biological source [58836] (1) picpic
        3. Artificial diiron protein [58837]
          dimeric alpha-hairpin fold
          1. Synthetic, different variants [58838] (15) picpic
        4. Molecular maquette scaffold [83015]
          1. Synthetic [83016] (1) picpic
  11. Designed single chain three-helix bundle [58839] (1)
    not a true fold: both possible topologies are created
    1. Designed single chain three-helix bundle [58840] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed single chain three-helix bundle [58841] (3)
        1. De novo bundle (a3d) [58842]
          1. Synthetic [58843] (1) picpic
        2. Domain swapped dimer [58844]
          1. Synthetic [58845] (1) picpic
        3. Alpha3W [75767]
          de novo designed protein model of radical enzymes
          1. Synthetic [75768] (1) picpic
  12. Peptide f (amphiphilic octadecapeptide) [58846] (1)
    1. Peptide f (amphiphilic octadecapeptide) [58847] (1)
      link to SUPERFAMILY database - Superfamily
      1. Peptide f (amphiphilic octadecapeptide) [58848] (1)
        1. Peptide f (amphiphilic octadecapeptide) [58849]
          Designed sequence (EQLLKALEFLLKELLEKL),
          1. Synthetic [58850] (1) picpic
  13. Retro-GCN4 leucine zipper [58851] (1)
    1. Retro-GCN4 leucine zipper [58852] (1)
      link to SUPERFAMILY database - Superfamily
      1. Retro-GCN4 leucine zipper [58853] (1)
        1. Retro-GCN4 leucine zipper [58854]
          1. Synthetic [58855] (1) picpic
  14. Glytm1bzip [70053] (1)
    1. Glytm1bzip [70054] (1)
      link to SUPERFAMILY database - Superfamily
      1. Glytm1bzip [70055] (1)
        1. Glytm1bzip [70056]
          a chimeric peptide model of tropomyosin and GCN4 coiled coils
          1. Chimeric (Rattus norvegicus) and (saccharomyces cerevisiae) [70057] (1) picpic
  15. Zinc finger design [58856] (1)
    1. Zinc finger design [58857] (1)
      link to SUPERFAMILY database - Superfamily
      1. Zinc finger design [58858] (11)
        1. Designed zinc finger protein [58859]
          1. Synthetic consensus sequence, non-biological source [58860] (1) picpic
          2. Mus musculus [TaxId: 10090] [161315] (1) picpic
          3. Homo sapiens [TaxId: 9606] [161316] (87) picpic
        2. Zinc finger with an artificial beta-turn [58861]
          original sequence taken from the third zinc finger domain of the human transcriptional repressor protein yy1
          1. Synthetic, based on Homo sapiens sequence [58862] (1) picpic
          2. Homo sapiens [TaxId: 9606] [161317] (4) picpic
        3. FSD-EY [64669]
          1. Synthetic [64670] (1) picpic
        4. TATA box-binding zinc finger, TATAZF [64671]
          1. Mouse (Mus musculus), Zif268 based [TaxId: 10090] [64672] (2) picpic
        5. E6-binding zinc finger, different constructs [111544]
          1. Synthetic [111545] (2) picpic
          2. Homo sapiens [TaxId: 9606] [161318] (1) picpic
        6. AART, designed six-finger protein [144340]
          1. synthetic [144341] (2) picpic
        7. HIV REV-targetting Znf29 [161319]
          1. synthetic [161320] (2) picpic
  16. Protein A Ig(Fc)-binding domain mimics [58863] (1)
    1. Protein A Ig(Fc)-binding domain mimics [58864] (1)
      link to SUPERFAMILY database - Superfamily
      1. Protein A Ig(Fc)-binding domain mimics [58865] (1)
        1. Protein A Ig(Fc)-binding domain mimics [58866]
          1. Synthetic [58867] (7) picpic
  17. Zinc finger based beta-beta-alpha motif [58868] (1)
    1. Zinc finger based beta-beta-alpha motif [58869] (1)
      link to SUPERFAMILY database - Superfamily
      1. Zinc finger based beta-beta-alpha motif [58870] (5)
        1. Full sequence design 1 (fsd-1) [58871]
          1. Synthetic [58872] (2) picpic
        2. Computationally designed peptide with a beta-beta-alpha fold selection [58873]
          1. Synthetic [58874] (1) picpic
        3. 23-residue designed metal-free peptide based on the zinc finger domains [58875]
          1. Synthetic [58876] (1) picpic
        4. BBA5 [111546]
          1. Synthetic [111547] (1) picpic
        5. Segment-swapped tetrameric beta-beta-alpha mini-protein [111548]
          1. Synthetic [111549] (3) picpic
  18. helix-turn-helix motif [58877] (1)
    1. helix-turn-helix motif [58878] (1)
      link to SUPERFAMILY database - Superfamily
      1. helix-turn-helix motif [58879] (2)
        1. Alpha-t-alpha, a de novo designed peptide [58880]
          1. Synthetic non-biological sequence [58881] (1) picpic
        2. De novo designed 21 residue peptide [111550]
          1. synthetic [111551] (1) picpic
  19. alpha2d [58882] (1)
    1. alpha2d [58883] (1)
      link to SUPERFAMILY database - Superfamily
      1. alpha2d [58884] (1)
        1. alpha2d [58885]
          1. Synthetic [58886] (1) picpic
  20. Right-handed coiled coil [58887] (1)
    1. Right-handed coiled coil [58888] (1)
      link to SUPERFAMILY database - Superfamily
      1. Right-handed coiled coil [58889] (3)
        1. RH4 designed right-handed coiled coil tetramer [58890]
          1. Synthetic non-biological sequence [58891] (1) picpic
        2. RH3 designed right-handed coiled coil trimer [118406]
          1. synthetic [118407] (1) picpic
          2. synthetic construct [161321] (1) picpic
  21. TPR domain-based design [90307] (1)
    1. TPR domain-based design [90308] (1)
      link to SUPERFAMILY database - Superfamily
      1. TPR domain-based design [90309] (6)
        alpha-helical arrays from an idealized TPR motif
        1. Designed protein cTPR3 [90310]
          1. Synthetic [90311] (1) picpic
          2. Homo sapiens [TaxId: 9606] [161322] (1) picpic
        2. Designed protein cTPR2 [90312]
          1. Synthetic [90313] (1) picpic
        3. An 8 repeat consensus TPR superhelix [144342]
          1. synthetic [144343] (2) picpic
          2. Bacillus subtilis [TaxId: 1423] [161323] (1) picpic
          3. Yersinia enterocolitica [TaxId: 630] [161324] (1) picpic
  22. Erythropoietin (EPO) mimetic peptides [58892] (1)
    1. Erythropoietin (EPO) mimetic peptides [58893] (1)
      link to SUPERFAMILY database - Superfamily
      1. Erythropoietin (EPO) mimetic peptides [58894] (1)
        1. Erythropoietin (EPO) mimetic peptides [58895]
          1. Synthetic [58896] (3) picpic
  23. IL-1 receptor type 1 antagonist peptide AF10847 [58897] (1)
    1. IL-1 receptor type 1 antagonist peptide AF10847 [58898] (1)
      link to SUPERFAMILY database - Superfamily
      1. IL-1 receptor type 1 antagonist peptide AF10847 [58899] (1)
        1. IL-1 receptor type 1 antagonist peptide AF10847 [58900]
          1. Synthetic [58901] (1) picpic
  24. Octreotide (Sandostatine), a somatostatine analogue [58902] (1)
    1. Octreotide (Sandostatine), a somatostatine analogue [58903] (1)
      link to SUPERFAMILY database - Superfamily
      1. Octreotide (Sandostatine), a somatostatine analogue [58904] (1)
        1. Octreotide (Sandostatine), a somatostatine analogue [58905]
          1. Synthetic [58906] (2) picpic
  25. Calmodulin [58907] (1)
    1. Calmodulin [58908] (1)
      link to SUPERFAMILY database - Superfamily
      1. Calmodulin [58909] (1)
        1. Calmodulin [58910]
          1. Synthetic [58911] (3) picpic
            consensus sequence from a number of sources
  26. WW domain-based designs [58912] (1)
    1. WW domain-based designs [58913] (1)
      link to SUPERFAMILY database - Superfamily
      1. WW domain-based designs [58914] (4)
        1. Prototype WW domain [58915]
          1. Synthetic [58916] (1) picpic
          2. Homo sapiens [TaxId: 9606] [161325] (1) picpic
          3. Mus musculus [TaxId: 10090] [161326] (6) picpic
        2. CC45 [161327]
          An artificial WW domain designed using Statistical Coupling Analysis
          1. Synthetic [161328] (1) picpic
  27. Artificial ankyrin repeat proteins [83017] (1)
    1. Artificial ankyrin repeat proteins [83018] (1)
      link to SUPERFAMILY database - Superfamily
      1. Artificial ankyrin repeat proteins [83019] (9)
        1. Sank e3_5 [83020]
          1. Synthetic [83021] (1) picpic
          2. synthetic construct [161329] (1) picpic
        2. 3ank [83022]
          1. Synthetic [83023] (1) picpic
          2. synthetic construct [161330] (1) picpic
          3. Homo sapiens [TaxId: 9606] [161331] (2) picpic
          4. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [161332] (2) picpic
        3. 4ank [83024]
          1. Synthetic [83025] (1) picpic
          2. unidentified [TaxId: 32644] [161333] (1) picpic
        4. Off7 [111552]
          1. synthetic [111553] (1) picpic
  28. Carboxypeptidase A prodomain-based design [103789] (1)
    1. Carboxypeptidase A prodomain-based design [103790] (1)
      link to SUPERFAMILY database - Superfamily
      1. Carboxypeptidase A prodomain-based design [103791] (1)
        1. Carboxypeptidase A prodomain-based design [103792]
          1. Synthetic, sequence chosen for maximal predicted stability [103793] (1) picpic
  29. Ubiquitin [144344] (1)
    1. Ubiquitin [144345] (1)
      link to SUPERFAMILY database - Superfamily
      1. Ubiquitin [144346] (4)
        1. Ubiquitin [144347]
          1. synthetic [144348] (14) picpic
          2. Paramecium tetraurelia strain d4-2 [TaxId: 412030] [161334] (1) picpic
          3. Saccharomyces cerevisiae [TaxId: 4932] [161335] (1) picpic
          4. Homo sapiens [TaxId: 9606] [161336] (4) picpic
  30. Cro lambda fold design [144349] (1)
    1. Cro lambda fold design [144350] (1)
      link to SUPERFAMILY database - Superfamily
      1. Cro lambda fold design [144351] (1)
        1. Sn4m [144352]
          1. synthetic [144353] (1) picpic
  31. Scorpion toxin-based designs [58917] (1)
    1. Scorpion toxin-based designs [58918] (2)
      link to SUPERFAMILY database - Superfamily
      1. Potassium channel toxin hstx1 [58919] (1)
        1. Potassium channel toxin hstx1 [58920]
          1. Synthetic [58921] (1) picpic
      2. Mini-protein reproducing the core of the CD4 surface [58922] (1)
        1. Mini-protein reproducing the core of the CD4 surface [58923]
          interacting with the hiv-1 envelope glycoprotein
          1. Synthetic [58924] (9) picpic
  32. TH (toxin hand)-motif beta-sheet mini-protein designs [64673] (1)
    1. TH (toxin hand)-motif beta-sheet mini-protein designs [64674] (1)
      link to SUPERFAMILY database - Superfamily
      1. TH (toxin hand)-motif beta-sheet mini-protein designs [64675] (3)
        1. TH 10A-ox [64676]
          1. Synthetic [64677] (1) picpic
        2. TH 1-ox [64678]
          1. Synthetic [64679] (1) picpic
        3. TH10B-ox [64680]
          1. Synthetic [64681] (1) picpic
  33. Inhibitor of mammalian ribonucleotide reductase [58925] (1)
    1. Inhibitor of mammalian ribonucleotide reductase [58926] (1)
      link to SUPERFAMILY database - Superfamily
      1. Inhibitor of mammalian ribonucleotide reductase [58927] (1)
        1. Inhibitor of mammalian ribonucleotide reductase [58928]
          1. Synthetic [58929] (1) picpic
  34. Integrin-binding RGD peptide [64682] (1)
    1. Integrin-binding RGD peptide [64683] (1)
      link to SUPERFAMILY database - Superfamily
      1. Integrin-binding RGD peptide [64684] (1)
        1. Integrin-binding RGD peptide [64685]
          1. Synthetic [64686] (2) picpic
  35. Peptide antagonists of IGF-1 [64687] (1)
    1. Peptide antagonists of IGF-1 [64688] (1)
      link to SUPERFAMILY database - Superfamily
      1. Peptide antagonists of IGF-1 [64689] (1)
        1. Peptide antagonists of IGF-1 [64690]
          1. Synthetic [64691] (7) picpic
  36. beta-hairpin design [64692] (1)
    1. beta-hairpin design [64693] (1)
      link to SUPERFAMILY database - Superfamily
      1. beta-hairpin design [64694] (9)
        1. Tryptophan zipper 1 [64695]
          1. Synthetic [64696] (1) picpic
        2. Tryptophan zipper 2 [64697]
          1. Synthetic [64698] (1) picpic
        3. Tryptophan zipper 4 [64699]
          1. Synthetic [64700] (1) picpic
        4. DP-TT2 [64701]
          1. Synthetic [64702] (1) picpic
        5. Peptide MBH12 (rg-kwty-ng-itye-gr) [70058]
          1. Synthetic [70059] (2) picpic
        6. A minimal peptide scaffold for beta-turn display [83026]
          1. Synthetic [83027] (2) picpic
        7. Bhpw_pdg, beta-hairpin peptide [103794]
          1. Synthetic [103795] (1) picpic
        8. Bhp_hwlv, disulfide cyclized beta-hairpin [103796]
          1. Synthetic [103797] (1) picpic
        9. Chignolin [103798]
          1. Synthetic [103799] (1) picpic
  37. Trp-cage miniprotein [75769] (1)
    1. Trp-cage miniprotein [75770] (1)
      link to SUPERFAMILY database - Superfamily
      1. Trp-cage miniprotein [75771] (1)
        1. Trp-cage miniprotein, different constructs [75772]
          1. Synthetic [75773] (2) picpic
  38. Synthetic high affinity IgE receptor antagonists [64703] (1)
    1. Synthetic high affinity IgE receptor antagonists [64704] (2)
      not a true superfamily
      link to SUPERFAMILY database - Superfamily
      1. Hairpin peptide [64705] (1)
        1. Hairpin peptide [64706]
          1. Synthetic [64707] (1) picpic
      2. Zeta peptides [75774] (2)
        1. E109 [75775]
          1. Synthetic [75776] (1) picpic
        2. E131 [75777]
          1. Synthetic [75778] (1) picpic
  39. IFN mimetic syr6 [75779] (1)
    1. IFN mimetic syr6 [75780] (1)
      link to SUPERFAMILY database - Superfamily
      1. IFN mimetic syr6 [75781] (1)
        1. IFN mimetic syr6 [75782]
          1. Synthetic [75783] (2) picpic
  40. TAZ (CH) Zn-binding domain based design [75784] (1)
    1. TAZ (CH) Zn-binding domain based design [75785] (1)
      link to SUPERFAMILY database - Superfamily
      1. TAZ (CH) Zn-binding domain based design [75786] (1)
        1. Fragment of the CH1 domain of cbp [75787]
          1. Synthetic [75788] (1) picpic
  41. Beta-sheet designs [75789] (1)
    1. Beta-sheet designs [75790] (1)
      link to SUPERFAMILY database - Superfamily
      1. Beta-sheet designs [75791] (2)
        1. B4dimer [75792]
          de novo designed eight-stranded beta-sheet assembled using a disulfide bond
          1. Synthetic [75793] (2) picpic
        2. Betacore [75794]
          designed water soluble four-stranded antiparallel beta-sheet protein
          1. Synthetic [75795] (1) picpic
  42. PW2, a tryptophan-rich anticocidial peptide [75796] (1)
    1. PW2, a tryptophan-rich anticocidial peptide [75797] (1)
      link to SUPERFAMILY database - Superfamily
      1. PW2, a tryptophan-rich anticocidial peptide [75798] (1)
        1. PW2, a tryptophan-rich anticocidial peptide [75799]
          1. Synthetic [75800] (1) picpic
  43. Designed EF-hand type cation-binding loop [111554] (1)
    1. Designed EF-hand type cation-binding loop [111555] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed EF-hand type cation-binding loop [111556] (1)
        1. Lanthanide-binding peptide [111557]
          1. Synthetic [111558] (1) picpic
  44. Metalloporphyrin-binding designed peptides [90314] (1)
    1. Metalloporphyrin-binding designed peptides [90315] (1)
      link to SUPERFAMILY database - Superfamily
      1. Metalloporphyrin-binding designed peptides [90316] (2)
        1. Mimochrome, heme-binding design [90317]
          1. Synthetic [90318] (2) picpic
        2. De novo designed cyclic peptide [103800]
          1. Synthetic [103801] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk