Structural Classification of Proteins
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Fold: Cyclophilin-like

barrel, closed; n=8, S=10; complex topology

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Cyclophilin-like [50890]
    barrel, closed; n=8, S=10; complex topology

Superfamilies:

  1. Cyclophilin-like [50891] (4)
    link to SUPERFAMILY database - Superfamily
    1. Cyclophilin (peptidylprolyl isomerase) [50892] (25)
      1. Cyclophilin (eukaryotic) [50893]
        1. Human (Homo sapiens), variant A [TaxId: 9606] [50894] (50)
          SQ P05092
          1. 1w8m picpic
            complexed with e1p
            1. chain a [114370] picpiclink
          2. 1ynd picpic
            automatically matched to d1ak4a_
            complexed with sfa
            1. region a:2-165 [123721] picpiclink
          3. 1ynd picpic
            automatically matched to d1ak4a_
            complexed with sfa
            1. region b:2-165 [123722] picpiclink
          4. 2cpl picpic
            1. chain a [27420] picpiclink
          5. 1w8v picpic
            1. chain a [114377] picpiclink
          6. 2cyh picpic
            1. chain a [27421] picpiclink
          7. 1cwk picpic
            complexed with tmd
            1. chain a [27422] picpiclink
          8. 1m9f picpicxref
            mutant
            1. chain a [84898] picpiclink
            2. chain b [84899] picpiclink
          9. 1cwl picpic
            complexed with aba, mgy, mhl
            1. chain a [27423] picpiclink
          10. 1m9x picpicxref
            mutant
            1. chain a [84905] picpiclink
            2. chain b [84906] picpiclink
            3. chain e [84909] picpiclink
            4. chain f [84910] picpiclink
          11. 1mik picpic
            complexed with dhn
            1. chain a [27424] picpiclink
          12. 1w8l picpic
            complexed with 1p3
            1. chain a [114369] picpiclink
          13. 1cwj picpic
            complexed with mnv, tbm
            1. chain a [27425] picpiclink
          14. 1fgl picpic
            1. chain a [27426] picpiclink
          15. 1m9e picpicxref
            mutant
            1. chain a [84894] picpiclink
            2. chain b [84895] picpiclink
          16. 1bck picpic
            1. chain a [27427] picpiclink
          17. 1cwf picpic
            1. chain a [27429] picpiclink
          18. 1cwc picpic
            complexed with aba, mnl
            1. chain a [27428] picpiclink
          19. 2alf picpic
            complexed with mg; mutant
            1. region a:2-165 [126975] picpiclink
          20. 1nmk picpic
            complexed with sfm
            1. chain a [85875] picpiclink
            2. chain b [85876] picpiclink
          21. 3cyh picpic
            1. chain a [27432] picpiclink
          22. 1m9d picpicxref
            mutant
            1. chain a [84890] picpiclink
            2. chain b [84891] picpiclink
          23. 1m9y picpicxref
            mutant
            1. chain a [84913] picpiclink
            2. chain b [84914] picpiclink
            3. chain e [84917] picpiclink
            4. chain f [84918] picpiclink
          24. 1cwm picpic
            complexed with aba, iml, tmb
            1. chain a [27433] picpiclink
          25. 1cwh picpic
            complexed with aba, dse
            1. chain a [27430] picpiclink
          26. 2rma picpic
            complexed with aba
            1. chain a [27435] picpiclink
            2. chain c [27436] picpiclink
            3. chain e [27437] picpiclink
            4. chain g [27438] picpiclink
            5. chain i [27439] picpiclink
            6. chain k [27440] picpiclink
            7. chain m [27441] picpiclink
            8. chain o [27442] picpiclink
            9. chain q [27443] picpiclink
            10. chain s [27444] picpiclink
          27. 1cwo picpic
            complexed with vad
            1. chain a [27445] picpiclink
          28. 1cwa picpic
            complexed with aba
            1. chain a [27434] picpiclink
          29. 2rmb picpic
            complexed with aba, dmt
            1. chain a [27446] picpiclink
            2. chain c [27447] picpiclink
            3. chain e [27448] picpiclink
            4. chain g [27449] picpiclink
            5. chain i [27450] picpiclink
            6. chain k [27451] picpiclink
            7. chain m [27452] picpiclink
            8. chain o [27453] picpiclink
            9. chain q [27454] picpiclink
            10. chain s [27455] picpiclink
          30. 1vbs picpic
            complexed with nit
            1. chain a [27456] picpiclink
          31. 4cyh picpic
            1. chain a [27457] picpiclink
          32. 1cwi picpic
            1. chain a [27458] picpiclink
          33. 1m9c picpicxref
            1. chain a [84886] picpiclink
            2. chain b [84887] picpiclink
          34. 1cwb picpic
            complexed with aba, dmt
            1. chain a [27459] picpiclink
          35. 5cyh picpic
            1. chain a [27460] picpiclink
          36. 1awq picpic
            1. chain a [27461] picpiclink
          37. 1zkf picpic
            automatically matched to d1ak4a_
            complexed with nit, sin
            1. region a:2-165 [125192] picpiclink
          38. 1zkf picpic
            automatically matched to d1ak4a_
            complexed with nit, sin
            1. region b:2-165 [125193] picpiclink
          39. 1vbt picpic
            complexed with alt, nit
            1. chain a [27462] picpiclink
            2. chain b [27463] picpiclink
          40. 1rmh picpic
            complexed with nit, sin
            1. chain a [27470] picpiclink
            2. chain b [27471] picpiclink
          41. 1awr picpic
            1. chain a [27464] picpiclink
            2. chain b [27465] picpiclink
            3. chain c [27466] picpiclink
            4. chain d [27467] picpiclink
            5. chain e [27468] picpiclink
            6. chain f [27469] picpiclink
          42. 1ak4 picpicxref
            mutant
            1. chain a [27472] picpiclink
            2. chain b [27473] picpiclink
          43. 1aws picpic
            mutant
            1. chain a [27431] picpiclink
          44. 1awu picpic
            1. chain a [27474] picpiclink
          45. 1m63 picpicxrefxref
            complexed with calcineurin and cyclosporin (chain D and H)
            complexed with aba, bmt, ca, dal, fe, mle, mva, sar, zn
            1. chain c [78679] picpiclink
            2. chain g [78682] picpiclink
          46. 1awv picpic
            1. chain a [27475] picpiclink
            2. chain b [27476] picpiclink
            3. chain c [27477] picpiclink
            4. chain d [27478] picpiclink
            5. chain e [27479] picpiclink
            6. chain f [27480] picpiclink
          47. 1mf8 picpicxrefxref
            complexed with aba, bmt, ca, dal, mle, mva, po4, sar
            1. chain c [79042] picpiclink
          48. 1awt picpic
            mutant
            1. chain a [27481] picpiclink
            2. chain b [27482] picpiclink
            3. chain c [27483] picpiclink
            4. chain d [27484] picpiclink
            5. chain e [27485] picpiclink
            6. chain f [27486] picpiclink
          49. 1oca picpic
            1. chain a [27487] picpiclink
          50. 3cys picpic
            complexed with aba
            1. chain a [27488] picpiclink
        2. Human (Homo sapiens), variant B [TaxId: 9606] [50895] (1)
          1. 1cyn picpic
            complexed with aba
            1. chain a [27489] picpiclink
        3. Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606] [50896] (2)
          1. 1qoi picpic
            1. chain a [27490] picpiclink
          2. 1mzw picpic
            complexed with a 30-residue peptide from U4/U6 snRNP 60kda protein, chain B
            1. chain a [91503] picpiclink
        4. Mouse (Mus musculus), variant C [TaxId: 10090] [50897] (1)
          1. 2rmc picpic
            complexed with aba
            1. chain a [27491] picpiclink
            2. chain c [27492] picpiclink
            3. chain e [27493] picpiclink
            4. chain g [27494] picpiclink
        5. Nematode (Brugia malayi) [TaxId: 6279] [50898] (3)
          1. 1a33 picpic
            1. chain a [27496] picpiclink
          2. 1a58 picpic
            1. chain a [27495] picpiclink
          3. 1c5f picpic
            1. chain a [27497] picpiclink
            2. chain c [27498] picpiclink
            3. chain e [27499] picpiclink
            4. chain g [27500] picpiclink
            5. chain i [27501] picpiclink
            6. chain k [27502] picpiclink
            7. chain m [27503] picpiclink
            8. chain o [27504] picpiclink
        6. Caenorhabditis elegans, isoform 3 [TaxId: 6239] [50899] (5)
          1. 2igv picpic
            automatically matched to d1dywa_
            complexed with pro, ser
            1. region a:1-172 [147667] picpiclink
          2. 1dyw picpic
            1. chain a [27505] picpiclink
          3. 1e3b picpic
            complexed with 3ep, au
            1. chain a [27506] picpiclink
          4. 1e8k picpic
            complexed with ala, pro
            1. chain a [64797] picpiclink
          5. 2igw picpic
            automatically matched to d1dywa_
            complexed with gly, pro
            1. region a:1-172 [147668] picpiclink
        7. Caenorhabditis elegans, isoform 5 [TaxId: 6239] [82161] (1)
          1. 1h0p picpic
            complexed with dtt; mutant
            1. chain a [76450] picpiclink
        8. Plasmodium falciparum [TaxId: 5833] [50900] (2)
          1. 1qng picpic
            complexed with aba
            1. chain a [27507] picpiclink
          2. 1qnh picpic
            complexed with aba; mutant
            1. chain a [27508] picpiclink
            2. chain b [27509] picpiclink
        9. Baker's yeast (Saccharomyces cerevisiae), variant A [TaxId: 4932] [101878] (2)
          1. 1vdn picpic
            automatically matched to d1ista_
            complexed with ace, mcm
            1. region a:2-162 [120006] picpiclink
          2. 1ist picpic
            1. chain a [90692] picpiclink
            2. chain b [90693] picpiclink
        10. Trypanosoma cruzi [TaxId: 5693] [117269] (2)
          SQ Q4DPB9 30-194
          1. 1xo7 picpic
            Structural genomics target
            1. chain a [115694] picpiclink
            2. chain b [115695] picpiclink
            3. chain c [115696] picpiclink
            4. chain d [115697] picpiclink
          2. 1xq7 picpic
            Structural genomics target
            complexed with aba
            1. chain a [115831] picpiclink
            2. chain b [115832] picpiclink
            3. chain c [115833] picpiclink
        11. Human (Homo sapiens), variant C [TaxId: 9606] [141498] (6)
          SQ P45877 32-212
          1. 2esl picpic
            complexed with aba, ca, so4, zn
            1. region a:32-212 [132327] picpiclink
          2. 2esl picpic
            automatically matched to 2ESL A:32-212
            complexed with aba, ca, so4, zn
            1. region b:32-212 [132328] picpiclink
          3. 2esl picpic
            automatically matched to 2ESL A:32-212
            complexed with aba, ca, so4, zn
            1. region c:32-212 [132329] picpiclink
          4. 2esl picpic
            automatically matched to 2ESL A:32-212
            complexed with aba, ca, so4, zn
            1. region d:32-212 [132330] picpiclink
          5. 2esl picpic
            automatically matched to 2ESL A:32-212
            complexed with aba, ca, so4, zn
            1. region e:32-212 [132331] picpiclink
          6. 2esl picpic
            automatically matched to 2ESL A:32-212
            complexed with aba, ca, so4, zn
            1. region f:32-212 [132332] picpiclink
        12. Aspergillus fumigatus [TaxId: 5085] [141499] (2)
          SQ Q9Y7F6 8-178
          1. 2c3b picpic
            complexed with so4
            1. region a:1-171 [129723] picpiclink
          2. 2c3b picpic
            automatically matched to 2C3B A:1-171
            complexed with so4
            1. region b:1-171 [129724] picpiclink
        13. Plasmodium yoelii [TaxId: 5861] [141500] (1)
          SQ Q7RSH5 25-210
          1. 1z81 picpic
            1. region a:25-210 [124685] picpiclink
      2. Cyclophilin 40 isomerase domain [63814]
        the other domain is formed by TPR repeats
        1. Cow (Bos taurus) [TaxId: 9913] [63815] (2)
          1. 1ihg picpicxref
            complexed with gol
            1. region a:2-196 [62381] picpiclink
          2. 1iip picpicxref
            complexed with gol
            1. region a:2-196 [62452] picpiclink
      3. Peptidyl-prolyl cis-trans isomerase A, PpiA [50901]
        1. Escherichia coli [TaxId: 562] [50902] (6)
          SQ P20752
          1. 1v9t picpic
            complexed with nit, sin; mutant
            1. chain a [108451] picpiclink
            2. chain b [108452] picpiclink
          2. 1j2a picpic
            mutant
            1. chain a [90779] picpiclink
          3. 1lop picpic
            complexed with nit, sin
            1. chain a [27510] picpiclink
          4. 1vai picpic
            complexed with ace, mcm; mutant
            1. chain a [108470] picpiclink
            2. chain b [108471] picpiclink
          5. 2nul picpic
            1. chain a [27511] picpiclink
          6. 1clh picpic
            see also PDB entry 1CSA
            1. chain a [27512] picpiclink
        2. Mycobacterium tuberculosis [TaxId: 1773] [117270] (1)
          SQ P65762
          1. 1w74 picpic
            1. chain a [114311] picpiclink
            2. chain b [114312] picpiclink
      4. Cyclophilin-like allergen Mal s 6 [141501]
        1. Malassezia sympodialis [TaxId: 76777] [141502] (1)
          SQ O93970 1-162
          1. 2cfe picpic
            complexed with ala, gol, pro
            1. region a:1-162 [130375] picpiclink
      5. Peptidyl-prolyl cis-trans isomerase E, PPIE, C-terminal domain [141503]
        N-terminal domain belongs to the RBD family (scop_fa 54929)
        1. Human (Homo sapiens) [TaxId: 9606] [141504] (1)
          SQ Q9UNP9 138-301
          structure of the N-terminal RBD is known, PDB 2cqb
          1. 1zmf picpic
            automatically matched to 1ZCX A:138-301
            1. region a:139-300 [125361] picpiclink
      6. Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain [141505]
        1. Human (Homo sapiens) [TaxId: 9606] [141506] (2)
          SQ Q13356 280-457
          1. 1zkc picpic
            includes extra C-terminal helix
            complexed with bme
            1. region a:280-457 [125182] picpiclink
          2. 1zkc picpic
            automatically matched to 1ZKC A:280-457
            complexed with bme
            1. region b:280-457 [125183] picpiclink
      7. Cyclophilin-like protein PY00693 [141507]
        1. Plasmodium yoelii [TaxId: 5861] [141508] (1)
          SQ Q7RRM6 29-197
          1. 2b71 picpic
            complexed with cl
            1. region a:23-191 [128004] picpiclink
      8. Cyclophilin-like protein PPIL3B [141509]
        1. Human (Homo sapiens) [TaxId: 9606] [141510] (4)
          SQ Q9H2H8 1-160
          1. 2ok3 picpic
            automatically matched to d1xyha1
            complexed with ni
            1. region a:1-159 [148800] picpiclink
          2. 1xyh picpic
            1. region a:1-160 [122459] picpiclink
          3. 2oju picpic
            automatically matched to d1xyha1
            complexed with aba
            1. region a:7-165 [148798] picpiclink
          4. 2oju picpic
            automatically matched to d1xyha1
            complexed with aba
            1. region b:7-165 [148799] picpiclink
      9. Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F [141511]
        1. Human (Homo sapiens) [TaxId: 9606] [141512] (5)
          SQ P30405 44-207
          1. 2z6w picpic
            automatically matched to d2bitx1
            complexed with aba, cit; mutant
            1. region a:2-165 [154184] picpiclink
          2. 2z6w picpic
            automatically matched to d2bitx1
            complexed with aba, cit; mutant
            1. region b:2-165 [154185] picpiclink
          3. 2r99 picpic
            automatically matched to d2bitx1
            1. region a:139-299 [151763] picpiclink
          4. 2biu picpic
            automatically matched to 2BIT X:2-165
            complexed with dms; mutant
            1. region x:2-165 [128591] picpiclink
          5. 2bit picpic
            mutant
            1. region x:2-165 [128590] picpiclink
      10. Putative cyclophilin PFE0505w [141513]
        PPWD1 homologue
        1. Plasmodium falciparum [TaxId: 5833] [141514] (1)
          SQ Q8I402 592-746
          1. 2fu0 picpic
            1. region a:5-159 [134095] picpiclink
      11. Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain [141515]
        1. Human (Homo sapiens) [TaxId: 9606] [141516] (3)
          SQ Q96BP3 483-646
          1. 2a2n picpic
            complexed with gol
            1. region a:483-646 [126041] picpiclink
          2. 2a2n picpic
            automatically matched to 2A2N A:483-646
            complexed with gol
            1. region b:483-646 [126042] picpiclink
          3. 2a2n picpic
            automatically matched to 2A2N A:483-646
            complexed with gol
            1. region c:483-646 [126043] picpiclink
      12. Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 [141517]
        1. Human (Homo sapiens) [TaxId: 9606] [141518] (1)
          SQ Q9Y3C6 1-166
          1. 1xwn picpic
            1. region a:1-166 [122404] picpiclink
    2. Outer surface protein, C-terminal domain [110278] (1)
      lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 05913
      1. Outer surface protein, C-terminal domain [110279]
        1. Bacillus cereus [TaxId: 1396] [110280] (1)
          SQ Q81HJ5
          1. 1x7f picpicxref
            1. region a:245-361 [109498] picpiclink
    3. TM1367-like [141519] (1)
      Pfam 04126; DUF369
      1. Hypothetical protein TM1367 [141520]
        1. Thermotoga maritima [TaxId: 2336] [141521] (3)
          SQ Q9X187 1-124
          1. 1zx8 picpic
            complexed with 1pe, ni
            1. region a:1-124 [125764] picpiclink
          2. 1zx8 picpic
            automatically matched to 1ZX8 A:1-124
            complexed with 1pe, ni
            1. region b:1-124 [125765] picpiclink
          3. 1zx8 picpic
            automatically matched to 1ZX8 A:1-124
            complexed with 1pe, ni
            1. region c:1-123 [125766] picpiclink
    4. PH0987 C-terminal domain-like [159249] (1)
      lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 02682; Allophanate hydrolase subunit 1 (AHS1)
      1. Uncharacterized protein PH0987 [159250]
        1. Pyrococcus horikoshii [TaxId: 53953] [159251] (1)
          SQ O58715 86-217
          1. 2phc picpicxref
            1. region b:86-217 [149466] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk