Structural Classification of Proteins
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Superfamily: PapD-like

contains PP switch between strands D and C'
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: PapD-like [49354]
    contains PP switch between strands D and C'
    link to SUPERFAMILY database - Superfamily

Families:

  1. Pilus chaperone [49355] (5)
    1. Pilus chaperone PapD, N-domain [49356]
      consists of two domains of this fold; domain 2 has an additional strand at the C-terminus
      1. Escherichia coli [TaxId: 562] [49357] (12)
        1. 2j2z picpicxrefxref
          automatically matched to d3dpa_1
          complexed with co, so4
          1. region a:1-124 [137974] picpiclink
        2. 1qpx picpicxref
          mutant
          1. region a:1-124 [22318] picpiclink
          2. region b:7-124 [22319] picpiclink
        3. 1n0l picpicxrefxref
          complexed with mse; mutant
          1. region a:1-124 [79744] picpiclink
          2. region c:1-124 [79747] picpiclink
        4. 2uy6 picpicxrefxref
          automatically matched to d3dpa_1
          mutant
          1. region a:1-124 [140025] picpiclink
        5. 1qpp picpicxref
          mutant
          1. region a:1-124 [22320] picpiclink
          2. region b:1-122 [22321] picpiclink
        6. 2j7l picpicxref
          automatically matched to d3dpa_1
          complexed with xc2
          1. region a:1-124 [138117] picpiclink
        7. 1pdk picpicxrefxref
          1. region a:1-124 [22322] picpiclink
        8. 2uy7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d3dpa_1
          complexed with so4; mutant
          1. region a:1-124 [140027] picpiclink
        9. 2uy7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d3dpa_1
          complexed with so4; mutant
          1. region c:1-124 [140029] picpiclink
        10. 2uy7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d3dpa_1
          complexed with so4; mutant
          1. region e:1-124 [140031] picpiclink
        11. 2uy7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d3dpa_1
          complexed with so4; mutant
          1. region g:1-124 [140033] picpiclink
        12. 3dpa picpicxref
          CA-atoms only
          1. region a:1-124 [22323] picpiclink
    2. Periplasmic chaperone FimC [49358]
      1. Escherichia coli [TaxId: 562] [49359] (6)
        1. 3bwu picpicxrefxref
          automatically matched to d1bf8a1
          complexed with edo, peg
          1. region c:1-121 [155699] picpiclink
        2. 1ze3 picpicxrefxrefxref
          automatically matched to d1bf8_1
          complexed with edo
          1. region c:1-121 [124974] picpiclink
        3. 1klf picpicxrefxref
          complexed with man
          1. region a:1-121 [72682] picpiclink
          2. region c:1-121 [72686] picpiclink
          3. region e:1-121 [72690] picpiclink
          4. region g:1-121 [72694] picpiclink
          5. region i:1-121 [72698] picpiclink
          6. region k:1-121 [72702] picpiclink
          7. region m:1-121 [72706] picpiclink
          8. region o:1-121 [72710] picpiclink
        4. 1kiu picpicxrefxref
          complexed with mma; mutant
          1. region a:1-121 [72523] picpiclink
          2. region c:1-121 [72527] picpiclink
          3. region e:1-121 [72531] picpiclink
          4. region g:1-121 [72535] picpiclink
          5. region i:1-121 [72539] picpiclink
          6. region k:1-121 [72543] picpiclink
          7. region m:1-121 [72547] picpiclink
          8. region o:1-121 [72551] picpiclink
        5. 1qun picpicxrefxref
          1. region a:1-121 [22324] picpiclink
          2. region c:1-121 [22325] picpiclink
          3. region e:1-121 [22326] picpiclink
          4. region g:1-121 [22327] picpiclink
          5. region i:1-121 [22328] picpiclink
          6. region k:1-121 [22329] picpiclink
          7. region m:1-121 [22330] picpiclink
          8. region o:1-121 [22331] picpiclink
        6. 1bf8 picpicxref
          1. region a:1-121 [22332] picpiclink
    3. Periplasmic chaperone SfaE [74860]
      1. Escherichia coli [TaxId: 562] [74861] (1)
        1. 1l4i picpicxref
          1. region a:1-120 [73564] picpiclink
          2. region b:1-120 [73566] picpiclink
    4. Chaperone protein Caf1m [89205]
      1. Yersinia pestis [TaxId: 632] [89206] (9)
        1. 1p5v picpicxrefxref
          1. region a:7-147 [87812] picpiclink
        2. 1p5u picpicxrefxref
          mutant
          1. region a:9-147 [87808] picpiclink
        3. 1z9s picpicxrefxref
          automatically matched to d1p5va1
          1. region a:9-147 [124768] picpiclink
        4. 2os7 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p5va1
          1. region a:9-147 [139278] picpiclink
        5. 2os7 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p5va1
          1. region b:9-147 [139280] picpiclink
        6. 2os7 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p5va1
          1. region c:9-147 [139282] picpiclink
        7. 2os7 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p5va1
          1. region d:9-147 [139284] picpiclink
        8. 2os7 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p5va1
          1. region e:9-147 [139286] picpiclink
        9. 2os7 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p5va1
          1. region f:9-147 [139288] picpiclink
    5. Periplasmic chaperone SafB [158907]
      1. Salmonella typhimurium [TaxId: 90371] [158908] (2)
        SQ Q8ZRK3 21-151
        1. 2co7 picpicxrefxref
          automatically matched to 2CO6 B:5-135
          complexed with so4; mutant
          1. region b:8-135 [145049] picpiclink
        2. 2co6 picpicxrefxref
          1. region b:5-135 [145047] picpiclink
  2. MSP-like [49360] (5)
    Pfam 00635
    1. Major sperm protein, MSP [49361]
      1. Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253] [49362] (3)
        1. 1msp picpic
          1. chain a [22333] picpiclink
          2. chain b [22334] picpiclink
        2. 2msp picpic
          mutant
          1. chain a [22335] picpiclink
          2. chain b [22336] picpiclink
          3. chain c [22337] picpiclink
          4. chain d [22338] picpiclink
          5. chain e [22339] picpiclink
          6. chain f [22340] picpiclink
          7. chain g [22341] picpiclink
          8. chain h [22342] picpiclink
        3. 3msp picpic
          1. chain a [22343] picpiclink
          2. chain b [22344] picpiclink
      2. Nematode (Caenorhabditis elegans) [TaxId: 6239] [74862] (1)
        1. 1grw picpic
          1. chain a [70391] picpiclink
          2. chain b [70392] picpiclink
          3. chain c [70393] picpiclink
          4. chain d [70394] picpiclink
    2. WR4 [89207]
      1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [89208] (1)
        4L504 (ZC168.6) gene product
        1. 1m1s picpic
          structural genomics
          complexed with mse
          1. chain a [84747] picpiclink
    3. SSP-19 [101540]
      1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [101541] (1)
        C55C2.2 gene product
        1. 1row picpic
          1. chain a [97676] picpiclink
          2. chain b [97677] picpiclink
    4. MSP domain containing protein 2, Mospd2 [117061]
      1. Mouse (Mus musculus) [TaxId: 10090] [117062] (1)
        SQ Q9CWP6 317-455
        1. 1wic picpic
          Structural genomics target
          1. chain a [114666] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk