Structural Classification of Proteins
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Family: Periplasmic domain of cytochrome c oxidase subunit II

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Cupredoxin-like [49502]
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. Superfamily: Cupredoxins [49503]
    contains copper-binding site
    link to SUPERFAMILY database - Superfamily
  5. Family: Periplasmic domain of cytochrome c oxidase subunit II [49541]

Protein Domains:

  1. Quinol oxidase (CyoA) [49542]
    1. Escherichia coli [TaxId: 562] [49543] (3)
      1. 1cyx picpic
        complexed with cua; mutant
        1. chain a [23023] picpiclink
      2. 1cyw picpic
        1. chain a [23024] picpiclink
      3. 1fft picpicxrefxrefxref
        complexed with cu, hem, heo
        1. region b:118-283 [23025] picpiclink
        2. region g:118-283 [23026] picpiclink
  2. Cytochrome c oxidase [49544]
    1. Cow (Bos taurus) [TaxId: 9913] [49545] (21)
      1. 1v54 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:91-227 [100322] picpiclink
        2. region o:91-227 [100336] picpiclink
      2. 2dyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:91-227 [131900] picpiclink
      3. 2dyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region o:91-227 [131914] picpiclink
      4. 1v55 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:91-227 [100350] picpiclink
        2. region o:91-227 [100364] picpiclink
      5. 2eij picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:91-227 [132140] picpiclink
      6. 2eij picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:91-227 [132154] picpiclink
      7. 2eil picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:91-227 [132196] picpiclink
      8. 2eil picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:91-227 [132210] picpiclink
      9. 2eik picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:91-227 [132168] picpiclink
      10. 2eik picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:91-227 [132182] picpiclink
      11. 2dys picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:91-227 [131928] picpiclink
      12. 2dys picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region o:91-227 [131942] picpiclink
      13. 2occ picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cu, hea, mg, na, per, zn
        1. region b:91-227 [23027] picpiclink
        2. region o:91-227 [23028] picpiclink
      14. 1ocr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cu, hea, mg, na, zn
        1. region b:91-227 [23029] picpiclink
        2. region o:91-227 [23030] picpiclink
      15. 2eim picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:91-227 [132224] picpiclink
      16. 2eim picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:91-227 [132238] picpiclink
      17. 2ein picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:91-227 [132252] picpiclink
      18. 2ein picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb1
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:91-227 [132266] picpiclink
      19. 1occ picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cu, hea, mg, zn
        1. region b:91-227 [23031] picpiclink
        2. region o:91-227 [23032] picpiclink
      20. 1ocz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with azi, cu, hea, mg, na, zn
        1. region b:91-227 [23033] picpiclink
        2. region o:91-227 [23034] picpiclink
      21. 1oco picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cmo, cu, hea, mg, na, zn
        1. region b:91-227 [23035] picpiclink
        2. region o:91-227 [23036] picpiclink
    2. Paracoccus denitrificans [TaxId: 266] [49546] (3)
      1. 3ehb picpicxrefxrefxref
        automatically matched to d1ar1b1
        complexed with ca, cu, hea, lda, lmt, mg, per; mutant
        1. region b:108-252 [158150] picpiclink
      2. 1ar1 picpicxrefxrefxrefxref
        complexed with ca, cu, hea, lda, mg
        1. region b:108-252 [23037] picpiclink
      3. 1qle picpicxrefxrefxrefxrefxrefxref
        1. region b:108-252 [23038] picpiclink
    3. Rhodobacter sphaeroides [TaxId: 1063] [74870] (6)
      1. 3dtu picpicxrefxrefxrefxref
        automatically matched to d1m56b1
        complexed with ca, cd, cu, dmu, dxc, hea, hto, mg, oh, po4, trd
        1. region b:130-281 [157857] picpiclink
      2. 3dtu picpicxrefxrefxrefxref
        automatically matched to d1m56b1
        complexed with ca, cd, cu, dmu, dxc, hea, hto, mg, oh, po4, trd
        1. region d:130-281 [157860] picpiclink
      3. 2gsm picpicxrefxrefxrefxref
        automatically matched to d1m56b1
        complexed with ca, cd, cu, dmu, hea, mg, oh, trd
        1. region b:130-281 [135590] picpiclink
      4. 2gsm picpicxrefxrefxrefxref
        automatically matched to d1m56b1
        complexed with ca, cd, cu, dmu, hea, mg, oh, trd
        1. region d:130-281 [135593] picpiclink
      5. 1m56 picpicxrefxrefxrefxref
        complexed with ca, cu, hea, mg, peh
        1. region b:130-289 [74472] picpiclink
        2. region h:130-289 [74477] picpiclink
      6. 1m57 picpicxrefxrefxrefxref
        complexed with ca, cu, hea, mg, peh; mutant
        1. region b:130-289 [74482] picpiclink
        2. region h:130-289 [74487] picpiclink
    4. Thermus thermophilus, ba3 type [TaxId: 274] [49547] (7)
      1. 2cua picpic
        complexed with cua, zn
        1. chain a [23039] picpiclink
        2. chain b [23040] picpiclink
      2. 1xme picpicxrefxrefxref
        automatically matched to d2cuab_
        complexed with bng, cu, cua, gol, has, hem
        1. region b:37-168 [122144] picpiclink
      3. 1ehk picpicxrefxrefxref
        complexed with 1cu, bng, cua, has, hem
        1. region b:41-168 [23041] picpiclink
      4. 2qpe picpicxrefxref
        automatically matched to d2cuab_
        complexed with cu1, cua, has, hem; mutant
        1. region b:37-168 [151202] picpiclink
      5. 3bvd picpicxrefxref
        automatically matched to d2cuab_
        complexed with cu, cua, has, hem, xe; mutant
        1. region b:37-168 [155660] picpiclink
      6. 2fwl picpicxref
        automatically matched to d2cuab_
        complexed with cua, hec
        1. region b:35-168 [134248] picpiclink
      7. 2qpd picpicxrefxref
        automatically matched to d2cuab_
        complexed with cu1, cua, has, hem; mutant
        1. region b:37-168 [151199] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk