Family: Class II viral fusion proteins C-terminal domain

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: Immunoglobulin-like beta-sandwich [48725]
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands
4. Superfamily: E set domains [81296]
   "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
   uperfamily
5. Family: Class II viral fusion proteins C-terminal domain [81284]

Protein Domains:

1. Envelope glycoprotein [49213]
   1. Tick-borne encephalitis virus [TaxId: 11084] [49214] (2)
      1. 1svb
         complexed with nag
         1. region a:303-395 [21814]
      2. 1urz
         1. region a:303-401 [99838]
         2. region b:303-401 [99840]
         3. region c:303-401 [99842]
         4. region d:303-401 [99844]
         5. region e:303-401 [99846]
         6. region f:303-401 [99848]
   2. Dengue virus type 2 [TaxId: 11060] [89194] (12)
      SQ P12823 281-675 # 99% sequence identity
      1. 1ok8
         complexed with cl, nag
         1. region a:298-394 [93236]
      2. 1oke
         complexed with afl, bma, bog, nag
         1. region a:298-394 [87054]
         2. region b:298-394 [87056]
      3. 1oan
         complexed with afl, bma, na, nag
         1. region a:298-394 [86740]
         2. region b:298-394 [86742]
      4. 1tg8
         complexed with nag
         1. region a:298-395 [106892]
      5. 2r29
         automatically matched to d1tgea1
         1. region a:298-394 [151533]
      6. 2jsf
         automatically matched to d1tgea1
         1. region a:10-107 [148191]
      7. 2r69
         automatically matched to d1tgea1
         1. region a:298-394 [151601]
      8. 1thd
         1. region a:298-395 [106910]
         2. region b:298-395 [106912]
         3. region c:298-395 [106914]
      9. 1tge
         1. region a:298-395 [106894]
         2. region b:298-395 [106896]
         3. region c:298-395 [106898]
      10. 2b6b
          automatically matched to d1tg8a1
          1. region a:298-394 [127976]
      11. 2b6b
          automatically matched to d1tg8a1
          1. region b:298-394 [127978]
      12. 2b6b
          automatically matched to d1tg8a1
          1. region c:298-394 [127980]
   3. Japanese encephalitis virus [TaxId: 11072] [101527] (1)
      1. 1pjw
         C-terminal domain only
         1. chain a [94793]
   4. West Nile virus [TaxId: 11082] [110056] (5)
      SQ Q8JU42 586-696
      1. 1ztx
         automatically matched to d1s6na_
         1. region e:300-400 [125658]
      2. 2p5p
         automatically matched to d1s6na_
         1. region a:300-400 [149257]
      3. 2p5p
         automatically matched to d1s6na_
         1. region b:300-400 [149258]
      4. 2p5p
         automatically matched to d1s6na_
         1. region c:300-400 [149259]
      5. 1s6n
         1. chain a [105311]
   5. Langat virus [TaxId: 11085] [141022] (2)
      SQ P29838 583-765
      1. 2gg1
         1. region a:303-395 [135119]
      2. 1z66
         automatically matched to 2GG1 A:303-395
         1. region a:303-395 [124506]
2. Fusion glycoprotein E1 [74840]
   1. Semliki forest virus [TaxId: 11033] [74841] (5)
      1. 2v33
         automatically matched to d1rera1
         complexed with no3
         1. region a:293-382 [152439]
      2. 2v33
         automatically matched to d1rera1
         complexed with no3
         1. region b:293-382 [152440]
      3. 2ala
         automatically matched to d1i9wa1
         1. region a:293-380 [126973]
      4. 1rer
         complexed with br, fuc, ho, man, nag, po4
         1. region a:293-391 [97327]
         2. region b:293-391 [97329]
         3. region c:293-391 [97331]
      5. 1i9w
         1. region a:293-380 [71163]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk