Structural Classification of Proteins
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Class: Designed proteins

Experimental structures of proteins with essentially non-natural sequences. Not a true class

Lineage:

  1. Root: scop
  2. Class: Designed proteins [58788]
    Experimental structures of proteins with essentially non-natural sequences. Not a true class

Folds:

  1. New fold designs [103774] (1)
    1. New fold designs [103775] (1)
      link to SUPERFAMILY database - Superfamily
      1. alpha+beta folds [103776] (2) picpic
  2. In vitro evolution products [103779] (1)
    1. In vitro evolution products [103780] (1)
      link to SUPERFAMILY database - Superfamily
      1. Function-directed selections [103781] (1) picpic
  3. Hybrid and chimeric proteins [58789] (1)
    1. Hybrid and chimeric proteins [58790] (1)
      link to SUPERFAMILY database - Superfamily
      1. Hybrid and chimeric proteins [58791] (3) picpic
  4. Amphiphilic (amphipathic) alpha helix [58798] (1)
    1. Amphiphilic (amphipathic) alpha helix [58799] (1)
      link to SUPERFAMILY database - Superfamily
      1. Amphiphilic (amphipathic) alpha helix [58800] (3) picpic
  5. Collagen-like peptides [58805] (1)
    1. Collagen-like peptides [58806] (1)
      link to SUPERFAMILY database - Superfamily
      1. Collagen-like peptides [58807] (8) picpic
  6. Coiled serine [58812] (1)
    1. Coiled serine [58813] (1)
      link to SUPERFAMILY database - Superfamily
      1. Coiled serine [58814] (2) picpic
  7. Designed trimeric coiled-coil [100903] (1)
    1. Designed trimeric coiled-coil [100904] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed trimeric coiled-coil [100905] (4) picpic
        not a true family
  8. Designed heterodimeric coiled-coil [58822] (1)
    1. Designed heterodimeric coiled-coil [58823] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed heterodimeric coiled-coil [58824] (2) picpic
  9. Thermostable heterotrimeric coiled coil [58827] (1)
    1. Thermostable heterotrimeric coiled coil [58828] (1)
      link to SUPERFAMILY database - Superfamily
      1. Thermostable heterotrimeric coiled coil [58829] (1) picpic
  10. Designed four-helix bundle protein [58832] (1)
    1. Designed four-helix bundle protein [58833] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed four-helix bundle protein [58834] (5) picpic
        this is not a true family
  11. Designed single chain three-helix bundle [58839] (1)
    not a true fold: both possible topologies are created
    1. Designed single chain three-helix bundle [58840] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed single chain three-helix bundle [58841] (3) picpic
  12. Peptide f (amphiphilic octadecapeptide) [58846] (1)
    1. Peptide f (amphiphilic octadecapeptide) [58847] (1)
      link to SUPERFAMILY database - Superfamily
      1. Peptide f (amphiphilic octadecapeptide) [58848] (1) picpic
  13. Retro-GCN4 leucine zipper [58851] (1)
    1. Retro-GCN4 leucine zipper [58852] (1)
      link to SUPERFAMILY database - Superfamily
      1. Retro-GCN4 leucine zipper [58853] (1) picpic
  14. Glytm1bzip [70053] (1)
    1. Glytm1bzip [70054] (1)
      link to SUPERFAMILY database - Superfamily
      1. Glytm1bzip [70055] (1) picpic
  15. Zinc finger design [58856] (1)
    1. Zinc finger design [58857] (1)
      link to SUPERFAMILY database - Superfamily
      1. Zinc finger design [58858] (11) picpic
  16. Protein A Ig(Fc)-binding domain mimics [58863] (1)
    1. Protein A Ig(Fc)-binding domain mimics [58864] (1)
      link to SUPERFAMILY database - Superfamily
      1. Protein A Ig(Fc)-binding domain mimics [58865] (1) picpic
  17. Zinc finger based beta-beta-alpha motif [58868] (1)
    1. Zinc finger based beta-beta-alpha motif [58869] (1)
      link to SUPERFAMILY database - Superfamily
      1. Zinc finger based beta-beta-alpha motif [58870] (5) picpic
  18. helix-turn-helix motif [58877] (1)
    1. helix-turn-helix motif [58878] (1)
      link to SUPERFAMILY database - Superfamily
      1. helix-turn-helix motif [58879] (2) picpic
  19. alpha2d [58882] (1)
    1. alpha2d [58883] (1)
      link to SUPERFAMILY database - Superfamily
      1. alpha2d [58884] (1) picpic
  20. Right-handed coiled coil [58887] (1)
    1. Right-handed coiled coil [58888] (1)
      link to SUPERFAMILY database - Superfamily
      1. Right-handed coiled coil [58889] (3) picpic
  21. TPR domain-based design [90307] (1)
    1. TPR domain-based design [90308] (1)
      link to SUPERFAMILY database - Superfamily
      1. TPR domain-based design [90309] (6) picpic
        alpha-helical arrays from an idealized TPR motif
  22. Erythropoietin (EPO) mimetic peptides [58892] (1)
    1. Erythropoietin (EPO) mimetic peptides [58893] (1)
      link to SUPERFAMILY database - Superfamily
      1. Erythropoietin (EPO) mimetic peptides [58894] (1) picpic
  23. IL-1 receptor type 1 antagonist peptide AF10847 [58897] (1)
    1. IL-1 receptor type 1 antagonist peptide AF10847 [58898] (1)
      link to SUPERFAMILY database - Superfamily
      1. IL-1 receptor type 1 antagonist peptide AF10847 [58899] (1) picpic
  24. Octreotide (Sandostatine), a somatostatine analogue [58902] (1)
    1. Octreotide (Sandostatine), a somatostatine analogue [58903] (1)
      link to SUPERFAMILY database - Superfamily
      1. Octreotide (Sandostatine), a somatostatine analogue [58904] (1) picpic
  25. Calmodulin [58907] (1)
    1. Calmodulin [58908] (1)
      link to SUPERFAMILY database - Superfamily
      1. Calmodulin [58909] (1) picpic
  26. WW domain-based designs [58912] (1)
    1. WW domain-based designs [58913] (1)
      link to SUPERFAMILY database - Superfamily
      1. WW domain-based designs [58914] (4) picpic
  27. Artificial ankyrin repeat proteins [83017] (1)
    1. Artificial ankyrin repeat proteins [83018] (1)
      link to SUPERFAMILY database - Superfamily
      1. Artificial ankyrin repeat proteins [83019] (9) picpic
  28. Carboxypeptidase A prodomain-based design [103789] (1)
    1. Carboxypeptidase A prodomain-based design [103790] (1)
      link to SUPERFAMILY database - Superfamily
      1. Carboxypeptidase A prodomain-based design [103791] (1) picpic
  29. Ubiquitin [144344] (1)
    1. Ubiquitin [144345] (1)
      link to SUPERFAMILY database - Superfamily
      1. Ubiquitin [144346] (4) picpic
  30. Cro lambda fold design [144349] (1)
    1. Cro lambda fold design [144350] (1)
      link to SUPERFAMILY database - Superfamily
      1. Cro lambda fold design [144351] (1) picpic
  31. Scorpion toxin-based designs [58917] (1)
    1. Scorpion toxin-based designs [58918] (2)
      link to SUPERFAMILY database - Superfamily
      1. Potassium channel toxin hstx1 [58919] (1) picpic
      2. Mini-protein reproducing the core of the CD4 surface [58922] (1) picpic
  32. TH (toxin hand)-motif beta-sheet mini-protein designs [64673] (1)
    1. TH (toxin hand)-motif beta-sheet mini-protein designs [64674] (1)
      link to SUPERFAMILY database - Superfamily
      1. TH (toxin hand)-motif beta-sheet mini-protein designs [64675] (3) picpic
  33. Inhibitor of mammalian ribonucleotide reductase [58925] (1)
    1. Inhibitor of mammalian ribonucleotide reductase [58926] (1)
      link to SUPERFAMILY database - Superfamily
      1. Inhibitor of mammalian ribonucleotide reductase [58927] (1) picpic
  34. Integrin-binding RGD peptide [64682] (1)
    1. Integrin-binding RGD peptide [64683] (1)
      link to SUPERFAMILY database - Superfamily
      1. Integrin-binding RGD peptide [64684] (1) picpic
  35. Peptide antagonists of IGF-1 [64687] (1)
    1. Peptide antagonists of IGF-1 [64688] (1)
      link to SUPERFAMILY database - Superfamily
      1. Peptide antagonists of IGF-1 [64689] (1) picpic
  36. beta-hairpin design [64692] (1)
    1. beta-hairpin design [64693] (1)
      link to SUPERFAMILY database - Superfamily
      1. beta-hairpin design [64694] (9) picpic
  37. Trp-cage miniprotein [75769] (1)
    1. Trp-cage miniprotein [75770] (1)
      link to SUPERFAMILY database - Superfamily
      1. Trp-cage miniprotein [75771] (1) picpic
  38. Synthetic high affinity IgE receptor antagonists [64703] (1)
    1. Synthetic high affinity IgE receptor antagonists [64704] (2)
      not a true superfamily
      link to SUPERFAMILY database - Superfamily
      1. Hairpin peptide [64705] (1) picpic
      2. Zeta peptides [75774] (2) picpic
  39. IFN mimetic syr6 [75779] (1)
    1. IFN mimetic syr6 [75780] (1)
      link to SUPERFAMILY database - Superfamily
      1. IFN mimetic syr6 [75781] (1) picpic
  40. TAZ (CH) Zn-binding domain based design [75784] (1)
    1. TAZ (CH) Zn-binding domain based design [75785] (1)
      link to SUPERFAMILY database - Superfamily
      1. TAZ (CH) Zn-binding domain based design [75786] (1) picpic
  41. Beta-sheet designs [75789] (1)
    1. Beta-sheet designs [75790] (1)
      link to SUPERFAMILY database - Superfamily
      1. Beta-sheet designs [75791] (2) picpic
  42. PW2, a tryptophan-rich anticocidial peptide [75796] (1)
    1. PW2, a tryptophan-rich anticocidial peptide [75797] (1)
      link to SUPERFAMILY database - Superfamily
      1. PW2, a tryptophan-rich anticocidial peptide [75798] (1) picpic
  43. Designed EF-hand type cation-binding loop [111554] (1)
    1. Designed EF-hand type cation-binding loop [111555] (1)
      link to SUPERFAMILY database - Superfamily
      1. Designed EF-hand type cation-binding loop [111556] (1) picpic
  44. Metalloporphyrin-binding designed peptides [90314] (1)
    1. Metalloporphyrin-binding designed peptides [90315] (1)
      link to SUPERFAMILY database - Superfamily
      1. Metalloporphyrin-binding designed peptides [90316] (2) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk