Structural Classification of Proteins
Family: I set domains
Lineage:
Root:
scop
Class:
All beta proteins
[48724]
Fold:
Immunoglobulin-like beta-sandwich
[48725]
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily:
Immunoglobulin
[48726]
uperfamily
Family:
I set domains
[49159]
Protein Domains:
Vascular cell adhesion molecule-1 (VCAM-1) [49160]
Human (Homo sapiens)
[TaxId: 9606]
[49161] (3)
1vca
D1
region a:1-90
[21685]
region b:1-90
[21686]
1vsc
D1
mutant
region a:1-90
[21687]
region b:1-90
[21688]
1ij9
D1
region a:1-90
[62483]
Intercellular adhesion molecule-1, ICAM-1 [49162]
Human (Homo sapiens)
[TaxId: 9606]
[49163] (10)
1iam
D1
complexed with nag; mutant
region a:1-82
[21689]
2oz4
automatically matched to d1p53a2
complexed with fuc, nag, so4, trs, zn
region a:186-282
[149100]
2oz4
automatically matched to d1p53a3
complexed with fuc, nag, so4, trs, zn
region a:367-450
[149101]
1ic1
D1
complexed with nag
region a:1-82
[21690]
region b:1-82
[21691]
1mq8
D1
complexed with mg, nag; mutant
region a:1-82
[79406]
region c:1-82
[79409]
1z7z
automatically matched to d1d3la2
complexed with nag, ndg; mutant
region i:1-82
[124682]
1z7z
automatically matched to d1p53a2
complexed with nag, ndg; mutant
region i:188-282
[124683]
1z7z
automatically matched to d1p53a3
complexed with nag, ndg; mutant
region i:367-450
[124684]
1d3l
D1
region a:1-82
[21692]
1p53
D3 and D5
complexed with nag
region a:185-282
[94119]
region a:367-450
[94120]
region b:185-282
[94122]
region b:367-450
[94123]
Intercellular adhesion molecule-2, ICAM-2 [49164]
Human (Homo sapiens)
[TaxId: 9606]
[49165] (1)
1zxq
D1
complexed with nag
region a:1-86
[21693]
Neural cell adhesion molecule (NCAM) [49166]
Rat (Rattus norvegicus)
[TaxId: 10116]
[49167] (4)
Rat and mouse sequences are identical for the two N-terminal modules
1epf
modules 1 and 2
complexed with ca
region a:1-97
[21694]
region a:98-189
[21695]
region b:-1-97
[21696]
region b:98-189
[21697]
region c:0-97
[21698]
region c:98-189
[21699]
region d:-1-97
[21700]
region d:98-189
[21701]
1qz1
modules 1, 2 and 3
region a:-1-97
[96609]
region a:98-189
[96610]
region a:190-289
[96611]
3ncm
module 2
mutant
chain a
[21702]
2ncm
module 1; from mouse protein
chain a
[21703]
Chicken (Gallus gallus)
[TaxId: 9031]
[63664] (1)
1ie5
module 3
chain a
[62312]
Mucosal addressin cell adhesion molecule-1 (MADCAM-1) [49168]
Human (Homo sapiens)
[TaxId: 9606]
[49169] (2)
1gsm
region a:1-90
[65535]
region a:91-206
[65536]
1bqs
complexed with nag
region a:1-90
[21704]
region a:91-209
[21705]
Telokin [49170]
Turkey (Meleagris gallopavo)
[TaxId: 9103]
[49171] (2)
1fhg
chain a
[21706]
1tlk
chain a
[21707]
Human (Homo sapiens)
[TaxId: 9606]
[141012] (1)
SQ
Q9UIT9
1238-1338
2cqv
region a:8-108
[130730]
Cardiac myosin binding protein C, different domains [89185]
Human (Homo sapiens)
[TaxId: 9606]
[89186] (3)
SQ
Q14896
358-451, 641-770
1pd6
chain a
[104121]
2avg
region a:1-110
[127379]
1gxe
chain a
[83372]
Titin [49172]
Human (Homo sapiens), different modules
[TaxId: 9606]
[49173] (5)
1g1c
module I1
chain a
[65078]
chain b
[65079]
1tnn
module M5
chain a
[21711]
1ncu
module M5
chain a
[21709]
1tnm
module M5
chain a
[21710]
1nct
module M5
chain a
[21708]
Twitchin [49174]
Nematode (Caenorhabditis elegans)
[TaxId: 6239]
[49175] (3)
different modules
1koa
region a:6265-6361
[21712]
1wiu
chain a
[21713]
1wit
chain a
[21714]
Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]
[49176] (2)
1tiu
chain a
[21715]
1tit
chain a
[21716]
Type-1 interleukin-1 receptor [49177]
duplication: tandem repeat of 3 domains
Human (Homo sapiens)
[TaxId: 9606]
[49178] (3)
1ira
complexed with nag
region y:1-101
[21717]
region y:102-204
[21718]
region y:205-311
[21719]
1itb
region b:6-101
[21720]
region b:102-204
[21721]
region b:205-315
[21722]
1g0y
region r:6-101
[21723]
region r:102-204
[21724]
region r:205-315
[21725]
Fibroblast growth factor receptor, FGFR [49179]
Human (Homo sapiens), FGFR1
[TaxId: 9606]
[49180] (7)
2fdb
automatically matched to d1cvsc1
region p:2153-2251
[133298]
2fdb
automatically matched to d1cvsc2
region p:2252-2360
[133299]
2fdb
automatically matched to d1cvsc1
region r:3153-3251
[133300]
2fdb
automatically matched to d1cvsc2
region r:3252-3360
[133301]
1cvs
region c:149-250
[21726]
region c:251-359
[21727]
region d:149-250
[21728]
region d:251-359
[21729]
1fq9
complexed with idu, sgn, uap; mutant
region c:149-250
[21734]
region c:251-359
[21735]
region d:149-250
[21736]
region d:251-359
[21737]
1evt
complexed with so4
region c:147-250
[21730]
region c:251-359
[21731]
region d:147-250
[21732]
region d:251-359
[21733]
Human (Homo sapiens), FGFR2a
[TaxId: 9606]
[49181] (8)
3dar
automatically matched to d1djsa1
region a:153-249
[157466]
3dar
automatically matched to d1djsa1
region b:153-249
[157467]
1ev2
complexed with so4; mutant
region e:150-250
[21738]
region e:251-360
[21739]
region f:150-250
[21740]
region f:251-359
[21741]
region g:151-250
[21742]
region g:251-363
[21743]
region h:151-250
[21744]
region h:251-363
[21745]
1iil
mutant
region e:150-250
[62437]
region e:251-361
[62438]
region f:150-250
[62439]
region f:251-361
[62440]
region g:150-250
[62441]
region g:251-364
[62442]
region h:150-250
[62443]
region h:251-364
[62444]
1djs
region a:147-250
[21746]
region a:251-362
[21747]
1ii4
mutant
region e:150-250
[62404]
region e:251-361
[62405]
region f:150-250
[62406]
region f:251-361
[62407]
region g:150-250
[62408]
region g:251-361
[62409]
region h:150-250
[62410]
region h:251-361
[62411]
1e0o
complexed with 2si, ni, sgn, so4
region b:149-250
[21748]
region b:251-360
[21749]
region d:149-250
[21750]
region d:251-360
[21751]
1wvz
automatically matched to d1djsa1
region a:8-104
[121347]
Human (Homo sapiens), FGFR2b
[TaxId: 9606]
[81955] (1)
1nun
complexed with 15p, mse, so4
region b:151-250
[80735]
region b:251-359
[80736]
Human (Homo sapiens), FGFR3c
[TaxId: 9606]
[101514] (1)
1ry7
region b:150-248
[98092]
region b:249-362
[98093]
Hemolin [49182]
Duplication: tandem repeat of 4 domains, known as L1 domains
Moth (Hyalophora cecropia)
[TaxId: 7123]
[49183] (1)
1bih
complexed with po4
region a:5-98
[21752]
region a:99-209
[21753]
region a:210-306
[21754]
region a:307-395
[21755]
region b:5-98
[21756]
region b:99-209
[21757]
region b:210-306
[21758]
region b:307-395
[21759]
Semaphorin 4d Ig-like domain [101515]
Human (Homo sapiens)
[TaxId: 9606]
[101516] (1)
1olz
region a:537-628
[93341]
region b:537-628
[93344]
Axonin-1 [49184]
tandem repeat of 4 L1 domains
Chicken (Gallus gallus)
[TaxId: 9031]
[49185] (1)
1cs6
complexed with gol
region a:7-103
[21760]
region a:104-208
[21761]
region a:209-299
[21762]
region a:300-388
[21763]
Perlecan Ig3 domain [69158]
Mouse (Mus musculus)
[TaxId: 10090]
[69159] (1)
1gl4
complexed with epe, zn
chain b
[65288]
Junction adhesion molecule, JAM, C-terminal domain [49186]
Mouse (Mus musculus)
[TaxId: 10090]
[49187] (1)
1f97
complexed with mg
region a:129-238
[21764]
Human (Homo sapiens)
[TaxId: 9606]
[89187] (1)
1nbq
region a:130-233
[85533]
region b:130-233
[85535]
Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain [81956]
Mouse (Mus musculus)
[TaxId: 10090]
[81957] (1)
1l6z
complexed with man, nag
region a:108-203
[77771]
Second domain of the Flt-1 receptor [49188]
Human (Homo sapiens)
[TaxId: 9606]
[49189] (5)
1flt
chain x
[21765]
chain y
[21766]
1rv6
complexed with b3p
chain x
[97914]
chain y
[97915]
1qty
complex with VEGF
chain x
[21767]
chain y
[21768]
chain t
[21769]
chain u
[21770]
1qsz
chain a
[21772]
1qsv
chain a
[21771]
Tyrosine-protein kinase receptor tyro3, second domain [101517]
Human (Homo sapiens)
[TaxId: 9606]
[101518] (1)
1rhf
complexed with act, epe, zn
region a:98-182
[97470]
region b:98-182
[97472]
High affinity nerve growth factor receptor TrkA, different domains [49190]
Human (Homo sapiens)
[TaxId: 9606]
[49191] (7)
1he7
swapped N-terminal strand dimer; only one subunit is in the PDB entry
complexed with gol
chain a
[60970]
1www
chain x
[21773]
chain y
[21774]
1wwa
swapped N-terminal strand dimer
chain x
[21775]
chain y
[21776]
2ifg
1st Iset domain
complexed with bma, man, nag, ndg
region a:192-283
[137335]
2ifg
automatically matched to d1he7a_
complexed with bma, man, nag, ndg
region a:285-382
[137336]
2ifg
automatically matched to 2IFG A:192-283
complexed with bma, man, nag, ndg
region b:192-283
[137338]
2ifg
automatically matched to d1he7a_
complexed with bma, man, nag, ndg
region b:285-382
[137339]
Ligand binding domain of trkB receptor [49192]
Human (Homo sapiens)
[TaxId: 9606]
[49193] (2)
1wwb
swapped N-terminal strand dimer
chain x
[21777]
1hcf
complexed with so4
chain x
[65790]
chain y
[65791]
NT3 binding domain of trkC receptor [49194]
Human (Homo sapiens)
[TaxId: 9606]
[49195] (1)
1wwc
swapped N-terminal strand dimer
mutant
chain a
[21778]
Fc gamma receptor ectodomain (CD32) [49196]
possibly an intermediate structure between the I set and FnIII domains
Human (Homo sapiens), IIa
[TaxId: 9606]
[49197] (2)
1fcg
mutant
region a:4-88
[21779]
region a:89-174
[21780]
1h9v
region a:1-88
[60851]
region a:89-172
[60852]
Human (Homo sapiens), IIb
[TaxId: 9606]
[49198] (1)
2fcb
region a:6-90
[21781]
region a:91-178
[21782]
Human (Homo sapiens), III
[TaxId: 9606]
[49199] (5)
SQ
O75015
23-189
1fnl
complexed with hg
region a:3-86
[21783]
region a:87-175
[21784]
1e4j
region a:2-86
[21785]
region a:87-172
[21786]
1t83
complexed with fuc, gal, hg2, man, nag
region c:5-86
[106647]
region c:87-171
[106648]
1t89
complexed with fuc, gal, man, nag
region c:5-86
[106661]
region c:87-171
[106662]
1e4k
complexed with fuc, gal, man, nag
region c:1-86
[21787]
region c:87-172
[21788]
IgE high affinity receptor alpha subunit [49200]
possibly an intermediate structure between the I set and FnIII domains
Human (Homo sapiens)
[TaxId: 9606]
[49201] (7)
SQ
P12319
29-196
1f2q
complexed with man, nag
region a:4-85
[21789]
region a:86-174
[21790]
1rpq
complexed with cit, man, nag, so4
region a:4-85
[105028]
region a:86-171
[105029]
region b:4-85
[105030]
region b:86-171
[105031]
region c:4-85
[105032]
region c:86-171
[105033]
region d:4-85
[105034]
region d:86-171
[105035]
1j86
complexed with fuc, man, nag
region a:1-85
[62711]
region a:86-174
[62712]
region b:1-85
[62713]
region b:86-173
[62714]
1j88
complexed with man, nag
region a:4-85
[62717]
region a:86-171
[62718]
region b:4-85
[62719]
region b:86-171
[62720]
region c:4-85
[62721]
region c:86-171
[62722]
region d:4-85
[62723]
region d:86-171
[62724]
region e:4-85
[62725]
region e:86-171
[62726]
1f6a
complexed with cps, fuc, man, nag, so4; mutant
region a:1-85
[21791]
region a:86-173
[21792]
1j87
complexed with fuc, man, nag; mutant
region a:1-85
[62715]
region a:86-171
[62716]
1j89
complexed with man, nag
region a:4-85
[62727]
region a:86-171
[62728]
region b:4-85
[62729]
region b:86-171
[62730]
region c:4-85
[62731]
region c:86-171
[62732]
region d:4-85
[62733]
region d:86-171
[62734]
region e:4-85
[62735]
region e:86-171
[62736]
Ig alpha Fc receptor, FCARI (CD89) [89188]
possibly an intermediate structure between the I set and FnIII domains
Human (Homo sapiens)
[TaxId: 9606]
[89189] (3)
1uct
region a:2-100
[88467]
region a:101-196
[88468]
1ovz
complexed with nag, trs
region a:6-100
[87473]
region a:101-198
[87474]
region b:2-100
[87475]
region b:101-193
[87476]
1ow0
complexed with IgA1 Fc
complexed with fuc, gal, man, nag, sia
region c:6-100
[87481]
region c:101-195
[87482]
region d:6-100
[87483]
region d:101-195
[87484]
Killer cell inhibitory receptor [49202]
possibly an intermediate structure between the I set and FnIII domains
Human (Homo sapiens), kir2dl3
[TaxId: 9606]
[49203] (2)
1efx
region d:4-103
[21793]
region d:104-200
[21794]
region e:4-103
[21795]
region e:104-200
[21796]
1b6u
region a:5-103
[21797]
region a:104-203
[21798]
Human (Homo sapiens), kir2ds3, CD158j
[TaxId: 9606]
[89190] (1)
1m4k
complexed with egl, so4
region a:8-103
[84796]
region a:104-200
[84797]
Human (Homo sapiens), p58-cl42 kir
[TaxId: 9606]
[49204] (2)
1nkr
region a:6-101
[21799]
region a:102-200
[21800]
1im9
region d:6-101
[62585]
region d:102-200
[62586]
Human (Homo sapiens), 2dl2
[TaxId: 9606]
[49205] (2)
2dli
region a:5-101
[21801]
region a:102-200
[21802]
2dl2
region a:4-101
[21803]
region a:102-200
[21804]
Ligand binding domain of lir-1 (ilt2) [49206]
possibly an intermediate structure between the I set and FnIII domains
Human (Homo sapiens)
[TaxId: 9606]
[49207] (8)
SQ
Q8NHL6
25-218
1ugn
mutant
region a:2-97
[107828]
region a:98-195
[107829]
1g0x
region a:2-97
[21805]
region a:98-198
[21806]
3d2u
automatically matched to d1g0xa1
complexed with bma, fuc, man, nag; mutant
region d:4-97
[157256]
3d2u
automatically matched to d1g0xa2
complexed with bma, fuc, man, nag; mutant
region d:98-198
[157257]
3d2u
automatically matched to d1g0xa1
complexed with bma, fuc, man, nag; mutant
region h:4-97
[157259]
3d2u
automatically matched to d1g0xa2
complexed with bma, fuc, man, nag; mutant
region h:98-198
[157260]
1ufu
region a:2-97
[107819]
region a:98-195
[107820]
1p7q
region d:4-97
[94315]
region d:98-198
[94316]
Ligand binding domain of NK receptor NKp46 [101519]
possibly an intermediate structure between the I set and FnIII domains
Human (Homo sapiens)
[TaxId: 9606]
[101520] (2)
1oll
complexed with edo
region a:1-95
[93313]
region a:96-188
[93314]
1p6f
region a:4-98
[94169]
region a:99-191
[94170]
The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain [63665]
Human (Homo sapiens)
[TaxId: 9606]
[63666] (7)
3d85
automatically matched to d1f42a1
complexed with imd, mpd; mutant
region d:1-87
[157439]
3duh
automatically matched to d1f42a1
complexed with nag
region a:1-87
[157882]
3duh
automatically matched to d1f42a1
complexed with nag
region b:1-87
[157885]
1f42
complexed with man, mnb, nag
region a:1-87
[59636]
1f45
complexed with man, nag; mutant
region a:1-87
[59639]
3d87
automatically matched to d1f42a1
complexed with k, man, po4; mutant
region b:1-87
[157442]
3d87
automatically matched to d1f42a1
complexed with k, man, po4; mutant
region d:1-87
[157445]
Interleukin-6 receptor alpha chain, N-terminal domain [81958]
Human (Homo sapiens)
[TaxId: 9606]
[81959] (1)
1n26
complexed with cys, man, nag, so4
region a:1-93
[79850]
CD3 gamma chain ectodomain fragment [69160]
possibly an intermediate structure between the I set and FnIII domains
Mouse (Mus musculus)
[TaxId: 10090]
[69161] (1)
1jbj
a single-chain construct with epsilon chain domain, includes part of the linker
region a:101-186
[66482]
Human (Homo sapiens)
[TaxId: 9606]
[110050] (1)
SQ
P09693
# CD3G_HUMAN T-cell surface glycoprotein CD3 gamma chain precursor
1sy6
MQ
P09693
P07766
# artificial chimera
region a:1-81
[106111]
CD3 epsilon chain ectodomain fragment [69162]
possibly an intermediate structure between the I set and FnIII domains
Mouse (Mus musculus)
[TaxId: 10090]
[69163] (2)
SQ
P22646
22-100
1jbj
a single-chain construct with gamma chain domain, includes part of the linker
region a:1-100
[66483]
1xmw
MQ
P22646
P18438
# artificial chimera
region a:1-79
[115566]
Human (Homo sapiens)
[TaxId: 9606]
[110051] (2)
SQ
P07766
33-123 ! SQ
P07766
# CD3E_HUMAN T-cell surface glycoprotein CD3 epsilon chain precursor
1xiw
chain a
[115367]
chain e
[115371]
1sy6
MQ
P09693
P07766
# artificial chimera
region a:118-203
[106112]
Sheep (Ovis aries)
[TaxId: 9940]
[117040] (1)
SQ
P18438
22-88
1xmw
MQ
P22646
P18438
# artificial chimera
region a:113-178
[115567]
B and T lymphocyte attenuator, Btla [117041]
Mouse (Mus musculus)
[TaxId: 10090]
[117042] (1)
SQ
Q7TSA3
40-143
1xau
complexed with cd
chain a
[115041]
CD3 delta chain ectodomain fragment [117043]
Human (Homo sapiens)
[TaxId: 9606]
[117044] (1)
SQ
P04234
23-95
1xiw
chain b
[115368]
chain f
[115372]
Myosin-binding protein C, slow-type [141013]
Human (Homo sapiens)
[TaxId: 9606]
[141014] (2)
SQ
Q00872
342-431! SQ
Q00872
58-170
1x44
3rd Iset domain
region a:8-97
[121678]
2dav
1st Iset domain
region a:8-120
[131357]
Receptor-type tyrosine-protein phosphatase mu [141015]
Human (Homo sapiens)
[TaxId: 9606]
[141016] (1)
SQ
P28827
184-279
2c9a
complexed with ful, man, na, nag, ndg
region a:184-279
[130129]
Cervical EMMPRIN [158877]
contains two Ig-domains in the N-terminal part
Human (Homo sapiens)
[TaxId: 9606]
[158878] (8)
SQ
Q54A51
103-203! SQ
Q54A51
23-102
3b5h
complexed with act
region a:103-203
[154838]
3b5h
complexed with act
region a:23-102
[154839]
3b5h
automatically matched to 3B5H A:103-203
complexed with act
region b:103-203
[154840]
3b5h
automatically matched to 3B5H A:23-102
complexed with act
region b:23-102
[154841]
3b5h
automatically matched to 3B5H A:103-203
complexed with act
region c:103-202
[154842]
3b5h
automatically matched to 3B5H A:23-102
complexed with act
region c:23-102
[154843]
3b5h
automatically matched to 3B5H A:103-203
complexed with act
region d:103-201
[154844]
3b5h
automatically matched to 3B5H A:23-102
complexed with act
region d:23-102
[154845]
Ligand binding domain of lir-2 (ilt4) [158879]
Human (Homo sapiens)
[TaxId: 9606]
[158880] (2)
SQ
Q8N423
120-218! SQ
Q8N423
26-109
2dyp
mutant
region d:3-96
[145108]
2dyp
mutant
region d:97-195
[145109]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk