Structural Classification of Proteins

Superfamily: Cyclophilin-like

: uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Cyclophilin-like [50890]
barrel, closed; n=8, S=10; complex topology
Superfamily: Cyclophilin-like [50891]
uperfamily

Families:

Cyclophilin (peptidylprolyl isomerase) [50892] (25)
1. Cyclophilin (eukaryotic) [50893]
  1. Human (Homo sapiens), variant A [TaxId: 9606] [50894] (50)
    SQ P05092
    1. 1w8m
      complexed with e1p
      1. chain a [114370]
    2. 1ynd
      automatically matched to d1ak4a_
      complexed with sfa
      1. region a:2-165 [123721]
    3. 1ynd
      automatically matched to d1ak4a_
      complexed with sfa
      1. region b:2-165 [123722]
    4. 2cpl
      1. chain a [27420]
    5. 1w8v
      1. chain a [114377]
    6. 2cyh
      1. chain a [27421]
    7. 1cwk
      complexed with tmd
      1. chain a [27422]
    8. 1m9f
      mutant
      1. chain a [84898]
      2. chain b [84899]
    9. 1cwl
      complexed with aba, mgy, mhl
      1. chain a [27423]
    10. 1m9x
      mutant
      1. chain a [84905]
      2. chain b [84906]
      3. chain e [84909]
      4. chain f [84910]
    11. 1mik
      complexed with dhn
      1. chain a [27424]
    12. 1w8l
      complexed with 1p3
      1. chain a [114369]
    13. 1cwj
      complexed with mnv, tbm
      1. chain a [27425]
    14. 1fgl
      1. chain a [27426]
    15. 1m9e
      mutant
      1. chain a [84894]
      2. chain b [84895]
    16. 1bck
      1. chain a [27427]
    17. 1cwf
      1. chain a [27429]
    18. 1cwc
      complexed with aba, mnl
      1. chain a [27428]
    19. 2alf
      complexed with mg; mutant
      1. region a:2-165 [126975]
    20. 1nmk
      complexed with sfm
      1. chain a [85875]
      2. chain b [85876]
    21. 3cyh
      1. chain a [27432]
    22. 1m9d
      mutant
      1. chain a [84890]
      2. chain b [84891]
    23. 1m9y
      mutant
      1. chain a [84913]
      2. chain b [84914]
      3. chain e [84917]
      4. chain f [84918]
    24. 1cwm
      complexed with aba, iml, tmb
      1. chain a [27433]
    25. 1cwh
      complexed with aba, dse
      1. chain a [27430]
    26. 2rma
      complexed with aba
      1. chain a [27435]
      2. chain c [27436]
      3. chain e [27437]
      4. chain g [27438]
      5. chain i [27439]
      6. chain k [27440]
      7. chain m [27441]
      8. chain o [27442]
      9. chain q [27443]
      10. chain s [27444]
    27. 1cwo
      complexed with vad
      1. chain a [27445]
    28. 1cwa
      complexed with aba
      1. chain a [27434]
    29. 2rmb
      complexed with aba, dmt
      1. chain a [27446]
      2. chain c [27447]
      3. chain e [27448]
      4. chain g [27449]
      5. chain i [27450]
      6. chain k [27451]
      7. chain m [27452]
      8. chain o [27453]
      9. chain q [27454]
      10. chain s [27455]
    30. 1vbs
      complexed with nit
      1. chain a [27456]
    31. 4cyh
      1. chain a [27457]
    32. 1cwi
      1. chain a [27458]
    33. 1m9c
      1. chain a [84886]
      2. chain b [84887]
    34. 1cwb
      complexed with aba, dmt
      1. chain a [27459]
    35. 5cyh
      1. chain a [27460]
    36. 1awq
      1. chain a [27461]
    37. 1zkf
      automatically matched to d1ak4a_
      complexed with nit, sin
      1. region a:2-165 [125192]
    38. 1zkf
      automatically matched to d1ak4a_
      complexed with nit, sin
      1. region b:2-165 [125193]
    39. 1vbt
      complexed with alt, nit
      1. chain a [27462]
      2. chain b [27463]
    40. 1rmh
      complexed with nit, sin
      1. chain a [27470]
      2. chain b [27471]
    41. 1awr
      1. chain a [27464]
      2. chain b [27465]
      3. chain c [27466]
      4. chain d [27467]
      5. chain e [27468]
      6. chain f [27469]
    42. 1ak4
      mutant
      1. chain a [27472]
      2. chain b [27473]
    43. 1aws
      mutant
      1. chain a [27431]
    44. 1awu
      1. chain a [27474]
    45. 1m63
      complexed with calcineurin and cyclosporin (chain D and H)
      complexed with aba, bmt, ca, dal, fe, mle, mva, sar, zn
      1. chain c [78679]
      2. chain g [78682]
    46. 1awv
      1. chain a [27475]
      2. chain b [27476]
      3. chain c [27477]
      4. chain d [27478]
      5. chain e [27479]
      6. chain f [27480]
    47. 1mf8
      complexed with aba, bmt, ca, dal, mle, mva, po4, sar
      1. chain c [79042]
    48. 1awt
      mutant
      1. chain a [27481]
      2. chain b [27482]
      3. chain c [27483]
      4. chain d [27484]
      5. chain e [27485]
      6. chain f [27486]
    49. 1oca
      1. chain a [27487]
    50. 3cys
      complexed with aba
      1. chain a [27488]
  2. Human (Homo sapiens), variant B [TaxId: 9606] [50895] (1)
    1. 1cyn
      complexed with aba
      1. chain a [27489]
  3. Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606] [50896] (2)
    1. 1qoi
      1. chain a [27490]
    2. 1mzw
      complexed with a 30-residue peptide from U4/U6 snRNP 60kda protein, chain B
      1. chain a [91503]
  4. Mouse (Mus musculus), variant C [TaxId: 10090] [50897] (1)
    1. 2rmc
      complexed with aba
      1. chain a [27491]
      2. chain c [27492]
      3. chain e [27493]
      4. chain g [27494]
  5. Nematode (Brugia malayi) [TaxId: 6279] [50898] (3)
    1. 1a33
      1. chain a [27496]
    2. 1a58
      1. chain a [27495]
    3. 1c5f
      1. chain a [27497]
      2. chain c [27498]
      3. chain e [27499]
      4. chain g [27500]
      5. chain i [27501]
      6. chain k [27502]
      7. chain m [27503]
      8. chain o [27504]
  6. Caenorhabditis elegans, isoform 3 [TaxId: 6239] [50899] (5)
    1. 2igv
      automatically matched to d1dywa_
      complexed with pro, ser
      1. region a:1-172 [147667]
    2. 1dyw
      1. chain a [27505]
    3. 1e3b
      complexed with 3ep, au
      1. chain a [27506]
    4. 1e8k
      complexed with ala, pro
      1. chain a [64797]
    5. 2igw
      automatically matched to d1dywa_
      complexed with gly, pro
      1. region a:1-172 [147668]
  7. Caenorhabditis elegans, isoform 5 [TaxId: 6239] [82161] (1)
    1. 1h0p
      complexed with dtt; mutant
      1. chain a [76450]
  8. Plasmodium falciparum [TaxId: 5833] [50900] (2)
    1. 1qng
      complexed with aba
      1. chain a [27507]
    2. 1qnh
      complexed with aba; mutant
      1. chain a [27508]
      2. chain b [27509]
  9. Baker's yeast (Saccharomyces cerevisiae), variant A [TaxId: 4932] [101878] (2)
    1. 1vdn
      automatically matched to d1ista_
      complexed with ace, mcm
      1. region a:2-162 [120006]
    2. 1ist
      1. chain a [90692]
      2. chain b [90693]
  10. Trypanosoma cruzi [TaxId: 5693] [117269] (2)
    SQ Q4DPB9 30-194
    1. 1xo7
      Structural genomics target
      1. chain a [115694]
      2. chain b [115695]
      3. chain c [115696]
      4. chain d [115697]
    2. 1xq7
      Structural genomics target
      complexed with aba
      1. chain a [115831]
      2. chain b [115832]
      3. chain c [115833]
  11. Human (Homo sapiens), variant C [TaxId: 9606] [141498] (6)
    SQ P45877 32-212
    1. 2esl
      complexed with aba, ca, so4, zn
      1. region a:32-212 [132327]
    2. 2esl
      automatically matched to 2ESL A:32-212
      complexed with aba, ca, so4, zn
      1. region b:32-212 [132328]
    3. 2esl
      automatically matched to 2ESL A:32-212
      complexed with aba, ca, so4, zn
      1. region c:32-212 [132329]
    4. 2esl
      automatically matched to 2ESL A:32-212
      complexed with aba, ca, so4, zn
      1. region d:32-212 [132330]
    5. 2esl
      automatically matched to 2ESL A:32-212
      complexed with aba, ca, so4, zn
      1. region e:32-212 [132331]
    6. 2esl
      automatically matched to 2ESL A:32-212
      complexed with aba, ca, so4, zn
      1. region f:32-212 [132332]
  12. Aspergillus fumigatus [TaxId: 5085] [141499] (2)
    SQ Q9Y7F6 8-178
    1. 2c3b
      complexed with so4
      1. region a:1-171 [129723]
    2. 2c3b
      automatically matched to 2C3B A:1-171
      complexed with so4
      1. region b:1-171 [129724]
  13. Plasmodium yoelii [TaxId: 5861] [141500] (1)
    SQ Q7RSH5 25-210
    1. 1z81
      1. region a:25-210 [124685]
2. Cyclophilin 40 isomerase domain [63814]
  the other domain is formed by TPR repeats
  1. Cow (Bos taurus) [TaxId: 9913] [63815] (2)
    1. 1ihg
      complexed with gol
      1. region a:2-196 [62381]
    2. 1iip
      complexed with gol
      1. region a:2-196 [62452]
3. Peptidyl-prolyl cis-trans isomerase A, PpiA [50901]
  1. Escherichia coli [TaxId: 562] [50902] (6)
    SQ P20752
    1. 1v9t
      complexed with nit, sin; mutant
      1. chain a [108451]
      2. chain b [108452]
    2. 1j2a
      mutant
      1. chain a [90779]
    3. 1lop
      complexed with nit, sin
      1. chain a [27510]
    4. 1vai
      complexed with ace, mcm; mutant
      1. chain a [108470]
      2. chain b [108471]
    5. 2nul
      1. chain a [27511]
    6. 1clh
      see also PDB entry 1CSA
      1. chain a [27512]
  2. Mycobacterium tuberculosis [TaxId: 1773] [117270] (1)
    SQ P65762
    1. 1w74
      1. chain a [114311]
      2. chain b [114312]
4. Cyclophilin-like allergen Mal s 6 [141501]
  1. Malassezia sympodialis [TaxId: 76777] [141502] (1)
    SQ O93970 1-162
    1. 2cfe
      complexed with ala, gol, pro
      1. region a:1-162 [130375]
5. Peptidyl-prolyl cis-trans isomerase E, PPIE, C-terminal domain [141503]
  N-terminal domain belongs to the RBD family (scop_fa 54929)
  1. Human (Homo sapiens) [TaxId: 9606] [141504] (1)
    SQ Q9UNP9 138-301
    structure of the N-terminal RBD is known, PDB 2cqb
    1. 1zmf
      automatically matched to 1ZCX A:138-301
      1. region a:139-300 [125361]
6. Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain [141505]
  1. Human (Homo sapiens) [TaxId: 9606] [141506] (2)
    SQ Q13356 280-457
    1. 1zkc
      includes extra C-terminal helix
      complexed with bme
      1. region a:280-457 [125182]
    2. 1zkc
      automatically matched to 1ZKC A:280-457
      complexed with bme
      1. region b:280-457 [125183]
7. Cyclophilin-like protein PY00693 [141507]
  1. Plasmodium yoelii [TaxId: 5861] [141508] (1)
    SQ Q7RRM6 29-197
    1. 2b71
      complexed with cl
      1. region a:23-191 [128004]
8. Cyclophilin-like protein PPIL3B [141509]
  1. Human (Homo sapiens) [TaxId: 9606] [141510] (4)
    SQ Q9H2H8 1-160
    1. 2ok3
      automatically matched to d1xyha1
      complexed with ni
      1. region a:1-159 [148800]
    2. 1xyh
      1. region a:1-160 [122459]
    3. 2oju
      automatically matched to d1xyha1
      complexed with aba
      1. region a:7-165 [148798]
    4. 2oju
      automatically matched to d1xyha1
      complexed with aba
      1. region b:7-165 [148799]
9. Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F [141511]
  1. Human (Homo sapiens) [TaxId: 9606] [141512] (5)
    SQ P30405 44-207
    1. 2z6w
      automatically matched to d2bitx1
      complexed with aba, cit; mutant
      1. region a:2-165 [154184]
    2. 2z6w
      automatically matched to d2bitx1
      complexed with aba, cit; mutant
      1. region b:2-165 [154185]
    3. 2r99
      automatically matched to d2bitx1
      1. region a:139-299 [151763]
    4. 2biu
      automatically matched to 2BIT X:2-165
      complexed with dms; mutant
      1. region x:2-165 [128591]
    5. 2bit
      mutant
      1. region x:2-165 [128590]
10. Putative cyclophilin PFE0505w [141513]
  PPWD1 homologue
  1. Plasmodium falciparum [TaxId: 5833] [141514] (1)
    SQ Q8I402 592-746
    1. 2fu0
      1. region a:5-159 [134095]
11. Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain [141515]
  1. Human (Homo sapiens) [TaxId: 9606] [141516] (3)
    SQ Q96BP3 483-646
    1. 2a2n
      complexed with gol
      1. region a:483-646 [126041]
    2. 2a2n
      automatically matched to 2A2N A:483-646
      complexed with gol
      1. region b:483-646 [126042]
    3. 2a2n
      automatically matched to 2A2N A:483-646
      complexed with gol
      1. region c:483-646 [126043]
12. Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 [141517]
  1. Human (Homo sapiens) [TaxId: 9606] [141518] (1)
    SQ Q9Y3C6 1-166
    1. 1xwn
      1. region a:1-166 [122404]
Outer surface protein, C-terminal domain [110278] (1)
lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 05913
1. Outer surface protein, C-terminal domain [110279]
  1. Bacillus cereus [TaxId: 1396] [110280] (1)
    SQ Q81HJ5
    1. 1x7f
      1. region a:245-361 [109498]
TM1367-like [141519] (1)
Pfam 04126; DUF369
1. Hypothetical protein TM1367 [141520]
  1. Thermotoga maritima [TaxId: 2336] [141521] (3)
    SQ Q9X187 1-124
    1. 1zx8
      complexed with 1pe, ni
      1. region a:1-124 [125764]
    2. 1zx8
      automatically matched to 1ZX8 A:1-124
      complexed with 1pe, ni
      1. region b:1-124 [125765]
    3. 1zx8
      automatically matched to 1ZX8 A:1-124
      complexed with 1pe, ni
      1. region c:1-123 [125766]
PH0987 C-terminal domain-like [159249] (1)
lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 02682; Allophanate hydrolase subunit 1 (AHS1)
1. Uncharacterized protein PH0987 [159250]
  1. Pyrococcus horikoshii [TaxId: 53953] [159251] (1)
    SQ O58715 86-217
    1. 2phc
      1. region b:86-217 [149466]