Structural Classification of Proteins
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Superfamily: Cyclophilin-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Cyclophilin-like [50890]
    barrel, closed; n=8, S=10; complex topology
  4. Superfamily: Cyclophilin-like [50891]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Cyclophilin (peptidylprolyl isomerase) [50892] (25)
    1. Cyclophilin (eukaryotic) [50893]
      1. Human (Homo sapiens), variant A [TaxId: 9606] [50894] (50) picpic
        SQ P05092
      2. Human (Homo sapiens), variant B [TaxId: 9606] [50895] (1) picpic
      3. Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606] [50896] (2) picpic
      4. Mouse (Mus musculus), variant C [TaxId: 10090] [50897] (1) picpic
      5. Nematode (Brugia malayi) [TaxId: 6279] [50898] (3) picpic
      6. Caenorhabditis elegans, isoform 3 [TaxId: 6239] [50899] (5) picpic
      7. Caenorhabditis elegans, isoform 5 [TaxId: 6239] [82161] (1) picpic
      8. Plasmodium falciparum [TaxId: 5833] [50900] (2) picpic
      9. Baker's yeast (Saccharomyces cerevisiae), variant A [TaxId: 4932] [101878] (2) picpic
      10. Trypanosoma cruzi [TaxId: 5693] [117269] (2) picpic
        SQ Q4DPB9 30-194
      11. Human (Homo sapiens), variant C [TaxId: 9606] [141498] (6) picpic
        SQ P45877 32-212
      12. Aspergillus fumigatus [TaxId: 5085] [141499] (2) picpic
        SQ Q9Y7F6 8-178
      13. Plasmodium yoelii [TaxId: 5861] [141500] (1) picpic
        SQ Q7RSH5 25-210
    2. Cyclophilin 40 isomerase domain [63814]
      the other domain is formed by TPR repeats
      1. Cow (Bos taurus) [TaxId: 9913] [63815] (2) picpic
    3. Peptidyl-prolyl cis-trans isomerase A, PpiA [50901]
      1. Escherichia coli [TaxId: 562] [50902] (6) picpic
        SQ P20752
      2. Mycobacterium tuberculosis [TaxId: 1773] [117270] (1) picpic
        SQ P65762
    4. Cyclophilin-like allergen Mal s 6 [141501]
      1. Malassezia sympodialis [TaxId: 76777] [141502] (1) picpic
        SQ O93970 1-162
    5. Peptidyl-prolyl cis-trans isomerase E, PPIE, C-terminal domain [141503]
      N-terminal domain belongs to the RBD family (scop_fa 54929)
      1. Human (Homo sapiens) [TaxId: 9606] [141504] (1) picpic
        SQ Q9UNP9 138-301
        structure of the N-terminal RBD is known, PDB 2cqb
    6. Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain [141505]
      1. Human (Homo sapiens) [TaxId: 9606] [141506] (2) picpic
        SQ Q13356 280-457
    7. Cyclophilin-like protein PY00693 [141507]
      1. Plasmodium yoelii [TaxId: 5861] [141508] (1) picpic
        SQ Q7RRM6 29-197
    8. Cyclophilin-like protein PPIL3B [141509]
      1. Human (Homo sapiens) [TaxId: 9606] [141510] (4) picpic
        SQ Q9H2H8 1-160
    9. Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F [141511]
      1. Human (Homo sapiens) [TaxId: 9606] [141512] (5) picpic
        SQ P30405 44-207
    10. Putative cyclophilin PFE0505w [141513]
      PPWD1 homologue
      1. Plasmodium falciparum [TaxId: 5833] [141514] (1) picpic
        SQ Q8I402 592-746
    11. Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain [141515]
      1. Human (Homo sapiens) [TaxId: 9606] [141516] (3) picpic
        SQ Q96BP3 483-646
    12. Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 [141517]
      1. Human (Homo sapiens) [TaxId: 9606] [141518] (1) picpic
        SQ Q9Y3C6 1-166
  2. Outer surface protein, C-terminal domain [110278] (1)
    lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 05913
    1. Outer surface protein, C-terminal domain [110279]
      1. Bacillus cereus [TaxId: 1396] [110280] (1) picpic
        SQ Q81HJ5
  3. TM1367-like [141519] (1)
    Pfam 04126; DUF369
    1. Hypothetical protein TM1367 [141520]
      1. Thermotoga maritima [TaxId: 2336] [141521] (3) picpic
        SQ Q9X187 1-124
  4. PH0987 C-terminal domain-like [159249] (1)
    lacks the N-terminal strand of cyclophilin but the beta-barrel (7,10) remains closed; corresponds to the C-terminal part of Pfam 02682; Allophanate hydrolase subunit 1 (AHS1)
    1. Uncharacterized protein PH0987 [159250]
      1. Pyrococcus horikoshii [TaxId: 53953] [159251] (1) picpic
        SQ O58715 86-217

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MRC
site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk