Structural Classification of Proteins

Fold: Cyclophilin-like

: barrel, closed; n=8, S=10; complex topology

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Cyclophilin-like [50890]
barrel, closed; n=8, S=10; complex topology

Superfamilies:

Cyclophilin-like [50891] (4)
uperfamily
1. Cyclophilin (peptidylprolyl isomerase) [50892] (25)
  1. Cyclophilin (eukaryotic) [50893]
    1. Human (Homo sapiens), variant A [TaxId: 9606] [50894] (50)
      SQ P05092
    2. Human (Homo sapiens), variant B [TaxId: 9606] [50895] (1)
    3. Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606] [50896] (2)
    4. Mouse (Mus musculus), variant C [TaxId: 10090] [50897] (1)
    5. Nematode (Brugia malayi) [TaxId: 6279] [50898] (3)
    6. Caenorhabditis elegans, isoform 3 [TaxId: 6239] [50899] (5)
    7. Caenorhabditis elegans, isoform 5 [TaxId: 6239] [82161] (1)
    8. Plasmodium falciparum [TaxId: 5833] [50900] (2)
    9. Baker's yeast (Saccharomyces cerevisiae), variant A [TaxId: 4932] [101878] (2)
    10. Trypanosoma cruzi [TaxId: 5693] [117269] (2)
      SQ Q4DPB9 30-194
    11. Human (Homo sapiens), variant C [TaxId: 9606] [141498] (6)
      SQ P45877 32-212
    12. Aspergillus fumigatus [TaxId: 5085] [141499] (2)
      SQ Q9Y7F6 8-178
    13. Plasmodium yoelii [TaxId: 5861] [141500] (1)
      SQ Q7RSH5 25-210
  2. Cyclophilin 40 isomerase domain [63814]
    the other domain is formed by TPR repeats
    1. Cow (Bos taurus) [TaxId: 9913] [63815] (2)
  3. Peptidyl-prolyl cis-trans isomerase A, PpiA [50901]
    1. Escherichia coli [TaxId: 562] [50902] (6)
      SQ P20752
    2. Mycobacterium tuberculosis [TaxId: 1773] [117270] (1)
      SQ P65762
  4. Cyclophilin-like allergen Mal s 6 [141501]
    1. Malassezia sympodialis [TaxId: 76777] [141502] (1)
      SQ O93970 1-162
  5. Peptidyl-prolyl cis-trans isomerase E, PPIE, C-terminal domain [141503]
    N-terminal domain belongs to the RBD family (scop_fa 54929)
    1. Human (Homo sapiens) [TaxId: 9606] [141504] (1)
      SQ Q9UNP9 138-301
      structure of the N-terminal RBD is known, PDB 2cqb
  6. Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain [141505]
    1. Human (Homo sapiens) [TaxId: 9606] [141506] (2)
      SQ Q13356 280-457
  7. Cyclophilin-like protein PY00693 [141507]
    1. Plasmodium yoelii [TaxId: 5861] [141508] (1)
      SQ Q7RRM6 29-197
  8. Cyclophilin-like protein PPIL3B [141509]
    1. Human (Homo sapiens) [TaxId: 9606] [141510] (4)
      SQ Q9H2H8 1-160
  9. Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F [141511]
    1. Human (Homo sapiens) [TaxId: 9606] [141512] (5)
      SQ P30405 44-207
  10. Putative cyclophilin PFE0505w [141513]
    PPWD1 homologue
    1. Plasmodium falciparum [TaxId: 5833] [141514] (1)
      SQ Q8I402 592-746
  11. Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain [141515]
    1. Human (Homo sapiens) [TaxId: 9606] [141516] (3)
      SQ Q96BP3 483-646
  12. Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 [141517]
    1. Human (Homo sapiens) [TaxId: 9606] [141518] (1)
      SQ Q9Y3C6 1-166
2. Outer surface protein, C-terminal domain [110278] (1)
  lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 05913
  1. Outer surface protein, C-terminal domain [110279]
    1. Bacillus cereus [TaxId: 1396] [110280] (1)
      SQ Q81HJ5
3. TM1367-like [141519] (1)
  Pfam 04126; DUF369
  1. Hypothetical protein TM1367 [141520]
    1. Thermotoga maritima [TaxId: 2336] [141521] (3)
      SQ Q9X187 1-124
4. PH0987 C-terminal domain-like [159249] (1)
  lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 02682; Allophanate hydrolase subunit 1 (AHS1)
  1. Uncharacterized protein PH0987 [159250]
    1. Pyrococcus horikoshii [TaxId: 53953] [159251] (1)
      SQ O58715 86-217