Structural Classification of Proteins
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Fold: Streptavidin-like

barrel, closed; n=8, S=10; meander

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Streptavidin-like [50875]
    barrel, closed; n=8, S=10; meander

Superfamilies:

  1. Avidin/streptavidin [50876] (1)
    link to SUPERFAMILY database - Superfamily
    1. Avidin/streptavidin [50877] (2)
      1. Streptavidin [50878]
        1. Streptomyces avidinii [TaxId: 1895] [50879] (122) picpic
      2. Avidin [50880]
        1. Chicken (Gallus gallus) [TaxId: 9031] [50881] (16) picpic
  2. beta-Barrel protease inhibitors [50882] (2)
    link to SUPERFAMILY database - Superfamily
    1. Metalloprotease inhibitor [50883] (2)
      1. Metalloprotease inhibitor [50884]
        1. Erwinia chrysanthemi [TaxId: 556] [50885] (1) picpic
        2. Pseudomonas aeruginosa, aprin [TaxId: 287] [63813] (1) picpic
    2. Staphostatin [101869] (2)
      cysteine protease inhibitor; topology permutation: strand 3 is replaced with the N-terminal extra strand
      1. Staphostatin A (SAV1910, SA1726) [101870]
        1. Staphylococcus aureus [TaxId: 1280] [101871] (1) picpic
      2. Staphostatin B (SspC) [101872]
        1. Staphylococcus aureus [TaxId: 1280] [101873] (5) picpic
  3. D-aminopeptidase, middle and C-terminal domains [50886] (1)
    link to SUPERFAMILY database - Superfamily
    1. D-aminopeptidase, middle and C-terminal domains [50887] (1)
      1. D-aminopeptidase, middle and C-terminal domains [50888]
        duplication: both domains have this barrel fold
        1. Ochrobactrum anthropi [TaxId: 529] [50889] (1) picpic
  4. Quinohemoprotein amine dehydrogenase A chain, domain 3 [69298] (1)
    link to SUPERFAMILY database - Superfamily
    1. Quinohemoprotein amine dehydrogenase A chain, domain 3 [69299] (2)
      1. Quinohemoprotein amine dehydrogenase A chain, domain 3 [69300]
        1. Paracoccus denitrificans [TaxId: 266] [69301] (2) picpic
        2. Pseudomonas putida [TaxId: 303] [69302] (2) picpic
  5. Dipeptidyl peptidase I (cathepsin C), exclusion domain [75001] (1)
    link to SUPERFAMILY database - Superfamily
    1. Dipeptidyl peptidase I (cathepsin C), exclusion domain [75002] (2)
      1. Dipeptidyl peptidase I (cathepsin C), exclusion domain [75003]
        1. Human (Homo sapiens) [TaxId: 9606] [75004] (3) picpic
        2. Rat (Rattus norvegicus) [TaxId: 10116] [82160] (1) picpic
  6. YceI-like [101874] (1)
    link to SUPERFAMILY database - Superfamily
    1. YceI-like [101875] (2)
      Pfam 04264
      1. Polyisoprenoid-binding protein TTHA0802 (TT1927B) [101876]
        1. Thermus thermophilus [TaxId: 274] [101877] (1) picpic
          SQ P83815
          structural genomics
      2. Lipid binding protein YceI [117267]
        1. Escherichia coli [TaxId: 562] [117268] (1) picpic
          SQ P0A8X2
  7. Extracellular hemoglobin linker subunit, receptor domain [141480] (1)
    link to SUPERFAMILY database - Superfamily
    1. Extracellular hemoglobin linker subunit, receptor domain [141481] (3)
      1. Hemoglobin linker chain l1 [141482]
        1. Common earthworm (Lumbricus terrestris) [TaxId: 6398] [141483] (1) picpic
          SQ Q9GV76 127-240
      2. Extracellular hemoglobin linker l3 subunit [141484]
        1. Common earthworm (Lumbricus terrestris) [TaxId: 6398] [141485] (1) picpic
          SQ Q2I742 119-240
      3. Extracellular hemoglobin linker l2 subunit [141486]
        1. Common earthworm (Lumbricus terrestris) [TaxId: 6398] [141487] (1) picpic
          SQ Q2I743 139-299
  8. YdhA-like [141488] (1)
    link to SUPERFAMILY database - Superfamily
    1. YdhA-like [141489] (1)
      1. Hypothetical protein YdhA [141490]
        1. Escherichia coli [TaxId: 562] [141491] (1) picpic
          SQ P28224 28-109
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk