Class: Designed proteins

Experimental structures of proteins with essentially non-natural sequences. Not a true class

Lineage:

1. Root: scop
2. Class: Designed proteins [58788]
   Experimental structures of proteins with essentially non-natural sequences. Not a true class

Folds:

1. New fold designs [103774] (1)
   1. New fold designs [103775] (1)
      uperfamily
2. In vitro evolution products [103779] (1)
   1. In vitro evolution products [103780] (1)
      uperfamily
3. Hybrid and chimeric proteins [58789] (1)
   1. Hybrid and chimeric proteins [58790] (1)
      uperfamily
4. Amphiphilic (amphipathic) alpha helix [58798] (1)
   1. Amphiphilic (amphipathic) alpha helix [58799] (1)
      uperfamily
5. Collagen-like peptides [58805] (1)
   1. Collagen-like peptides [58806] (1)
      uperfamily
6. Coiled serine [58812] (1)
   1. Coiled serine [58813] (1)
      uperfamily
7. Designed trimeric coiled-coil [100903] (1)
   1. Designed trimeric coiled-coil [100904] (1)
      uperfamily
8. Designed heterodimeric coiled-coil [58822] (1)
   1. Designed heterodimeric coiled-coil [58823] (1)
      uperfamily
9. Thermostable heterotrimeric coiled coil [58827] (1)
   1. Thermostable heterotrimeric coiled coil [58828] (1)
      uperfamily
10. Designed four-helix bundle protein [58832] (1)
    1. Designed four-helix bundle protein [58833] (1)
       uperfamily
11. Designed single chain three-helix bundle [58839] (1)
    not a true fold: both possible topologies are created
    1. Designed single chain three-helix bundle [58840] (1)
       uperfamily
12. Peptide f (amphiphilic octadecapeptide) [58846] (1)
    1. Peptide f (amphiphilic octadecapeptide) [58847] (1)
       uperfamily
13. Retro-GCN4 leucine zipper [58851] (1)
    1. Retro-GCN4 leucine zipper [58852] (1)
       uperfamily
14. Glytm1bzip [70053] (1)
    1. Glytm1bzip [70054] (1)
       uperfamily
15. Zinc finger design [58856] (1)
    1. Zinc finger design [58857] (1)
       uperfamily
16. Protein A Ig(Fc)-binding domain mimics [58863] (1)
    1. Protein A Ig(Fc)-binding domain mimics [58864] (1)
       uperfamily
17. Zinc finger based beta-beta-alpha motif [58868] (1)
    1. Zinc finger based beta-beta-alpha motif [58869] (1)
       uperfamily
18. helix-turn-helix motif [58877] (1)
    1. helix-turn-helix motif [58878] (1)
       uperfamily
19. alpha2d [58882] (1)
    1. alpha2d [58883] (1)
       uperfamily
20. Right-handed coiled coil [58887] (1)
    1. Right-handed coiled coil [58888] (1)
       uperfamily
21. TPR domain-based design [90307] (1)
    1. TPR domain-based design [90308] (1)
       uperfamily
22. Erythropoietin (EPO) mimetic peptides [58892] (1)
    1. Erythropoietin (EPO) mimetic peptides [58893] (1)
       uperfamily
23. IL-1 receptor type 1 antagonist peptide AF10847 [58897] (1)
    1. IL-1 receptor type 1 antagonist peptide AF10847 [58898] (1)
       uperfamily
24. Octreotide (Sandostatine), a somatostatine analogue [58902] (1)
    1. Octreotide (Sandostatine), a somatostatine analogue [58903] (1)
       uperfamily
25. Calmodulin [58907] (1)
    1. Calmodulin [58908] (1)
       uperfamily
26. WW domain-based designs [58912] (1)
    1. WW domain-based designs [58913] (1)
       uperfamily
27. Artificial ankyrin repeat proteins [83017] (1)
    1. Artificial ankyrin repeat proteins [83018] (1)
       uperfamily
28. Carboxypeptidase A prodomain-based design [103789] (1)
    1. Carboxypeptidase A prodomain-based design [103790] (1)
       uperfamily
29. Ubiquitin [144344] (1)
    1. Ubiquitin [144345] (1)
       uperfamily
30. Cro lambda fold design [144349] (1)
    1. Cro lambda fold design [144350] (1)
       uperfamily
31. Scorpion toxin-based designs [58917] (1)
    1. Scorpion toxin-based designs [58918] (2)
       uperfamily
32. TH (toxin hand)-motif beta-sheet mini-protein designs [64673] (1)
    1. TH (toxin hand)-motif beta-sheet mini-protein designs [64674] (1)
       uperfamily
33. Inhibitor of mammalian ribonucleotide reductase [58925] (1)
    1. Inhibitor of mammalian ribonucleotide reductase [58926] (1)
       uperfamily
34. Integrin-binding RGD peptide [64682] (1)
    1. Integrin-binding RGD peptide [64683] (1)
       uperfamily
35. Peptide antagonists of IGF-1 [64687] (1)
    1. Peptide antagonists of IGF-1 [64688] (1)
       uperfamily
36. beta-hairpin design [64692] (1)
    1. beta-hairpin design [64693] (1)
       uperfamily
37. Trp-cage miniprotein [75769] (1)
    1. Trp-cage miniprotein [75770] (1)
       uperfamily
38. Synthetic high affinity IgE receptor antagonists [64703] (1)
    1. Synthetic high affinity IgE receptor antagonists [64704] (2)
       not a true superfamily
       uperfamily
39. IFN mimetic syr6 [75779] (1)
    1. IFN mimetic syr6 [75780] (1)
       uperfamily
40. TAZ (CH) Zn-binding domain based design [75784] (1)
    1. TAZ (CH) Zn-binding domain based design [75785] (1)
       uperfamily
41. Beta-sheet designs [75789] (1)
    1. Beta-sheet designs [75790] (1)
       uperfamily
42. PW2, a tryptophan-rich anticocidial peptide [75796] (1)
    1. PW2, a tryptophan-rich anticocidial peptide [75797] (1)
       uperfamily
43. Designed EF-hand type cation-binding loop [111554] (1)
    1. Designed EF-hand type cation-binding loop [111555] (1)
       uperfamily
44. Metalloporphyrin-binding designed peptides [90314] (1)
    1. Metalloporphyrin-binding designed peptides [90315] (1)
       uperfamily

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk